Atom Nomenclature for 15S

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 15S

Atom Name (V3) Atom Name (V2)
OAC OAC
CAX CAX
NAU NAU
CAS CAS
CBG CBG
CBE CBE
CBD CBD
CAI CAI
CAG CAG
CAH CAH
CBC CBC
CAP CAP
CAR CAR
NBI NBI
CAT CAT
CAW CAW
OAB OAB
N N
CA CA
CB CB
C C
O O
NBH NBH
CAQ CAQ
CAO CAO
CAN CAN
CAF CAF
CAY CAY
CBB CBB
CAL CAL
CAJ CAJ
CBA CBA
FAE FAE
CAK CAK
CAM CAM
H3 H3
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H27 H27
H28 H28
H29 H29
H30 H30
H32 H32
H33 H33
H34 H34
H35 H35