PDB Chemical Component 13L

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 13L

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C27 C29 1.527 1.529
C29 C26 1.510 1.530
C29 C13 1.511 1.507
C4 C13 1.380 1.383
C4 C6 1.384 1.381
C13 C5 1.382 1.383
C6 C14 1.380 1.389
C5 C7 1.384 1.381
C14 C7 1.380 1.390
C14 N36 1.428 1.398
N36 C18 1.371 1.348
C3 C1 1.384 1.380
C3 C12 1.393 1.397
C18 C12 1.481 1.477
C18 O37 1.223 1.217
C1 C2 1.385 1.382
C12 C8 1.389 1.393
C2 C11 1.396 1.394
C8 C11 1.386 1.392
C11 C15 1.466 1.483
C25 C28 1.512 1.530
C15 N32 1.345 1.312
C15 C10 1.428 1.463
N32 N33 1.354 1.398
C22 N34 1.457 1.469
C22 C20 1.527 1.532
C23 N34 1.447 1.469
C23 C24 1.530 1.532
N34 C19 1.386 1.348
N35 C17 1.395 1.381
C28 C19 1.504 1.506
C10 C17 1.400 1.404
C10 C16 1.385 1.408
C19 O38 1.234 1.214
N33 C24 1.463 1.465
N33 C16 1.368 1.363
C20 C21 1.534 1.530
C21 C24 1.527 1.530
C17 N31 1.344 1.329
C16 N30 1.337 1.333
N31 C9 1.345 1.321
N30 C9 1.347 1.315
C4 H1 1.080 1.080
C7 H2 1.080 1.080
C6 H3 1.080 1.080
C9 H4 1.080 1.080
C20 H5 1.100 1.090
C20 H6 1.100 1.091
C21 H7 1.100 1.090
C21 H8 1.100 1.090
C8 H9 1.079 1.080
C26 H10 1.100 1.090
C26 H11 1.100 1.090
C26 H12 1.100 1.090
C1 H13 1.080 1.080
C2 H14 1.080 1.081
C3 H15 1.080 1.080
C5 H16 1.080 1.081
C22 H17 1.100 1.089
C22 H18 1.100 1.090
C23 H19 1.100 1.090
C23 H20 1.100 1.090
C24 H21 1.100 1.090
C25 H22 1.100 1.090
C25 H23 1.100 1.090
C25 H24 1.100 1.090
C27 H25 1.100 1.091
C27 H26 1.100 1.090
C27 H27 1.100 1.090
C28 H28 1.100 1.090
C28 H29 1.099 1.090
C29 H30 1.100 1.090
N35 H31 1.000 0.970
N35 H32 1.000 0.970
N36 H33 1.000 0.969

Bond Angles for 13L

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C29 C27 H25 109.5 109.5
C29 C27 H26 109.4 109.5
C29 C27 H27 109.5 109.5
C27 C29 H30 105.9 109.5
C29 C26 H10 109.5 109.5
C29 C26 H11 109.5 109.5
C29 C26 H12 109.5 109.4
C6 C4 C13 121.3 120.1
C4 C13 C5 119.0 120.1
C13 C4 H1 119.4 119.9
C4 C6 C14 119.5 119.9
C6 C4 H1 119.4 120.0
C4 C6 H3 120.3 120.0
C13 C5 H16 120.0 120.0
C6 C14 N36 118.5 120.1
C14 C6 H3 120.3 120.0
C5 C7 H2 119.6 120.1
C14 C7 H2 119.7 120.0
C14 N36 H33 116.9 120.0
N36 C18 O37 122.5 120.0
C3 C1 H13 119.9 119.9
C18 C12 C3 120.4 120.1
C12 C3 H15 120.4 119.9
C12 C18 O37 121.3 120.0
C1 C2 C11 121.4 120.2
C2 C1 H13 120.0 119.9
C1 C2 H14 119.3 119.9
C12 C8 H9 119.5 120.2
C8 C11 C2 117.9 119.9
C2 C11 C15 122.0 120.1
C11 C2 H14 119.3 119.9
C8 C11 C15 119.8 120.1
C11 C8 H9 119.5 120.1
C11 C15 N32 118.3 126.3
C28 C25 H22 109.5 109.5
C28 C25 H23 109.5 109.5
C28 C25 H24 109.5 109.4
C25 C28 H28 109.1 109.4
C25 C28 H29 109.1 109.5
C15 N32 N33 105.3 109.9
C15 C10 C17 138.1 135.0
C22 N34 C23 113.6 118.8
N34 C22 H17 109.4 109.6
N34 C22 H18 109.4 109.6
C22 C20 H5 109.3 109.5
C22 C20 H6 109.3 109.5
C24 C23 N34 109.5 108.8
N34 C23 H19 109.5 109.6
N34 C23 H20 109.5 109.5
C21 C24 C23 112.9 109.3
C24 C23 H19 109.5 109.6
C24 C23 H20 109.5 109.6
C23 C24 H21 108.0 109.5
N34 C19 O38 125.5 120.0
C28 C19 O38 119.1 120.0
C10 C17 N31 119.2 118.3
C10 C16 N30 126.8 118.6
N33 C24 H21 108.8 109.5
C20 C21 C24 111.8 109.6
C21 C20 H5 109.3 109.5
C21 C20 H6 109.3 109.5
C20 C21 H7 108.9 109.4
C20 C21 H8 108.9 109.5
C24 C21 H7 108.9 109.5
C24 C21 H8 108.9 109.4
C21 C24 H21 108.0 109.5
N31 C9 H4 116.2 118.7
N30 C9 H4 116.3 118.6
H5 C20 H6 109.5 109.5
H7 C21 H8 109.5 109.4
H10 C26 H11 109.5 109.5
H10 C26 H12 109.5 109.5
H11 C26 H12 109.5 109.5
H17 C22 H18 109.5 109.7
H19 C23 H20 109.4 109.7
H22 C25 H23 109.5 109.5
H22 C25 H24 109.4 109.4
H23 C25 H24 109.4 109.5
H25 C27 H26 109.5 109.5
H25 C27 H27 109.4 109.5
H26 C27 H27 109.5 109.5
H28 C28 H29 109.5 109.4
H31 N35 H32 109.4 120.0

Torsion Angles for 13L

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C27 C29 C26 H10 180.0 60.0
C27 C29 C26 H11 300.0 180.0
C27 C29 C26 H12 60.0 300.0
H25 C27 C29 H26 240.0 240.0
H25 C27 C29 H27 120.0 120.0
H26 C27 C29 H27 240.0 240.0
H10 C26 C29 H11 240.0 240.0
H10 C26 C29 H12 120.0 120.0
H11 C26 C29 H12 240.0 240.0
C29 C13 C4 H1 0.5 0.3
C29 C13 C5 H16 0.0 0.1
C13 C4 C6 C14 359.2 360.0
C6 C4 C13 H1 180.0 179.7
C13 C4 C6 H3 179.2 180.0
C4 C13 C5 H16 179.8 180.0
C6 C4 C13 C5 0.7 360.0
C13 C4 C6 H1 180.0 180.3
C4 C6 C14 N36 179.3 180.0
C14 C6 C4 H3 180.0 180.0
C5 C13 C4 H1 180.7 180.3
C13 C5 C7 H2 179.8 180.0
C14 C6 C4 C13 359.2 360.0
C14 C6 C4 H1 179.2 179.7
C4 C6 C14 H3 180.0 180.0
C6 C14 C7 H2 180.1 180.0
C6 C14 N36 H33 311.0 35.4
C4 C13 C5 C7 359.8 360.0
C14 C7 C5 H2 180.0 180.1
C4 C6 C14 C7 0.4 0.1
C5 C7 C14 H2 180.0 179.9
N36 C14 C6 H3 359.3 360.0
N36 C14 C7 H2 1.2 0.0
C14 N36 C18 O37 3.4 354.6
C6 C14 N36 C18 131.0 215.5
C12 C18 N36 O37 181.0 180.0
C18 C12 C3 C1 179.7 179.5
C3 C1 C2 C11 2.3 359.5
C2 C1 C3 H13 180.0 180.4
C3 C1 C2 H14 182.3 180.0
C12 C3 C1 H13 177.8 180.3
C3 C12 C18 O37 152.8 180.0
C3 C12 C8 H9 178.5 180.3
N36 C18 C12 O37 179.0 180.0
C18 C12 C3 H15 359.7 0.3
C18 C12 C8 H9 0.6 0.3
O37 C18 C12 C3 152.8 180.0
C3 C1 C2 H13 180.0 179.6
C8 C11 C2 C1 358.1 360.0
C1 C2 C11 C15 184.0 180.0
C11 C2 C1 H14 180.0 179.5
C12 C8 C11 C15 175.7 180.2
C11 C8 C12 H9 180.0 179.7
C11 C2 C1 H13 182.3 180.0
C1 C2 C11 H14 180.0 180.5
C8 C11 C2 C15 174.1 179.9
C2 C11 C8 H9 181.5 180.0
C2 C11 C15 N32 136.8 47.5
C1 C2 C11 C8 358.1 360.0
C12 C8 C11 H9 180.0 180.3
C2 C11 C8 C15 185.8 180.1
C8 C11 C2 H14 178.1 179.5
C8 C11 C15 N32 322.9 227.5
C8 C11 C15 C2 186.1 180.1
C15 C11 C2 H14 4.0 359.6
C15 C11 C8 H9 355.7 359.9
C11 C15 N32 N33 183.9 180.5
C11 C15 C10 C17 355.1 359.9
C25 C28 C19 O38 95.3 0.0
H22 C25 C28 H23 240.0 240.0
H22 C25 C28 H24 120.0 120.0
H23 C25 C28 H24 240.0 240.0
H28 C28 C25 H29 240.5 119.9
N32 C15 C10 C17 179.1 179.9
C2 C11 C15 C10 321.1 227.5
C8 C11 C15 C10 147.1 47.5
C15 C10 C17 N31 177.4 180.0
C15 C10 C16 N30 180.4 179.9
N32 N33 C24 H21 163.9 180.0
N34 C22 C20 H5 64.2 185.4
N34 C22 C20 H6 183.9 65.4
C24 C23 N34 C22 300.4 306.4
C22 N34 C23 H19 60.4 186.6
C22 N34 C23 H20 180.3 66.2
C22 N34 C19 O38 157.0 180.0
H17 C22 N34 H18 240.1 120.4
C22 C20 C21 C24 50.2 61.4
C21 C20 C22 H5 239.9 120.0
C21 C20 C22 H6 120.1 240.0
C22 C20 C21 H7 170.6 181.4
C22 C20 C21 H8 289.9 301.3
H5 C20 C22 H6 240.3 120.0
C23 N34 C22 H17 182.8 293.8
C23 N34 C22 H18 302.6 173.4
C21 C24 C23 N34 51.9 54.6
C24 C23 N34 H19 240.0 119.8
C24 C23 N34 H20 120.0 240.3
N34 C23 C24 H21 292.5 294.7
C23 N34 C19 O38 353.5 0.0
H19 C23 N34 H20 240.0 120.4
C22 N34 C23 C24 300.4 306.4
N34 C23 C24 H19 120.0 240.2
N34 C23 C24 H20 240.0 119.7
N33 C24 C23 H21 243.4 239.9
C20 C21 C24 C23 311.2 298.6
C23 C24 C21 H7 190.9 178.6
C23 C24 C21 H8 71.5 58.7
C21 C24 C23 H21 119.4 119.9
H19 C23 C24 H20 119.9 239.6
C28 C19 N34 O38 180.3 180.0
N34 C19 C28 O38 179.7 180.0
C17 C10 C16 N30 359.1 359.8
C15 N32 N33 C24 173.4 180.0
N33 C24 C23 N34 175.9 174.6
N33 C24 C23 H19 55.9 294.4
N33 C24 C23 H20 296.0 54.8
C23 C24 N33 H21 116.1 120.1
N33 C24 C21 H7 70.5 58.7
N33 C24 C21 H8 311.2 298.7
C21 C24 N33 H21 240.1 240.0
C22 C20 C21 H5 120.1 240.1
C22 C20 C21 H6 239.9 120.0
C24 C21 C20 H7 239.7 240.0
C24 C21 C20 H8 120.3 120.0
C20 C21 C24 H21 70.5 58.6
H5 C20 C21 H6 119.7 239.9
H7 C21 C20 H8 240.6 240.1
C21 C24 C23 H19 291.9 174.4
C21 C24 C23 H20 171.9 294.8
C23 C24 C21 H21 240.6 240.1
N33 C24 C21 H21 120.3 120.1
C24 C21 C20 H5 290.1 181.3
C24 C21 C20 H6 170.4 301.4
C20 C21 C24 H7 120.3 120.0
C20 C21 C24 H8 239.7 239.9
H7 C21 C24 H8 119.3 119.9
C17 N31 C9 H4 182.7 180.0
C16 N30 C9 H4 176.1 180.0
N30 C9 N31 H4 180.0 179.7
N31 C9 N30 H4 180.0 180.3
C6 C4 H1 C13 180.0 180.3
H1 C4 C13 C5 180.7 180.3
H1 C4 C6 C14 179.2 179.7
H1 C4 C6 H3 359.2 359.7
H3 C6 C4 C13 179.2 180.0
C4 C6 H3 C14 180.0 180.0
H3 C6 C4 H1 359.2 359.7
H3 C6 C14 N36 359.3 360.0
C22 C20 H5 H6 119.6 239.9
H5 C20 C21 C24 290.1 181.3
C21 C20 H5 H6 240.4 120.1
H5 C20 C21 H7 50.4 301.3
H5 C20 C21 H8 169.8 61.3
C22 C20 H6 H5 240.4 120.0
H6 C20 C21 C24 170.4 301.4
C21 C20 H6 H5 119.6 239.9
H6 C20 C21 H7 290.7 61.4
H6 C20 C21 H8 50.1 181.4
H7 C21 C24 C23 190.9 178.6
C20 C21 H7 C24 237.9 239.9
H7 C21 C20 H5 50.4 301.3
H7 C21 C20 H6 290.7 61.4
C20 C21 H7 H8 119.0 120.0
C24 C21 H7 H8 241.1 240.1
H7 C21 C24 H21 310.2 298.6
H8 C21 C24 C23 71.5 58.7
C20 C21 H8 C24 122.1 120.1
H8 C21 C20 H5 169.8 61.3
H8 C21 C20 H6 50.1 181.4
C20 C21 H8 H7 241.0 240.1
C24 C21 H8 H7 118.9 119.9
H8 C21 C24 H21 190.9 178.6
H9 C8 C11 C2 181.5 180.0
H9 C8 C11 C15 355.7 359.9
C29 C26 H10 H11 120.0 120.0
C29 C26 H10 H12 240.0 240.0
H11 C26 H10 H12 120.0 120.0
C29 C26 H11 H10 239.9 240.0
C29 C26 H11 H12 120.0 120.0
H10 C26 H11 H12 240.0 240.0
C29 C26 H12 H10 120.0 120.0
C29 C26 H12 H11 240.0 240.0
H10 C26 H12 H11 120.0 120.0
H13 C1 C2 C11 182.3 180.0
H13 C1 C2 H14 2.3 0.4
C1 C2 H14 C11 180.0 179.5
H14 C2 C1 H13 2.3 0.4
H14 C2 C11 C15 4.0 359.6
H15 C3 C1 H13 357.8 359.5
H16 C5 C7 H2 359.8 360.0
H17 C22 N34 C23 182.8 293.8
N34 C22 H17 H18 119.8 239.7
H17 C22 C20 H5 304.1 305.2
H17 C22 C20 H6 63.8 185.1
H18 C22 N34 C23 302.6 173.4
N34 C22 H18 H17 240.2 120.3
H18 C22 C20 H5 184.2 65.7
H18 C22 C20 H6 303.9 305.6
C24 C23 H19 N34 120.0 240.7
N34 C23 H19 H20 120.0 239.7
C24 C23 H19 H20 240.0 120.3
H19 C23 C24 H21 172.5 54.5
C24 C23 H20 N34 240.0 119.3
N34 C23 H20 H19 240.0 120.4
C24 C23 H20 H19 120.0 239.6
H20 C23 C24 H21 52.6 174.9
H21 C24 C23 N34 292.5 294.7
C21 C24 H21 C23 237.6 240.2
H21 C24 C23 H19 172.5 54.5
H21 C24 C23 H20 52.6 174.9
H21 C24 C21 H7 310.2 298.6
H21 C24 C21 H8 190.9 178.6
C28 C25 H22 H23 120.0 120.0
C28 C25 H22 H24 240.0 240.0
H22 C25 C28 H28 300.2 180.0
H22 C25 C28 H29 59.7 60.0
H23 C25 H22 H24 120.0 120.0
C28 C25 H23 H22 240.0 240.0
C28 C25 H23 H24 120.0 120.0
H23 C25 C28 H28 60.3 300.0
H23 C25 C28 H29 179.8 180.1
H22 C25 H23 H24 240.0 240.0
C28 C25 H24 H22 120.0 120.0
C28 C25 H24 H23 240.0 240.0
H24 C25 C28 H28 180.2 60.0
H24 C25 C28 H29 299.7 300.1
H22 C25 H24 H23 120.0 120.1
C29 C27 H25 H26 120.0 120.0
C29 C27 H25 H27 240.0 240.0
H25 C27 C29 H30 65.1 300.0
H26 C27 H25 H27 120.0 120.0
C29 C27 H26 H25 240.0 240.0
C29 C27 H26 H27 120.0 120.0
H26 C27 C29 H30 185.1 60.0
H25 C27 H26 H27 240.0 240.0
C29 C27 H27 H25 120.0 120.0
C29 C27 H27 H26 240.0 240.0
H27 C27 C29 H30 305.1 180.0
H25 C27 H27 H26 120.0 120.0
H28 C28 C25 H22 300.2 180.0
H28 C28 C25 H23 60.3 300.0
H28 C28 C25 H24 180.2 60.0
C25 C28 H28 H29 119.3 240.0
H28 C28 C19 O38 335.1 120.0
H29 C28 C25 H22 59.7 60.0
H29 C28 C25 H23 179.8 180.1
H29 C28 C25 H24 299.7 300.1
C25 C28 H29 H28 240.7 119.9
H29 C28 C19 O38 215.6 240.0
H30 C29 C27 H25 65.1 300.0
H30 C29 C27 H26 185.1 60.0
H30 C29 C27 H27 305.1 180.0
H30 C29 C26 H10 294.8 300.0
H30 C29 C26 H11 54.8 60.0
H30 C29 C26 H12 174.8 180.0
H33 N36 C18 O37 183.4 174.6