PDB Chemical Component 16B
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 16B
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OAC |
N4 |
1.381 |
1.416 |
| N4 |
C4 |
1.304 |
1.376 |
| C4 |
C5 |
1.391 |
1.409 |
| C4 |
N3 |
1.360 |
1.327 |
| C5 |
C6 |
1.381 |
1.355 |
| N3 |
C2 |
1.355 |
1.331 |
| C6 |
N1 |
1.403 |
1.362 |
| C2 |
N1 |
1.393 |
1.346 |
| C2 |
O2 |
1.217 |
1.220 |
| N1 |
C1' |
1.509 |
1.465 |
| O2' |
C2' |
1.480 |
1.429 |
| C2' |
C1' |
1.556 |
1.553 |
| C2' |
C3' |
1.530 |
1.548 |
| C1' |
O4' |
1.532 |
1.444 |
| O4' |
C4' |
1.510 |
1.437 |
| OP1 |
P |
1.612 |
1.480 |
| C3' |
C4' |
1.592 |
1.541 |
| C3' |
O3' |
1.465 |
1.429 |
| C5' |
C4' |
1.633 |
1.530 |
| C5' |
O5' |
1.480 |
1.430 |
| O5' |
P |
1.638 |
1.609 |
| P |
OP3 |
1.612 |
1.610 |
| P |
OP2 |
1.474 |
1.610 |
| OP3 |
HOP3 |
0.950 |
0.967 |
| OP2 |
HOP2 |
0.950 |
0.967 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'' |
1.100 |
1.089 |
| C4' |
H4' |
1.099 |
1.089 |
| C3' |
H3' |
1.100 |
1.091 |
| O3' |
HO3' |
0.950 |
0.968 |
| C2' |
H2' |
1.100 |
1.090 |
| O2' |
HO2' |
0.950 |
0.967 |
| C1' |
H1' |
1.100 |
1.090 |
| C6 |
H6 |
1.080 |
1.080 |
| C5 |
H5 |
1.080 |
1.080 |
| N4 |
H41 |
1.000 |
0.970 |
| OAC |
H14 |
0.950 |
0.967 |
Bond Angles for 16B
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OAC |
N4 |
H41 |
125.1 |
120.0 |
| C4 |
C5 |
H5 |
120.7 |
120.6 |
| C5 |
C6 |
H6 |
120.1 |
120.4 |
| N1 |
C1' |
H1' |
110.2 |
110.7 |
| O2' |
C2' |
C1' |
116.7 |
110.9 |
| O2' |
C2' |
H2' |
110.0 |
110.8 |
| C1' |
C2' |
H2' |
109.0 |
110.9 |
| C2' |
C1' |
H1' |
109.6 |
110.6 |
| C2' |
C3' |
H3' |
108.8 |
110.6 |
| O4' |
C4' |
H4' |
109.5 |
109.9 |
| OP1 |
P |
OP3 |
105.5 |
109.4 |
| OP1 |
P |
OP2 |
111.5 |
109.4 |
| C3' |
C4' |
H4' |
108.4 |
109.9 |
| O3' |
C3' |
H3' |
109.7 |
110.5 |
| C3' |
O3' |
HO3' |
109.5 |
114.0 |
| C4' |
C5' |
H5' |
108.9 |
109.5 |
| C4' |
C5' |
H5'' |
108.9 |
109.5 |
| C5' |
C4' |
H4' |
108.0 |
109.9 |
| OP3 |
P |
OP2 |
115.9 |
109.5 |
| P |
OP3 |
HOP3 |
109.5 |
114.0 |
| P |
OP2 |
HOP2 |
109.5 |
114.1 |
| H5' |
C5' |
H5'' |
109.5 |
109.5 |
Torsion Angles for 16B
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N4 |
C4 |
C5 |
H5 |
358.1 |
0.1 |
| C4 |
C5 |
C6 |
H6 |
180.5 |
180.0 |
| C6 |
N1 |
C1' |
H1' |
226.9 |
351.8 |
| C2 |
N1 |
C1' |
H1' |
51.4 |
172.0 |
| N1 |
C1' |
C2' |
H2' |
46.0 |
37.4 |
| C2' |
C1' |
N1 |
H1' |
123.4 |
122.9 |
| C1' |
C2' |
O2' |
H2' |
124.7 |
123.7 |
| O2' |
C2' |
C1' |
H1' |
44.5 |
36.8 |
| O2' |
C2' |
C3' |
H3' |
82.4 |
102.2 |
| N1 |
C1' |
C2' |
H1' |
236.2 |
237.0 |
| O2' |
C2' |
C1' |
H2' |
234.7 |
236.4 |
| C1' |
C2' |
C3' |
H3' |
206.6 |
220.5 |
| C2' |
C3' |
C4' |
H4' |
136.9 |
117.6 |
| O3' |
C3' |
C2' |
H3' |
240.4 |
237.3 |
| C2' |
C3' |
O3' |
HO3' |
180.0 |
65.3 |
| C1' |
O4' |
C4' |
H4' |
250.5 |
266.9 |
| C3' |
C4' |
O4' |
H4' |
116.1 |
119.5 |
| O4' |
C4' |
C5' |
H5' |
296.9 |
306.8 |
| O4' |
C4' |
C5' |
H5'' |
56.3 |
186.7 |
| C5' |
C4' |
O4' |
H4' |
244.7 |
239.0 |
| OP3 |
P |
OP1 |
OP2 |
126.6 |
240.1 |
| OP1 |
P |
OP3 |
HOP3 |
0.0 |
179.9 |
| OP1 |
P |
OP2 |
HOP2 |
0.0 |
300.1 |
| O4' |
C4' |
C3' |
H4' |
243.2 |
240.5 |
| C3' |
C4' |
C5' |
H5' |
54.6 |
64.7 |
| C3' |
C4' |
C5' |
H5'' |
173.9 |
304.6 |
| C5' |
C4' |
C3' |
H4' |
125.7 |
121.0 |
| C2' |
C3' |
O3' |
H3' |
119.1 |
122.7 |
| O3' |
C3' |
C4' |
H4' |
16.5 |
358.9 |
| O4' |
C4' |
C5' |
H4' |
116.4 |
121.0 |
| C3' |
C4' |
C5' |
H4' |
234.0 |
239.0 |
| H5' |
C5' |
C4' |
H5'' |
240.7 |
120.1 |
| O5' |
P |
OP3 |
HOP3 |
242.6 |
300.0 |
| O5' |
P |
OP2 |
HOP2 |
123.6 |
180.0 |
| OP1 |
P |
OP3 |
OP2 |
236.1 |
119.9 |
| OP3 |
P |
OP2 |
HOP2 |
239.3 |
60.0 |
| OP1 |
P |
OP2 |
OP3 |
120.7 |
240.1 |
| OP2 |
P |
OP3 |
HOP3 |
123.9 |
60.0 |
| HOP3 |
OP3 |
P |
OP2 |
123.9 |
60.0 |
| C4' |
C5' |
H5' |
H5'' |
119.0 |
239.9 |
| H5' |
C5' |
C4' |
H4' |
180.5 |
185.7 |
| C4' |
C5' |
H5'' |
H5' |
241.0 |
120.0 |
| H5'' |
C5' |
C4' |
H4' |
299.9 |
65.6 |
| H4' |
C4' |
C5' |
H5' |
180.5 |
185.7 |
| H4' |
C4' |
C5' |
H5'' |
299.9 |
65.6 |
| H3' |
C3' |
C4' |
H4' |
252.8 |
236.4 |
| H3' |
C3' |
O3' |
HO3' |
60.9 |
302.6 |
| HO3' |
O3' |
C3' |
H3' |
60.9 |
302.6 |
| O2' |
C2' |
H2' |
C1' |
129.1 |
123.7 |
| H2' |
C2' |
C1' |
H1' |
169.8 |
160.4 |
| H2' |
C2' |
C3' |
H3' |
321.6 |
338.7 |
| HO2' |
O2' |
C2' |
C1' |
180.0 |
180.0 |
| HO2' |
O2' |
C2' |
H2' |
55.3 |
56.4 |
| H1' |
C1' |
C2' |
H2' |
169.8 |
160.4 |
| H5 |
C5 |
C6 |
H6 |
0.5 |
0.0 |
| H14 |
OAC |
N4 |
H41 |
360.0 |
0.0 |