PDB Chemical Component 16D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 16D

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C1 1.502 1.469
N1 HN11 1.019 1.009
N1 HN12 1.021 1.009
C1 C2 1.546 1.529
C1 H11 1.114 1.090
C1 H12 1.115 1.089
C2 C3 1.496 1.529
C2 H21 1.115 1.089
C2 H22 1.116 1.090
C3 C4 1.477 1.529
C3 H31 1.116 1.090
C3 H32 1.114 1.090
C4 C5 1.457 1.529
C4 H41 1.115 1.089
C4 H42 1.116 1.091
C5 C6 1.322 1.529
C5 H51 1.115 1.090
C5 H52 1.114 1.089
C6 N2 1.325 1.469
C6 H61 1.115 1.089
C6 H62 1.115 1.090
N2 HN21 1.020 1.009
N2 HN22 1.020 1.009

Bond Angles for 16D

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 N1 HN11 110.8 106.7
C1 N1 HN12 111.7 106.7
N1 C1 C2 110.8 109.5
N1 C1 H11 111.8 109.4
N1 C1 H12 111.7 109.4
HN11 N1 HN12 111.7 106.7
C2 C1 H11 111.7 109.5
C2 C1 H12 111.7 109.5
C1 C2 C3 112.3 109.5
C1 C2 H21 111.2 109.5
C1 C2 H22 111.2 109.5
H11 C1 H12 98.7 109.4
C3 C2 H21 111.2 109.4
C3 C2 H22 111.1 109.4
C2 C3 C4 114.5 109.6
C2 C3 H31 110.3 109.5
C2 C3 H32 110.4 109.5
H21 C2 H22 99.1 109.4
C4 C3 H31 110.3 109.4
C4 C3 H32 110.3 109.5
C3 C4 C5 107.0 109.6
C3 C4 H41 113.1 109.4
C3 C4 H42 113.1 109.4
H31 C3 H32 99.9 109.4
C5 C4 H41 113.2 109.5
C5 C4 H42 113.1 109.5
C4 C5 C6 126.5 109.5
C4 C5 H51 106.2 109.4
C4 C5 H52 106.2 109.4
H41 C4 H42 97.3 109.4
C6 C5 H51 106.2 109.5
C6 C5 H52 106.2 109.5
C5 C6 N2 118.0 109.5
C5 C6 H61 109.2 109.5
C5 C6 H62 109.2 109.5
H51 C5 H52 103.3 109.4
N2 C6 H61 109.1 109.4
N2 C6 H62 109.1 109.4
C6 N2 HN21 118.1 106.7
C6 N2 HN22 109.1 106.7
H61 C6 H62 101.0 109.4
HN21 N2 HN22 109.1 106.7

Torsion Angles for 16D

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HN11 N1 C1 HN12 125.2 246.2
C2 C1 N1 H11 234.8 120.0
C2 C1 N1 H12 125.2 240.0
N1 C1 C2 C3 43.9 180.0
N1 C1 C2 H21 169.2 60.0
N1 C1 C2 H22 278.7 300.0
H11 C1 N1 H12 250.4 119.9
C1 N1 HN11 HN12 234.8 113.8
HN11 N1 C1 C2 180.0 180.0
HN11 N1 C1 H11 305.2 60.0
HN11 N1 C1 H12 54.8 300.0
C1 N1 HN12 HN11 124.7 246.2
HN12 N1 C1 C2 54.7 293.8
HN12 N1 C1 H11 180.0 173.8
HN12 N1 C1 H12 289.5 53.8
C2 C1 N1 HN11 180.0 180.0
C2 C1 N1 HN12 54.7 293.8
N1 C1 C2 H11 125.3 240.0
N1 C1 C2 H12 234.8 120.0
H11 C1 C2 H12 109.5 240.0
C3 C2 C1 H21 234.7 120.0
C3 C2 C1 H22 125.2 240.0
C1 C2 C3 C4 154.3 180.0
C1 C2 C3 H31 279.5 60.0
C1 C2 C3 H32 29.0 300.1
H21 C2 C1 H22 250.5 120.0
H11 C1 N1 HN11 305.2 60.0
H11 C1 N1 HN12 180.0 173.8
N1 C1 H11 C2 235.3 120.0
N1 C1 H11 H12 117.7 240.1
C2 C1 H11 H12 242.4 120.0
H11 C1 C2 C3 278.6 300.0
H11 C1 C2 H21 43.9 180.0
H11 C1 C2 H22 153.4 60.0
H12 C1 N1 HN11 54.8 300.0
H12 C1 N1 HN12 289.5 53.8
N1 C1 H12 C2 124.7 239.9
N1 C1 H12 H11 242.3 119.9
C2 C1 H12 H11 117.6 240.0
H12 C1 C2 C3 169.1 60.0
H12 C1 C2 H21 294.4 300.0
H12 C1 C2 H22 43.9 180.0
C3 C2 C1 H11 278.6 300.0
C3 C2 C1 H12 169.1 60.0
C1 C2 C3 H21 125.3 240.0
C1 C2 C3 H22 234.7 120.0
H21 C2 C3 H22 109.4 240.1
C4 C3 C2 H31 234.8 120.0
C4 C3 C2 H32 125.3 239.9
C2 C3 C4 C5 180.7 180.0
C2 C3 C4 H41 306.0 59.9
C2 C3 C4 H42 55.4 300.1
H31 C3 C2 H32 250.5 119.9
H21 C2 C1 H11 43.9 180.0
H21 C2 C1 H12 294.4 300.0
C1 C2 H21 C3 234.1 120.1
C1 C2 H21 H22 117.1 240.0
C3 C2 H21 H22 243.0 119.9
H21 C2 C3 C4 29.0 300.0
H21 C2 C3 H31 154.2 180.1
H21 C2 C3 H32 263.7 60.1
H22 C2 C1 H11 153.4 60.0
H22 C2 C1 H12 43.9 180.0
C1 C2 H22 C3 125.9 240.0
C1 C2 H22 H21 242.9 120.0
C3 C2 H22 H21 117.1 240.1
H22 C2 C3 C4 279.6 60.0
H22 C2 C3 H31 44.8 300.0
H22 C2 C3 H32 154.3 180.0
C4 C3 C2 H21 29.0 300.0
C4 C3 C2 H22 279.6 60.0
C2 C3 C4 H31 125.2 240.0
C2 C3 C4 H32 234.7 120.1
H31 C3 C4 H32 109.5 240.1
C5 C4 C3 H41 234.7 120.1
C5 C4 C3 H42 125.2 239.9
C3 C4 C5 C6 228.1 180.0
C3 C4 C5 H51 353.3 60.0
C3 C4 C5 H52 102.8 300.0
H41 C4 C3 H42 250.5 119.9
H31 C3 C2 H21 154.2 180.1
H31 C3 C2 H22 44.8 300.0
C2 C3 H31 C4 232.4 120.1
C2 C3 H31 H32 116.2 240.0
C4 C3 H31 H32 243.8 119.9
H31 C3 C4 C5 55.4 300.0
H31 C3 C4 H41 180.7 180.0
H31 C3 C4 H42 290.2 60.1
H32 C3 C2 H21 263.7 60.1
H32 C3 C2 H22 154.3 180.0
C2 C3 H32 C4 127.6 239.9
C2 C3 H32 H31 243.8 120.0
C4 C3 H32 H31 116.2 240.1
H32 C3 C4 C5 305.9 59.9
H32 C3 C4 H41 71.2 299.9
H32 C3 C4 H42 180.7 180.0
C5 C4 C3 H31 55.4 300.0
C5 C4 C3 H32 305.9 59.9
C3 C4 C5 H41 125.3 240.0
C3 C4 C5 H42 234.8 120.0
H41 C4 C5 H42 109.5 240.1
C6 C5 C4 H51 234.8 120.0
C6 C5 C4 H52 125.2 240.0
C4 C5 C6 N2 339.1 180.0
C4 C5 C6 H61 104.3 60.0
C4 C5 C6 H62 213.8 300.0
H51 C5 C4 H52 250.5 119.9
H41 C4 C3 H31 180.7 180.0
H41 C4 C3 H32 71.2 299.9
C3 C4 H41 C5 238.1 120.1
C3 C4 H41 H42 119.0 240.1
C5 C4 H41 H42 241.0 120.0
H41 C4 C5 C6 102.8 300.0
H41 C4 C5 H51 228.0 180.0
H41 C4 C5 H52 337.5 60.1
H42 C4 C3 H31 290.2 60.1
H42 C4 C3 H32 180.7 180.0
C3 C4 H42 C5 121.9 239.9
C3 C4 H42 H41 240.9 119.9
C5 C4 H42 H41 119.1 240.0
H42 C4 C5 C6 353.3 60.0
H42 C4 C5 H51 118.5 299.9
H42 C4 C5 H52 228.1 180.0
C6 C5 C4 H41 102.8 300.0
C6 C5 C4 H42 353.3 60.0
C4 C5 C6 H51 125.2 240.0
C4 C5 C6 H52 234.7 120.0
H51 C5 C6 H52 109.5 240.0
N2 C6 C5 H61 234.8 120.0
N2 C6 C5 H62 125.3 240.0
C5 C6 N2 HN21 180.0 180.0
C5 C6 N2 HN22 54.8 293.8
H61 C6 C5 H62 250.5 120.0
H51 C5 C4 H41 228.0 180.0
H51 C5 C4 H42 118.5 299.9
C4 C5 H51 C6 223.1 120.0
C4 C5 H51 H52 111.6 240.1
C6 C5 H51 H52 248.5 120.0
H51 C5 C6 N2 213.8 300.0
H51 C5 C6 H61 339.1 180.0
H51 C5 C6 H62 88.6 60.0
H52 C5 C4 H41 337.5 60.1
H52 C5 C4 H42 228.1 180.0
C4 C5 H52 C6 136.9 239.9
C4 C5 H52 H51 248.4 119.9
C6 C5 H52 H51 111.5 240.0
H52 C5 C6 N2 104.3 60.0
H52 C5 C6 H61 229.6 300.0
H52 C5 C6 H62 339.1 180.0
N2 C6 C5 H51 213.8 300.0
N2 C6 C5 H52 104.3 60.0
C5 C6 N2 H61 125.3 240.0
C5 C6 N2 H62 234.7 120.0
H61 C6 N2 H62 109.4 240.1
HN21 N2 C6 HN22 125.3 246.2
H61 C6 C5 H51 339.1 180.0
H61 C6 C5 H52 229.6 300.0
C5 C6 H61 N2 229.7 120.1
C5 C6 H61 H62 114.9 240.0
N2 C6 H61 H62 245.2 119.9
H61 C6 N2 HN21 54.7 300.0
H61 C6 N2 HN22 289.5 53.8
H62 C6 C5 H51 88.6 60.0
H62 C6 C5 H52 339.1 180.0
C5 C6 H62 N2 130.3 240.0
C5 C6 H62 H61 245.1 120.0
N2 C6 H62 H61 114.8 240.1
H62 C6 N2 HN21 305.3 60.0
H62 C6 N2 HN22 180.1 173.8
HN21 N2 C6 H61 54.7 300.0
HN21 N2 C6 H62 305.3 60.0
C6 N2 HN21 HN22 234.7 113.8
HN22 N2 C6 H61 289.5 53.8
HN22 N2 C6 H62 180.1 173.8
C6 N2 HN22 HN21 130.3 246.2