Atom Nomenclature for 176

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 176

Atom Name (V3) Atom Name (V2)
CD1 CD1
CE1 CE1
CZ1 CZ1
CE2 CE2
CD2 CD2
CG1 CG1
CB0 CB0
CA0 CA0
C0 C0
O0 O0
N0 N0
CG2 CG2
CD3 CD3
CE3 CE3
CZ2 CZ2
CE4 CE4
CD4 CD4
N N
CA CA
C C
O O
CB CB
CG CG
CD CD
N' N'
CA' CA'
CB' CB'
CG' CG'
CD' CD'
CE' CE'
CDB CD'A
CGB CG'A
CL1 CL1
CL2 CL2
HD1 HD1
HE1 HE1
HZ1 HZ1
HE2 HE2
HD2 HD2
HB0 HB0
HA0 HA0
HN01 HN01
HN02 HN02
HD3 HD3
HE3 HE3
HZ2 HZ2
HE4 HE4
HD4 HD4
HA HA
HB1 HB1
HB2 HB2
HG1 HG1
HG2 HG2
HD1A HD1A
HD2A HD2A
HN' HN'
HA11 HA11
HA12 HA12
HD' HD'
HE' HE'
HG' HG'