PDB Chemical Component 16D
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 16D
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C1 |
1.502 |
1.469 |
N1 |
HN11 |
1.019 |
1.009 |
N1 |
HN12 |
1.021 |
1.009 |
C1 |
C2 |
1.546 |
1.529 |
C1 |
H11 |
1.114 |
1.090 |
C1 |
H12 |
1.115 |
1.089 |
C2 |
C3 |
1.496 |
1.529 |
C2 |
H21 |
1.115 |
1.089 |
C2 |
H22 |
1.116 |
1.090 |
C3 |
C4 |
1.477 |
1.529 |
C3 |
H31 |
1.116 |
1.090 |
C3 |
H32 |
1.114 |
1.090 |
C4 |
C5 |
1.457 |
1.529 |
C4 |
H41 |
1.115 |
1.089 |
C4 |
H42 |
1.116 |
1.091 |
C5 |
C6 |
1.322 |
1.529 |
C5 |
H51 |
1.115 |
1.090 |
C5 |
H52 |
1.114 |
1.089 |
C6 |
N2 |
1.325 |
1.469 |
C6 |
H61 |
1.115 |
1.089 |
C6 |
H62 |
1.115 |
1.090 |
N2 |
HN21 |
1.020 |
1.009 |
N2 |
HN22 |
1.020 |
1.009 |
Bond Angles for 16D
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1 |
N1 |
HN11 |
110.8 |
106.7 |
C1 |
N1 |
HN12 |
111.7 |
106.7 |
N1 |
C1 |
C2 |
110.8 |
109.5 |
N1 |
C1 |
H11 |
111.8 |
109.4 |
N1 |
C1 |
H12 |
111.7 |
109.4 |
HN11 |
N1 |
HN12 |
111.7 |
106.7 |
C2 |
C1 |
H11 |
111.7 |
109.5 |
C2 |
C1 |
H12 |
111.7 |
109.5 |
C1 |
C2 |
C3 |
112.3 |
109.5 |
C1 |
C2 |
H21 |
111.2 |
109.5 |
C1 |
C2 |
H22 |
111.2 |
109.5 |
H11 |
C1 |
H12 |
98.7 |
109.4 |
C3 |
C2 |
H21 |
111.2 |
109.4 |
C3 |
C2 |
H22 |
111.1 |
109.4 |
C2 |
C3 |
C4 |
114.5 |
109.6 |
C2 |
C3 |
H31 |
110.3 |
109.5 |
C2 |
C3 |
H32 |
110.4 |
109.5 |
H21 |
C2 |
H22 |
99.1 |
109.4 |
C4 |
C3 |
H31 |
110.3 |
109.4 |
C4 |
C3 |
H32 |
110.3 |
109.5 |
C3 |
C4 |
C5 |
107.0 |
109.6 |
C3 |
C4 |
H41 |
113.1 |
109.4 |
C3 |
C4 |
H42 |
113.1 |
109.4 |
H31 |
C3 |
H32 |
99.9 |
109.4 |
C5 |
C4 |
H41 |
113.2 |
109.5 |
C5 |
C4 |
H42 |
113.1 |
109.5 |
C4 |
C5 |
C6 |
126.5 |
109.5 |
C4 |
C5 |
H51 |
106.2 |
109.4 |
C4 |
C5 |
H52 |
106.2 |
109.4 |
H41 |
C4 |
H42 |
97.3 |
109.4 |
C6 |
C5 |
H51 |
106.2 |
109.5 |
C6 |
C5 |
H52 |
106.2 |
109.5 |
C5 |
C6 |
N2 |
118.0 |
109.5 |
C5 |
C6 |
H61 |
109.2 |
109.5 |
C5 |
C6 |
H62 |
109.2 |
109.5 |
H51 |
C5 |
H52 |
103.3 |
109.4 |
N2 |
C6 |
H61 |
109.1 |
109.4 |
N2 |
C6 |
H62 |
109.1 |
109.4 |
C6 |
N2 |
HN21 |
118.1 |
106.7 |
C6 |
N2 |
HN22 |
109.1 |
106.7 |
H61 |
C6 |
H62 |
101.0 |
109.4 |
HN21 |
N2 |
HN22 |
109.1 |
106.7 |
Torsion Angles for 16D
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
HN11 |
N1 |
C1 |
HN12 |
125.2 |
246.2 |
C2 |
C1 |
N1 |
H11 |
234.8 |
120.0 |
C2 |
C1 |
N1 |
H12 |
125.2 |
240.0 |
N1 |
C1 |
C2 |
C3 |
43.9 |
180.0 |
N1 |
C1 |
C2 |
H21 |
169.2 |
60.0 |
N1 |
C1 |
C2 |
H22 |
278.7 |
300.0 |
H11 |
C1 |
N1 |
H12 |
250.4 |
119.9 |
C1 |
N1 |
HN11 |
HN12 |
234.8 |
113.8 |
HN11 |
N1 |
C1 |
C2 |
180.0 |
180.0 |
HN11 |
N1 |
C1 |
H11 |
305.2 |
60.0 |
HN11 |
N1 |
C1 |
H12 |
54.8 |
300.0 |
C1 |
N1 |
HN12 |
HN11 |
124.7 |
246.2 |
HN12 |
N1 |
C1 |
C2 |
54.7 |
293.8 |
HN12 |
N1 |
C1 |
H11 |
180.0 |
173.8 |
HN12 |
N1 |
C1 |
H12 |
289.5 |
53.8 |
C2 |
C1 |
N1 |
HN11 |
180.0 |
180.0 |
C2 |
C1 |
N1 |
HN12 |
54.7 |
293.8 |
N1 |
C1 |
C2 |
H11 |
125.3 |
240.0 |
N1 |
C1 |
C2 |
H12 |
234.8 |
120.0 |
H11 |
C1 |
C2 |
H12 |
109.5 |
240.0 |
C3 |
C2 |
C1 |
H21 |
234.7 |
120.0 |
C3 |
C2 |
C1 |
H22 |
125.2 |
240.0 |
C1 |
C2 |
C3 |
C4 |
154.3 |
180.0 |
C1 |
C2 |
C3 |
H31 |
279.5 |
60.0 |
C1 |
C2 |
C3 |
H32 |
29.0 |
300.1 |
H21 |
C2 |
C1 |
H22 |
250.5 |
120.0 |
H11 |
C1 |
N1 |
HN11 |
305.2 |
60.0 |
H11 |
C1 |
N1 |
HN12 |
180.0 |
173.8 |
N1 |
C1 |
H11 |
C2 |
235.3 |
120.0 |
N1 |
C1 |
H11 |
H12 |
117.7 |
240.1 |
C2 |
C1 |
H11 |
H12 |
242.4 |
120.0 |
H11 |
C1 |
C2 |
C3 |
278.6 |
300.0 |
H11 |
C1 |
C2 |
H21 |
43.9 |
180.0 |
H11 |
C1 |
C2 |
H22 |
153.4 |
60.0 |
H12 |
C1 |
N1 |
HN11 |
54.8 |
300.0 |
H12 |
C1 |
N1 |
HN12 |
289.5 |
53.8 |
N1 |
C1 |
H12 |
C2 |
124.7 |
239.9 |
N1 |
C1 |
H12 |
H11 |
242.3 |
119.9 |
C2 |
C1 |
H12 |
H11 |
117.6 |
240.0 |
H12 |
C1 |
C2 |
C3 |
169.1 |
60.0 |
H12 |
C1 |
C2 |
H21 |
294.4 |
300.0 |
H12 |
C1 |
C2 |
H22 |
43.9 |
180.0 |
C3 |
C2 |
C1 |
H11 |
278.6 |
300.0 |
C3 |
C2 |
C1 |
H12 |
169.1 |
60.0 |
C1 |
C2 |
C3 |
H21 |
125.3 |
240.0 |
C1 |
C2 |
C3 |
H22 |
234.7 |
120.0 |
H21 |
C2 |
C3 |
H22 |
109.4 |
240.1 |
C4 |
C3 |
C2 |
H31 |
234.8 |
120.0 |
C4 |
C3 |
C2 |
H32 |
125.3 |
239.9 |
C2 |
C3 |
C4 |
C5 |
180.7 |
180.0 |
C2 |
C3 |
C4 |
H41 |
306.0 |
59.9 |
C2 |
C3 |
C4 |
H42 |
55.4 |
300.1 |
H31 |
C3 |
C2 |
H32 |
250.5 |
119.9 |
H21 |
C2 |
C1 |
H11 |
43.9 |
180.0 |
H21 |
C2 |
C1 |
H12 |
294.4 |
300.0 |
C1 |
C2 |
H21 |
C3 |
234.1 |
120.1 |
C1 |
C2 |
H21 |
H22 |
117.1 |
240.0 |
C3 |
C2 |
H21 |
H22 |
243.0 |
119.9 |
H21 |
C2 |
C3 |
C4 |
29.0 |
300.0 |
H21 |
C2 |
C3 |
H31 |
154.2 |
180.1 |
H21 |
C2 |
C3 |
H32 |
263.7 |
60.1 |
H22 |
C2 |
C1 |
H11 |
153.4 |
60.0 |
H22 |
C2 |
C1 |
H12 |
43.9 |
180.0 |
C1 |
C2 |
H22 |
C3 |
125.9 |
240.0 |
C1 |
C2 |
H22 |
H21 |
242.9 |
120.0 |
C3 |
C2 |
H22 |
H21 |
117.1 |
240.1 |
H22 |
C2 |
C3 |
C4 |
279.6 |
60.0 |
H22 |
C2 |
C3 |
H31 |
44.8 |
300.0 |
H22 |
C2 |
C3 |
H32 |
154.3 |
180.0 |
C4 |
C3 |
C2 |
H21 |
29.0 |
300.0 |
C4 |
C3 |
C2 |
H22 |
279.6 |
60.0 |
C2 |
C3 |
C4 |
H31 |
125.2 |
240.0 |
C2 |
C3 |
C4 |
H32 |
234.7 |
120.1 |
H31 |
C3 |
C4 |
H32 |
109.5 |
240.1 |
C5 |
C4 |
C3 |
H41 |
234.7 |
120.1 |
C5 |
C4 |
C3 |
H42 |
125.2 |
239.9 |
C3 |
C4 |
C5 |
C6 |
228.1 |
180.0 |
C3 |
C4 |
C5 |
H51 |
353.3 |
60.0 |
C3 |
C4 |
C5 |
H52 |
102.8 |
300.0 |
H41 |
C4 |
C3 |
H42 |
250.5 |
119.9 |
H31 |
C3 |
C2 |
H21 |
154.2 |
180.1 |
H31 |
C3 |
C2 |
H22 |
44.8 |
300.0 |
C2 |
C3 |
H31 |
C4 |
232.4 |
120.1 |
C2 |
C3 |
H31 |
H32 |
116.2 |
240.0 |
C4 |
C3 |
H31 |
H32 |
243.8 |
119.9 |
H31 |
C3 |
C4 |
C5 |
55.4 |
300.0 |
H31 |
C3 |
C4 |
H41 |
180.7 |
180.0 |
H31 |
C3 |
C4 |
H42 |
290.2 |
60.1 |
H32 |
C3 |
C2 |
H21 |
263.7 |
60.1 |
H32 |
C3 |
C2 |
H22 |
154.3 |
180.0 |
C2 |
C3 |
H32 |
C4 |
127.6 |
239.9 |
C2 |
C3 |
H32 |
H31 |
243.8 |
120.0 |
C4 |
C3 |
H32 |
H31 |
116.2 |
240.1 |
H32 |
C3 |
C4 |
C5 |
305.9 |
59.9 |
H32 |
C3 |
C4 |
H41 |
71.2 |
299.9 |
H32 |
C3 |
C4 |
H42 |
180.7 |
180.0 |
C5 |
C4 |
C3 |
H31 |
55.4 |
300.0 |
C5 |
C4 |
C3 |
H32 |
305.9 |
59.9 |
C3 |
C4 |
C5 |
H41 |
125.3 |
240.0 |
C3 |
C4 |
C5 |
H42 |
234.8 |
120.0 |
H41 |
C4 |
C5 |
H42 |
109.5 |
240.1 |
C6 |
C5 |
C4 |
H51 |
234.8 |
120.0 |
C6 |
C5 |
C4 |
H52 |
125.2 |
240.0 |
C4 |
C5 |
C6 |
N2 |
339.1 |
180.0 |
C4 |
C5 |
C6 |
H61 |
104.3 |
60.0 |
C4 |
C5 |
C6 |
H62 |
213.8 |
300.0 |
H51 |
C5 |
C4 |
H52 |
250.5 |
119.9 |
H41 |
C4 |
C3 |
H31 |
180.7 |
180.0 |
H41 |
C4 |
C3 |
H32 |
71.2 |
299.9 |
C3 |
C4 |
H41 |
C5 |
238.1 |
120.1 |
C3 |
C4 |
H41 |
H42 |
119.0 |
240.1 |
C5 |
C4 |
H41 |
H42 |
241.0 |
120.0 |
H41 |
C4 |
C5 |
C6 |
102.8 |
300.0 |
H41 |
C4 |
C5 |
H51 |
228.0 |
180.0 |
H41 |
C4 |
C5 |
H52 |
337.5 |
60.1 |
H42 |
C4 |
C3 |
H31 |
290.2 |
60.1 |
H42 |
C4 |
C3 |
H32 |
180.7 |
180.0 |
C3 |
C4 |
H42 |
C5 |
121.9 |
239.9 |
C3 |
C4 |
H42 |
H41 |
240.9 |
119.9 |
C5 |
C4 |
H42 |
H41 |
119.1 |
240.0 |
H42 |
C4 |
C5 |
C6 |
353.3 |
60.0 |
H42 |
C4 |
C5 |
H51 |
118.5 |
299.9 |
H42 |
C4 |
C5 |
H52 |
228.1 |
180.0 |
C6 |
C5 |
C4 |
H41 |
102.8 |
300.0 |
C6 |
C5 |
C4 |
H42 |
353.3 |
60.0 |
C4 |
C5 |
C6 |
H51 |
125.2 |
240.0 |
C4 |
C5 |
C6 |
H52 |
234.7 |
120.0 |
H51 |
C5 |
C6 |
H52 |
109.5 |
240.0 |
N2 |
C6 |
C5 |
H61 |
234.8 |
120.0 |
N2 |
C6 |
C5 |
H62 |
125.3 |
240.0 |
C5 |
C6 |
N2 |
HN21 |
180.0 |
180.0 |
C5 |
C6 |
N2 |
HN22 |
54.8 |
293.8 |
H61 |
C6 |
C5 |
H62 |
250.5 |
120.0 |
H51 |
C5 |
C4 |
H41 |
228.0 |
180.0 |
H51 |
C5 |
C4 |
H42 |
118.5 |
299.9 |
C4 |
C5 |
H51 |
C6 |
223.1 |
120.0 |
C4 |
C5 |
H51 |
H52 |
111.6 |
240.1 |
C6 |
C5 |
H51 |
H52 |
248.5 |
120.0 |
H51 |
C5 |
C6 |
N2 |
213.8 |
300.0 |
H51 |
C5 |
C6 |
H61 |
339.1 |
180.0 |
H51 |
C5 |
C6 |
H62 |
88.6 |
60.0 |
H52 |
C5 |
C4 |
H41 |
337.5 |
60.1 |
H52 |
C5 |
C4 |
H42 |
228.1 |
180.0 |
C4 |
C5 |
H52 |
C6 |
136.9 |
239.9 |
C4 |
C5 |
H52 |
H51 |
248.4 |
119.9 |
C6 |
C5 |
H52 |
H51 |
111.5 |
240.0 |
H52 |
C5 |
C6 |
N2 |
104.3 |
60.0 |
H52 |
C5 |
C6 |
H61 |
229.6 |
300.0 |
H52 |
C5 |
C6 |
H62 |
339.1 |
180.0 |
N2 |
C6 |
C5 |
H51 |
213.8 |
300.0 |
N2 |
C6 |
C5 |
H52 |
104.3 |
60.0 |
C5 |
C6 |
N2 |
H61 |
125.3 |
240.0 |
C5 |
C6 |
N2 |
H62 |
234.7 |
120.0 |
H61 |
C6 |
N2 |
H62 |
109.4 |
240.1 |
HN21 |
N2 |
C6 |
HN22 |
125.3 |
246.2 |
H61 |
C6 |
C5 |
H51 |
339.1 |
180.0 |
H61 |
C6 |
C5 |
H52 |
229.6 |
300.0 |
C5 |
C6 |
H61 |
N2 |
229.7 |
120.1 |
C5 |
C6 |
H61 |
H62 |
114.9 |
240.0 |
N2 |
C6 |
H61 |
H62 |
245.2 |
119.9 |
H61 |
C6 |
N2 |
HN21 |
54.7 |
300.0 |
H61 |
C6 |
N2 |
HN22 |
289.5 |
53.8 |
H62 |
C6 |
C5 |
H51 |
88.6 |
60.0 |
H62 |
C6 |
C5 |
H52 |
339.1 |
180.0 |
C5 |
C6 |
H62 |
N2 |
130.3 |
240.0 |
C5 |
C6 |
H62 |
H61 |
245.1 |
120.0 |
N2 |
C6 |
H62 |
H61 |
114.8 |
240.1 |
H62 |
C6 |
N2 |
HN21 |
305.3 |
60.0 |
H62 |
C6 |
N2 |
HN22 |
180.1 |
173.8 |
HN21 |
N2 |
C6 |
H61 |
54.7 |
300.0 |
HN21 |
N2 |
C6 |
H62 |
305.3 |
60.0 |
C6 |
N2 |
HN21 |
HN22 |
234.7 |
113.8 |
HN22 |
N2 |
C6 |
H61 |
289.5 |
53.8 |
HN22 |
N2 |
C6 |
H62 |
180.1 |
173.8 |
C6 |
N2 |
HN22 |
HN21 |
130.3 |
246.2 |