Atom Nomenclature for 15P

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 15P

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
O1 O1
C3 C3
C4 C4
O2 O2
C5 C5
C6 C6
O3 O3
C7 C7
C8 C8
O4 O4
C9 C9
C10 C10
O5 O5
C11 C11
C12 C12
O6 O6
C13 C13
C14 C14
O7 O7
C15 C15
C16 C16
O8 O8
C17 C17
C18 C18
O9 O9
C19 C19
C20 C20
O10 O10
C21 C21
C22 C22
O11 O11
C23 C23
C24 C24
O12 O12
C25 C25
C26 C26
O13 O13
C27 C27
C28 C28
O14 O14
C29 C29
C30 C30
O15 O15
C31 C31
C32 C32
O16 O16
C33 C33
C34 C34
O17 O17
C35 C35
C36 C36
O18 O18
C37 C37
C38 C38
O19 O19
C39 C39
C40 C40
O20 O20
C41 C41
C42 C42
O21 O21
C43 C43
C44 C44
O22 O22
C45 C45
C46 C46
O23 O23
C47 C47
C48 C48
O24 O24
C49 C49
C50 C50
O25 O25
C51 C51
C52 C52
O26 O26
C53 C53
C54 C54
O27 O27
C55 C55
C56 C56
O28 O28
C57 C57
C58 C58
O29 O29
C59 C59
C60 C60
O30 O30
C61 C61
C62 C62
O31 O31
C63 C63
C64 C64
O32 O32
C65 C65
C66 C66
O33 O33
C67 C67
C68 C68
O34 O34
H11 H11
H21 H21
H12 H12
H22 H22
H13 H13
H23 H23
H14 H14
H24 H24
H15 H15
H25 H25
H16 H16
H26 H26
H17 H17
H27 H27
H18 H18
H28 H28
H19 H19
H29 H29
H101 1H10
H102 2H10
H111 1H11
H112 2H11
H121 1H12
H122 2H12
H131 1H13
H132 2H13
H141 1H14
H142 2H14
H151 1H15
H152 2H15
H161 1H16
H162 2H16
H171 1H17
H172 2H17
H181 1H18
H182 2H18
H191 1H19
H192 2H19
H201 1H20
H202 2H20
H211 1H21
H212 2H21
H221 1H22
H222 2H22
H231 1H23
H232 2H23
H241 1H24
H242 2H24
H251 1H25
H252 2H25
H261 1H26
H262 2H26
H271 1H27
H272 2H27
H281 1H28
H282 2H28
H291 1H29
H292 2H29
H301 1H30
H302 2H30
H311 1H31
H312 2H31
H321 1H32
H322 2H32
H331 1H33
H332 2H33
H341 1H34
H342 2H34
H351 1H35
H352 2H35
H361 1H36
H362 2H36
H371 1H37
H372 2H37
H381 1H38
H382 2H38
H391 1H39
H392 2H39
H401 1H40
H402 2H40
H411 1H41
H412 2H41
H421 1H42
H422 2H42
H431 1H43
H432 2H43
H441 1H44
H442 2H44
H451 1H45
H452 2H45
H461 1H46
H462 2H46
H471 1H47
H472 2H47
H481 1H48
H482 2H48
H491 1H49
H492 2H49
H501 1H50
H502 2H50
H511 1H51
H512 2H51
H521 1H52
H522 2H52
H531 1H53
H532 2H53
H541 1H54
H542 2H54
H551 1H55
H552 2H55
H561 1H56
H562 2H56
H571 1H57
H572 2H57
H581 1H58
H582 2H58
H591 1H59
H592 2H59
H601 1H60
H602 2H60
H611 1H61
H612 2H61
H621 1H62
H622 2H62
H631 1H63
H632 2H63
H641 1H64
H642 2H64
H651 1H65
H652 2H65
H661 1H66
H662 2H66
H671 1H67
H672 2H67
H681 1H68
H682 2H68