Atom Nomenclature for 16E

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 16E

Atom Name (V3) Atom Name (V2)
O01 O01
C02 C02
N03 N03
C04 C04
C05 C05
C06 C06
C07 C07
O08 O08
C09 C09
O10 O10
O11 O11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
O27 O27
O28 O28
OXT OXT
H03 H03
H121 H121
H122 H122
H04 H04
H051 H051
H052 H052
H061 H061
H062 H062
HXT HXT
H11 H11
H131 H131
H132 H132
H141 H141
H142 H142
H151 H151
H152 H152
H161 H161
H162 H162
H171 H171
H172 H172
H181 H181
H182 H182
H191 H191
H192 H192
H201 H201
H202 H202
H211 H211
H212 H212
H221 H221
H222 H222
H231 H231
H232 H232
H241 H241
H242 H242
H251 H251
H252 H252
H28 H28