Atom Nomenclature for 17F

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 17F

Atom Name (V3) Atom Name (V2)
C1 C1
N1 N1
O1 O1
P1 P1
C2 C2
O2 O2
C3 C3
O3 O3
C4 C4
O4 O4
C5 C5
O5 O5
C6 C6
O6 O6
C7 C7
O7 O7
C8 C8
O8 O8
C9 C9
O9 O9
C10 C10
O10 O10
C11 C11
C12 C12
C17 C17
C18 C18
C19 C19
C20 C20
C1X C1X
C1Y C1Y
C1Z C1Z
C2X C2X
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
C33 C33
C34 C34
C35 C35
C36 C36
C37 C37
C38 C38
C39 C39
C40 C40
C41 C41
C42 C42
H1 H1
H1A H1A
HN1 HN1
HN1A HN1A
H2 H2
HO2 HO2
H4 H4
H4A H4A
H5 H5
HO5 HO5
H6 H6
H6A H6A
H8 H8
H8A H8A
H9 H9
H9A H9A
H10 H10
H10A H10A
H11 H11
H11A H11A
H12 H12
H12A H12A
H18 H18
H18A H18A
H19 H19
H19A H19A
H20 H20
H20A H20A
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46
H47 H47
H48 H48
H49 H49
H50 H50
H51 H51
H52 H52
H53 H53
H54 H54
H55 H55
H56 H56
H57 H57
H58 H58
H59 H59
H60 H60
H61 H61
H62 H62
H63 H63
H64 H64
H65 H65
H66 H66
H67 H67
H68 H68
H69 H69
H70 H70
H71 H71
H72 H72
H73 H73
H74 H74
H75 H75
H76 H76
H77 H77
H78 H78