Atom Nomenclature for 152

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 152

Atom Name (V3) Atom Name (V2)
C1 C1
O1A O1A
O1B O1B
C2 C2
C3 C3
O3 O3
C4 C4
N5 N5
C5A C5A
C5B C5B
C5C C5C
H1B H1B
H21 1H2
H22 2H2
H3 H3
HO3 HO3
H41 1H4
H42 2H4
H5A1 1H5A
H5A2 2H5A
H5A3 3H5A
H5B1 1H5B
H5B2 2H5B
H5B3 3H5B
H5C1 1H5C
H5C2 2H5C
H5C3 3H5C