Atom Nomenclature for 18C

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 18C

Atom Name (V3) Atom Name (V2)
O19 O19
C19 C19
N2 N2
C2 C2
C1 C1
O1 O1
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
O3 O3
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
C33 C33
C34 C34
C35 C35
C36 C36
H361 1H36
H362 2H36
H363 3H36
H351 1H35
H352 2H35
H341 1H34
H342 2H34
H331 1H33
H332 2H33
H321 1H32
H322 2H32
H311 1H31
H312 2H31
H301 1H30
H302 2H30
H291 1H29
H292 2H29
H281 1H28
H282 2H28
H271 1H27
H272 2H27
H261 1H26
H262 2H26
H251 1H25
H252 2H25
H241 1H24
H242 2H24
H231 1H23
H232 2H23
H221 1H22
H222 2H22
H211 1H21
H212 2H21
H201 1H20
H202 2H20
HN2 HN2
H2 H2
H11 1H1
H12 2H1
HO1 HO1
H3 H3
HO3 HO3
H4 H4
H5 H5
H61 1H6
H62 2H6
H71 1H7
H72 2H7
H81 1H8
H82 2H8
H91 1H9
H92 2H9
H101 1H10
H102 2H10
H111 1H11
H112 2H11
H121 1H12
H122 2H12
H131 1H13
H132 2H13
H141 1H14
H142 2H14
H151 1H15
H152 2H15
H161 1H16
H162 2H16
H171 1H17
H172 2H17
H181 1H18
H182 2H18
H183 3H18