PDB Chemical Component 178

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 178

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O C1 1.377 1.360
O HO 0.950 0.967
C1 C2 1.420 1.386
C1 C6 1.412 1.388
C2 C2A 1.501 1.507
C2 C3 1.405 1.380
C2A C2B 1.520 1.530
C2A C2G 1.516 1.529
C2A H2A 1.115 1.089
C2B H2B1 1.115 1.090
C2B H2B2 1.115 1.090
C2B H2B3 1.115 1.089
C2G H2G1 1.115 1.090
C2G H2G2 1.115 1.090
C2G H2G3 1.115 1.090
C3 C4 1.407 1.388
C3 H3 1.103 1.080
C4 C5 1.407 1.388
C4 S 1.699 1.763
C5 C6 1.395 1.380
C5 H5 1.102 1.079
C6 H6 1.103 1.080
S C4' 1.700 1.761
O' C1' 1.376 1.359
O' HO' 0.950 0.966
C1' C2' 1.418 1.387
C1' C6' 1.414 1.387
C2' C2X 1.502 1.507
C2' C3' 1.403 1.380
C2X C2Y 1.519 1.530
C2X C2Z 1.517 1.530
C2X H2X 1.115 1.090
C2Y H2Y1 1.115 1.090
C2Y H2Y2 1.115 1.091
C2Y H2Y3 1.115 1.090
C2Z H2Z1 1.115 1.090
C2Z H2Z2 1.115 1.090
C2Z H2Z3 1.115 1.090
C3' C4' 1.407 1.389
C3' H3' 1.103 1.080
C4' C5' 1.406 1.389
C5' C6' 1.395 1.381
C5' H5' 1.102 1.080
C6' H6' 1.103 1.080

Bond Angles for 178

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 O HO 120.2 106.8
O C1 C2 120.2 120.0
O C1 C6 120.0 119.9
C2 C1 C6 119.8 120.0
C1 C2 C2A 120.1 120.0
C1 C2 C3 119.7 120.0
C1 C6 C5 120.1 120.0
C1 C6 H6 120.6 120.0
C2A C2 C3 120.2 120.0
C2 C2A C2B 109.9 109.5
C2 C2A C2G 109.8 109.5
C2 C2A H2A 109.0 109.5
C2 C3 C4 120.0 120.0
C2 C3 H3 119.9 120.0
C2B C2A C2G 109.7 109.5
C2B C2A H2A 109.2 109.4
C2A C2B H2B1 112.1 109.5
C2A C2B H2B2 109.9 109.5
C2A C2B H2B3 112.0 109.5
C2G C2A H2A 109.2 109.4
C2A C2G H2G1 112.1 109.5
C2A C2G H2G2 109.8 109.5
C2A C2G H2G3 112.1 109.5
H2B1 C2B H2B2 112.0 109.5
H2B1 C2B H2B3 98.3 109.5
H2B2 C2B H2B3 112.1 109.4
H2G1 C2G H2G2 112.1 109.4
H2G1 C2G H2G3 98.3 109.5
H2G2 C2G H2G3 112.1 109.5
C4 C3 H3 120.1 120.1
C3 C4 C5 120.2 120.0
C3 C4 S 119.9 120.0
C5 C4 S 119.9 120.0
C4 C5 C6 120.2 119.9
C4 C5 H5 120.3 120.1
C4 S C4' 101.8 100.0
C6 C5 H5 119.4 120.0
C5 C6 H6 119.3 120.0
S C4' C3' 119.9 120.1
S C4' C5' 119.9 120.0
C1' O' HO' 120.3 106.9
O' C1' C2' 120.3 120.1
O' C1' C6' 119.9 119.9
C2' C1' C6' 119.8 120.0
C1' C2' C2X 120.2 119.9
C1' C2' C3' 119.7 120.1
C1' C6' C5' 120.0 120.0
C1' C6' H6' 120.7 120.0
C2X C2' C3' 120.2 120.0
C2' C2X C2Y 109.8 109.5
C2' C2X C2Z 109.9 109.4
C2' C2X H2X 109.0 109.5
C2' C3' C4' 120.1 120.0
C2' C3' H3' 119.8 120.0
C2Y C2X C2Z 109.6 109.4
C2Y C2X H2X 109.3 109.5
C2X C2Y H2Y1 112.1 109.4
C2X C2Y H2Y2 109.8 109.4
C2X C2Y H2Y3 112.1 109.5
C2Z C2X H2X 109.3 109.5
C2X C2Z H2Z1 112.1 109.5
C2X C2Z H2Z2 109.9 109.5
C2X C2Z H2Z3 112.1 109.5
H2Y1 C2Y H2Y2 112.1 109.5
H2Y1 C2Y H2Y3 98.4 109.5
H2Y2 C2Y H2Y3 112.1 109.5
H2Z1 C2Z H2Z2 112.1 109.4
H2Z1 C2Z H2Z3 98.3 109.5
H2Z2 C2Z H2Z3 112.0 109.5
C4' C3' H3' 120.1 120.0
C3' C4' C5' 120.2 119.9
C4' C5' C6' 120.2 120.0
C4' C5' H5' 120.3 120.0
C6' C5' H5' 119.5 120.0
C5' C6' H6' 119.3 120.0

Torsion Angles for 178

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O C6 180.1 179.5
O C1 C2 C2A 359.9 0.3
O C1 C2 C3 180.0 180.0
O C1 C6 C5 180.0 180.0
O C1 C6 H6 0.0 359.8
HO O C1 C2 180.0 269.5
HO O C1 C6 359.9 90.0
C2 C1 O HO 180.0 269.5
O C1 C2 C6 179.9 180.5
C2 C1 C6 C5 359.9 0.5
C2 C1 C6 H6 179.9 180.3
C2A C2 C1 C3 180.0 180.3
C1 C2 C2A C2B 240.2 119.7
C1 C2 C2A C2G 119.5 239.8
C1 C2 C2A H2A 359.9 359.8
C1 C2 C3 C4 360.0 0.2
C1 C2 C3 H3 180.0 180.2
C6 C1 O HO 359.9 90.0
O C1 C6 C2 180.1 179.5
C6 C1 C2 C2A 180.0 179.8
C6 C1 C2 C3 0.1 359.5
C4 C5 C6 C1 0.1 359.7
C1 C6 C5 H5 180.1 179.8
C5 C6 C1 H6 180.0 180.2
C2A C2 C1 C6 180.0 179.8
C1 C2 C2A C3 180.0 179.7
C2A C2 C3 C4 180.0 180.0
C2A C2 C3 H3 360.0 360.0
C2B C2A C2 C2G 120.7 240.0
C2B C2A C2 H2A 240.4 120.0
C2 C2A C2B H2B1 54.7 180.0
C2 C2A C2B H2B2 180.0 300.0
C2 C2A C2B H2B3 305.3 60.0
C2G C2A C2 H2A 119.7 240.0
C2 C2A C2G H2G1 54.7 300.0
C2 C2A C2G H2G2 180.0 60.0
C2 C2A C2G H2G3 305.3 180.0
C3 C2 C1 C6 0.1 359.5
C1 C2 C3 C2A 180.0 180.3
C3 C2 C2A C2B 60.2 300.0
C3 C2 C2A C2G 299.5 60.0
C3 C2 C2A H2A 179.8 180.0
C4 C3 C2 H3 180.0 180.0
C2 C3 C4 C5 0.0 360.0
C2 C3 C4 S 180.0 180.0
C2B C2A C2 C3 60.2 300.0
C2 C2A C2B C2G 239.2 120.1
C2 C2A C2B H2A 119.5 240.0
C2G C2A C2B H2A 240.3 119.9
C2B C2A C2G H2G1 293.9 60.1
C2B C2A C2G H2G2 59.2 180.0
C2B C2A C2G H2G3 184.4 300.1
H2B1 C2B C2A H2B2 234.8 240.0
H2B1 C2B C2A H2B3 109.4 120.0
H2B2 C2B C2A H2B3 234.7 240.0
C2G C2A C2 C3 299.5 60.0
C2 C2A C2G C2B 120.8 240.0
C2 C2A C2G H2A 240.5 120.0
C2B C2A C2G H2A 119.6 240.1
C2G C2A C2B H2B1 175.5 59.9
C2G C2A C2B H2B2 300.8 179.9
C2G C2A C2B H2B3 66.1 299.9
H2G1 C2G C2A H2G2 234.7 240.1
H2G1 C2G C2A H2G3 109.5 120.0
H2G2 C2G C2A H2G3 234.7 240.0
H2A C2A C2 C3 179.8 180.0
C2 C2A H2A C2B 240.0 120.0
C2 C2A H2A C2G 120.0 240.0
C2B C2A H2A C2G 240.1 119.9
H2A C2A C2B H2B1 295.2 300.0
H2A C2A C2B H2B2 60.4 60.0
H2A C2A C2B H2B3 185.8 180.0
H2A C2A C2G H2G1 174.3 180.0
H2A C2A C2G H2G2 299.5 299.9
H2A C2A C2G H2G3 64.8 60.0
H2B1 C2B C2A C2G 175.5 59.9
H2B1 C2B C2A H2A 295.2 300.0
C2A C2B H2B1 H2B2 124.0 120.0
C2A C2B H2B1 H2B3 242.0 240.0
H2B2 C2B H2B1 H2B3 118.0 119.9
H2B2 C2B C2A C2G 300.8 179.9
H2B2 C2B C2A H2A 60.4 60.0
C2A C2B H2B2 H2B1 234.7 240.0
C2A C2B H2B2 H2B3 125.3 120.0
H2B1 C2B H2B2 H2B3 250.5 240.0
H2B3 C2B C2A C2G 66.1 299.9
H2B3 C2B C2A H2A 185.8 180.0
C2A C2B H2B3 H2B1 118.0 120.0
C2A C2B H2B3 H2B2 235.9 240.0
H2B1 C2B H2B3 H2B2 118.0 120.0
H2G1 C2G C2A H2A 174.3 180.0
C2A C2G H2G1 H2G2 124.0 120.0
C2A C2G H2G1 H2G3 242.0 239.9
H2G2 C2G H2G1 H2G3 118.0 120.0
H2G2 C2G C2A H2A 299.5 299.9
C2A C2G H2G2 H2G1 234.8 240.0
C2A C2G H2G2 H2G3 125.2 120.1
H2G1 C2G H2G2 H2G3 250.5 240.0
H2G3 C2G C2A H2A 64.8 60.0
C2A C2G H2G3 H2G1 118.0 120.0
C2A C2G H2G3 H2G2 236.0 240.0
H2G1 C2G H2G3 H2G2 118.1 119.9
C2 C3 C4 H3 180.0 180.0
C5 C4 C3 S 180.1 179.9
C3 C4 C5 C6 360.0 0.0
C3 C4 C5 H5 180.0 180.0
C3 C4 S C4' 291.6 174.2
C2 C3 H3 C4 180.0 180.0
H3 C3 C4 C5 180.0 180.0
H3 C3 C4 S 359.9 0.1
C1 C6 C5 C4 0.1 359.7
C5 C4 C3 H3 180.0 180.0
C3 C4 C5 S 179.9 180.1
C5 C4 S C4' 111.5 354.2
C6 C5 C4 H5 180.0 180.1
C4 C5 C6 H6 180.1 179.9
S C4 C3 H3 359.9 0.1
C3 C4 S C5 180.1 179.9
S C4 C5 C6 180.0 180.0
S C4 C5 H5 0.0 359.9
C4 S C4' C3' 296.7 274.5
C4 S C4' C5' 116.7 94.9
C1 C6 C5 H6 180.0 179.8
C6 C5 C4 S 180.0 180.0
C4 C5 C6 H5 180.0 179.9
H5 C5 C4 S 0.0 359.9
C4 C5 H5 C6 180.0 180.1
H5 C5 C6 H6 0.1 0.0
C1 C6 H6 C5 180.0 180.2
H6 C6 C5 H5 0.1 0.0
C2' C3' C4' S 180.0 179.8
S C4' C3' H3' 0.0 0.3
C3' C4' S C5' 180.0 179.6
S C4' C5' C6' 180.0 180.0
S C4' C5' H5' 360.0 359.8
C2' C1' O' C6' 179.9 180.1
O' C1' C2' C2X 0.0 360.0
O' C1' C2' C3' 180.1 179.7
O' C1' C6' C5' 180.0 180.1
O' C1' C6' H6' 360.0 0.1
HO' O' C1' C2' 180.0 270.1
HO' O' C1' C6' 0.1 90.0
C2' C1' O' HO' 180.0 270.1
O' C1' C2' C6' 180.1 179.9
C2' C1' C6' C5' 0.1 360.0
C2' C1' C6' H6' 180.1 180.0
C2X C2' C1' C3' 180.0 180.2
C1' C2' C2X C2Y 120.6 120.0
C1' C2' C2X C2Z 241.2 240.0
C1' C2' C2X H2X 0.9 0.0
C1' C2' C3' C4' 360.0 0.5
C1' C2' C3' H3' 180.0 180.0
C6' C1' O' HO' 0.1 90.0
O' C1' C6' C2' 179.9 180.1
C6' C1' C2' C2X 179.9 180.0
C6' C1' C2' C3' 360.0 359.8
C4' C5' C6' C1' 359.9 359.9
C1' C6' C5' H5' 180.0 180.1
C5' C6' C1' H6' 180.0 180.0
C2X C2' C1' C6' 179.9 180.0
C1' C2' C2X C3' 180.0 179.8
C2X C2' C3' C4' 180.0 180.3
C2X C2' C3' H3' 0.0 359.8
C2Y C2X C2' C2Z 239.4 240.1
C2Y C2X C2' H2X 119.7 120.0
C2' C2X C2Y H2Y1 54.7 180.0
C2' C2X C2Y H2Y2 180.0 300.0
C2' C2X C2Y H2Y3 305.2 59.9
C2Z C2X C2' H2X 240.3 239.9
C2' C2X C2Z H2Z1 54.7 300.0
C2' C2X C2Z H2Z2 180.0 60.0
C2' C2X C2Z H2Z3 305.3 180.0
S C4' C3' C2' 180.0 179.8
C3' C2' C1' C6' 360.0 359.8
C1' C2' C3' C2X 180.0 180.2
C3' C2' C2X C2Y 300.6 300.3
C3' C2' C2X C2Z 61.2 60.2
C3' C2' C2X H2X 180.9 180.2
C4' C3' C2' H3' 180.0 180.5
C2' C3' C4' C5' 0.0 359.4
C2Y C2X C2' C3' 300.6 300.3
C2' C2X C2Y C2Z 120.8 119.9
C2' C2X C2Y H2X 240.4 240.0
C2Z C2X C2Y H2X 119.7 120.1
C2Y C2X C2Z H2Z1 175.4 60.0
C2Y C2X C2Z H2Z2 300.7 180.0
C2Y C2X C2Z H2Z3 66.0 299.9
H2Y1 C2Y C2X H2Y2 234.8 240.0
H2Y1 C2Y C2X H2Y3 109.5 120.0
H2Y2 C2Y C2X H2Y3 234.7 240.0
C2Z C2X C2' C3' 61.2 60.2
C2' C2X C2Z C2Y 239.3 240.1
C2' C2X C2Z H2X 119.6 120.0
C2Y C2X C2Z H2X 240.3 240.0
C2Z C2X C2Y H2Y1 294.0 60.1
C2Z C2X C2Y H2Y2 59.2 180.0
C2Z C2X C2Y H2Y3 184.5 300.0
H2Z1 C2Z C2X H2Z2 234.7 240.0
H2Z1 C2Z C2X H2Z3 109.5 120.0
H2Z2 C2Z C2X H2Z3 234.8 240.0
H2X C2X C2' C3' 180.9 180.2
C2' C2X H2X C2Y 120.0 120.0
C2' C2X H2X C2Z 239.9 240.0
C2Y C2X H2X C2Z 119.9 120.0
H2X C2X C2Y H2Y1 174.3 300.0
H2X C2X C2Y H2Y2 299.6 60.0
H2X C2X C2Y H2Y3 64.8 179.9
H2X C2X C2Z H2Z1 295.1 180.0
H2X C2X C2Z H2Z2 60.4 300.0
H2X C2X C2Z H2Z3 185.7 60.0
H2Y1 C2Y C2X C2Z 294.0 60.1
H2Y1 C2Y C2X H2X 174.3 300.0
C2X C2Y H2Y1 H2Y2 124.0 119.9
C2X C2Y H2Y1 H2Y3 242.0 240.0
H2Y2 C2Y H2Y1 H2Y3 118.0 120.0
H2Y2 C2Y C2X C2Z 59.2 180.0
H2Y2 C2Y C2X H2X 299.6 60.0
C2X C2Y H2Y2 H2Y1 234.8 240.1
C2X C2Y H2Y2 H2Y3 125.2 120.0
H2Y1 C2Y H2Y2 H2Y3 250.5 239.9
H2Y3 C2Y C2X C2Z 184.5 300.0
H2Y3 C2Y C2X H2X 64.8 179.9
C2X C2Y H2Y3 H2Y1 118.0 120.0
C2X C2Y H2Y3 H2Y2 236.0 240.1
H2Y1 C2Y H2Y3 H2Y2 118.0 120.1
H2Z1 C2Z C2X H2X 295.1 180.0
C2X C2Z H2Z1 H2Z2 124.1 120.0
C2X C2Z H2Z1 H2Z3 242.0 240.0
H2Z2 C2Z H2Z1 H2Z3 117.9 120.0
H2Z2 C2Z C2X H2X 60.4 300.0
C2X C2Z H2Z2 H2Z1 234.7 239.9
C2X C2Z H2Z2 H2Z3 125.3 120.0
H2Z1 C2Z H2Z2 H2Z3 250.6 240.0
H2Z3 C2Z C2X H2X 185.7 60.0
C2X C2Z H2Z3 H2Z1 118.0 120.1
C2X C2Z H2Z3 H2Z2 235.9 240.0
H2Z1 C2Z H2Z3 H2Z2 118.0 120.0
S C4' C3' C5' 180.0 180.4
C2' C3' C4' H3' 180.0 179.5
C3' C4' C5' C6' 0.0 0.4
C3' C4' C5' H5' 180.0 180.2
C2' C3' H3' C4' 180.0 180.5
H3' C3' C4' C5' 180.0 179.9
S C4' C5' C3' 180.0 179.6
C1' C6' C5' C4' 359.9 359.9
C5' C4' C3' H3' 180.0 179.9
C6' C5' C4' H5' 180.0 180.1
C4' C5' C6' H6' 179.9 179.9
C1' C6' C5' H6' 180.0 180.0
C4' C5' C6' H5' 180.0 179.9
C4' C5' H5' C6' 180.0 180.1
H5' C5' C6' H6' 359.9 0.0
C1' C6' H6' C5' 180.0 180.0
H6' C6' C5' H5' 359.9 0.0