Atom Nomenclature for 158

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 158

Atom Name (V3) Atom Name (V2)
O13 O13
C5 C5
C6 C6
S7 S7
N4 N4
C3 C3
C2 C2
O8 O8
C1 C1
C9 C9
C10 C10
O11 O11
O12 O12
H61 1H6
H62 2H6
H7 H7
H4 H4
H3 H3
H11 1H1
H12A 2H1
H13 3H1
H91 1H9
H92 2H9
H12 H12