Atom Nomenclature for 182

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 182

Atom Name (V3) Atom Name (V2)
OAC OAC
CAJ CAJ
CAK CAK
OAN OAN
CAL CAL
NAT NAT
CAS CAS
OAB OAB
NAM NAM
CAR CAR
OAA OAA
CAI CAI
CAQ CAQ
SE SE
CAP CAP
CAH CAH
CAF CAF
CAD CAD
CAE CAE
CAG CAG
HAC HAC
HAJ1 1HAJ
HAJ2 2HAJ
HAK1 1HAK
HAK2 2HAK
HAL1 1HAL
HAL2 2HAL
HAM HAM
HAI HAI
HAH HAH
HAF HAF
HAD HAD
HAE HAE
HAG HAG