Atom Nomenclature for 14F

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 14F

Atom Name (V3) Atom Name (V2)
CAA CAA
CAB CAB
NAC NAC
OAD OAD
OAE OAE
CAF CAF
CAG CAG
OAH OAH
OAI OAI
CAJ CAJ
CAK CAK
CAL CAL
CAM CAM
CAN CAN
HAA HAA
HAAA HAAA
HAAB HAAB
HAB HAB
HABA HABA
HABB HABB
HNAC HNAC
HNAA HNAA
HOAD HOAD
HAF HAF
HAG HAG