PDB Chemical Component 16B

Ideal Model

Chemical Description

Name N-hydroxycytidine 5'-(dihydrogen phosphate)
Formula C9 H14 N3 O9 P
Formal charge 0
Molecular weight 339.196 g/mol
Component type RNA linking
Nonstandard Parent Id C

Chemical features

Atom count 36
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms OP3 HOP3 HO3'
Bond count 37
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) N-hydroxycytidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-[4-(oxidanylamino)-2-oxidanylidene-pyrimidin-1-yl]oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) ONC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O
SMILES (CACTVS) ONC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O
Stereo SMILES (OpenEye) C1=CN(C(=O)N=C1NO)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C9H14N3O9P/c13-6-4(3-20-22(17,18)19)21-8(7(6)14)12-2-1-5(11-16)10-9(12)15/h1-2,4,6-8,13-14,16H,3H2,(H,10,11,15)(H2,17,18,19)/t4-,6-,7-,8-/m1/s1
InChIKey descriptor DYOUVDKCXLKHKY-XVFCMESISA-N

Status Information

Last modified 2021-08-11
Created 2012-10-18
Release status REL
Model PDB code 4HIB
Processing site RCSB