PDB Chemical Component 13J

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 13J

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C26 C29 1.514 1.531
C29 C27 1.500 1.530
C29 C13 1.496 1.506
C5 C13 1.387 1.383
C5 C7 1.387 1.381
C13 C4 1.378 1.382
C7 C14 1.383 1.389
C4 C6 1.376 1.380
C14 C6 1.384 1.389
C14 N36 1.412 1.398
N36 C18 1.372 1.348
C3 C1 1.384 1.380
C3 C12 1.388 1.397
C18 C12 1.468 1.478
C18 O37 1.223 1.216
C1 C2 1.384 1.382
C25 C28 1.528 1.530
C12 C8 1.389 1.393
C28 C19 1.492 1.507
C2 C11 1.386 1.394
C8 C11 1.393 1.392
C11 C15 1.454 1.482
C19 O38 1.232 1.213
C19 N34 1.386 1.348
N32 C15 1.335 1.312
N32 N33 1.342 1.400
C15 C10 1.428 1.463
C23 N34 1.465 1.471
C23 C24 1.534 1.532
N34 C22 1.440 1.469
N33 C24 1.454 1.465
N33 C16 1.365 1.362
C24 C21 1.528 1.530
C10 C16 1.383 1.407
C10 C17 1.390 1.404
N35 C17 1.393 1.381
C16 N30 1.344 1.333
C17 N31 1.349 1.330
C22 C20 1.514 1.532
C21 C20 1.520 1.530
N30 C9 1.336 1.315
N31 C9 1.344 1.321
C4 H1 1.081 1.080
C7 H2 1.080 1.081
C6 H3 1.080 1.081
C9 H4 1.080 1.081
C20 H5 1.100 1.090
C20 H6 1.100 1.090
C21 H7 1.100 1.089
C21 H8 1.100 1.091
C8 H9 1.080 1.080
C26 H10 1.100 1.090
C26 H11 1.100 1.090
C26 H12 1.100 1.090
C1 H13 1.080 1.079
C2 H14 1.080 1.081
C3 H15 1.080 1.079
C5 H16 1.080 1.080
C22 H17 1.100 1.090
C22 H18 1.100 1.089
C23 H19 1.100 1.089
C23 H20 1.100 1.091
C24 H21 1.100 1.091
C25 H22 1.100 1.090
C25 H23 1.100 1.090
C25 H24 1.100 1.090
C27 H25 1.100 1.090
C27 H26 1.100 1.090
C27 H27 1.100 1.090
C28 H28 1.100 1.090
C28 H29 1.100 1.091
C29 H30 1.100 1.090
N35 H31 1.000 0.970
N35 H32 1.000 0.970
N36 H33 1.000 0.970

Bond Angles for 13J

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C26 C29 C27 114.5 109.5
C29 C26 H10 109.5 109.5
C29 C26 H11 109.5 109.4
C29 C26 H12 109.4 109.4
C26 C29 H30 103.2 109.4
C29 C27 H25 109.5 109.4
C29 C27 H26 109.5 109.5
C29 C27 H27 109.5 109.4
C5 C7 C14 119.9 120.0
C5 C7 H2 120.0 120.0
C13 C4 H1 119.6 120.0
C7 C14 C6 120.9 119.8
C7 C14 N36 120.0 120.1
C14 C7 H2 120.1 120.0
C6 C4 H1 119.6 119.9
C4 C6 H3 120.6 120.1
C14 C6 H3 120.5 120.0
C14 N36 H33 118.2 120.0
N36 C18 O37 124.3 120.0
C3 C1 H13 119.9 119.9
C18 C12 C3 120.1 120.1
C12 C3 H15 120.7 120.0
C12 C18 O37 120.1 120.0
C1 C2 C11 121.8 120.2
C2 C1 H13 119.9 119.9
C1 C2 H14 119.1 119.9
C28 C25 H22 109.5 109.5
C28 C25 H23 109.5 109.5
C28 C25 H24 109.5 109.5
C25 C28 H28 110.9 109.5
C25 C28 H29 110.8 109.4
C12 C8 H9 119.7 120.1
C28 C19 O38 119.4 120.0
C28 C19 N34 115.7 120.0
C8 C11 C2 117.8 119.9
C2 C11 C15 121.4 120.1
C11 C2 H14 119.1 119.9
C8 C11 C15 120.8 120.0
C11 C8 H9 119.7 120.2
N34 C19 O38 124.8 120.0
C19 N34 C23 127.0 120.6
C19 N34 C22 116.4 120.7
C15 C10 C17 138.6 135.0
C24 C23 N34 110.5 108.8
N34 C23 H19 109.2 109.6
N34 C23 H20 109.2 109.5
C24 C23 H19 109.2 109.6
C24 C23 H20 109.2 109.6
C23 C24 H21 105.8 109.5
N34 C22 H17 109.7 109.6
N34 C22 H18 109.7 109.7
N33 C24 H21 106.8 109.5
C24 C21 H7 108.9 109.5
C24 C21 H8 109.0 109.4
C10 C16 N30 127.5 118.6
C10 C17 N31 118.9 118.3
C22 C20 H5 109.2 109.5
C22 C20 H6 109.2 109.5
C21 C20 H5 109.2 109.5
C21 C20 H6 109.2 109.4
N30 C9 H4 116.3 118.6
N31 C9 H4 116.3 118.6
H5 C20 H6 109.4 109.5
H7 C21 H8 109.5 109.4
H10 C26 H11 109.4 109.5
H10 C26 H12 109.5 109.5
H11 C26 H12 109.5 109.5
H17 C22 H18 109.4 109.6
H19 C23 H20 109.5 109.7
H22 C25 H23 109.5 109.5
H22 C25 H24 109.4 109.4
H23 C25 H24 109.5 109.4
H25 C27 H26 109.4 109.5
H25 C27 H27 109.5 109.5
H26 C27 H27 109.5 109.5
H28 C28 H29 109.5 109.5
H31 N35 H32 109.5 120.0

Torsion Angles for 13J

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C26 C29 C27 H25 180.0 180.0
C26 C29 C27 H26 300.0 300.0
C26 C29 C27 H27 60.0 60.0
H10 C26 C29 H11 240.0 239.9
H10 C26 C29 H12 120.0 120.0
H11 C26 C29 H12 240.0 240.0
C27 C29 C26 H10 180.0 60.0
C27 C29 C26 H11 300.0 180.0
C27 C29 C26 H12 60.0 300.0
C26 C29 C27 H30 111.5 240.0
H25 C27 C29 H26 240.0 240.0
H25 C27 C29 H27 120.0 120.0
H26 C27 C29 H27 240.0 240.0
C29 C13 C4 H1 356.7 0.2
C13 C5 C7 C14 0.6 359.8
C13 C5 C7 H2 180.6 180.2
C5 C13 C4 H1 179.8 180.3
C5 C7 C14 C6 0.4 0.4
C5 C7 C14 N36 178.3 179.9
C14 C7 C5 H2 180.0 179.6
C6 C4 C13 H1 180.0 179.7
C13 C4 C6 H3 181.2 180.2
C5 C7 C14 H2 180.0 180.4
C7 C14 C6 H3 178.7 179.6
C7 C14 N36 H33 305.7 327.0
C13 C4 C6 H1 180.0 180.3
C7 C14 C6 C4 358.7 359.5
C14 C6 C4 H3 180.0 180.0
C7 C14 C6 N36 177.9 179.5
C6 C14 C7 H2 180.4 180.0
C14 C6 C4 H1 181.2 180.0
C4 C6 C14 H3 180.0 180.0
C7 C14 N36 C6 182.1 180.5
N36 C14 C7 H2 358.3 359.6
N36 C14 C6 H3 0.8 0.0
C14 N36 C18 O37 3.1 354.8
C7 C14 N36 C18 125.6 147.0
C12 C18 N36 O37 181.2 180.0
C18 C12 C3 C1 178.7 179.4
C3 C1 C2 C11 2.6 359.5
C2 C1 C3 H13 180.0 180.5
C3 C1 C2 H14 182.7 180.0
C12 C3 C1 H13 177.2 180.3
C3 C12 C18 O37 153.8 180.0
C3 C12 C8 H9 180.1 180.2
N36 C18 C12 O37 178.8 180.0
C18 C12 C3 H15 358.7 0.2
C18 C12 C8 H9 2.8 0.3
O37 C18 C12 C3 153.8 180.0
C3 C1 C2 H13 180.0 179.5
C8 C11 C2 C1 359.0 0.1
C1 C2 C11 C15 182.2 180.0
C11 C2 C1 H14 180.0 179.5
C25 C28 C19 O38 59.2 360.0
C25 C28 C19 N34 242.1 179.9
H22 C25 C28 H23 240.0 239.9
H22 C25 C28 H24 120.0 120.0
H23 C25 C28 H24 240.0 240.1
H28 C28 C25 H29 238.2 120.0
C12 C8 C11 C15 176.5 180.2
C11 C8 C12 H9 180.0 179.8
N34 C19 C28 O38 183.0 180.0
C28 C19 N34 C23 341.9 180.0
C28 C19 N34 C22 177.6 0.0
C11 C2 C1 H13 182.7 180.0
C1 C2 C11 H14 180.0 180.5
C8 C11 C2 C15 176.8 180.0
C2 C11 C8 H9 179.7 180.0
C1 C2 C11 C8 359.0 0.1
C12 C8 C11 H9 180.0 180.2
C2 C11 C8 C15 183.2 180.0
C8 C11 C2 H14 178.9 179.5
C8 C11 C15 C2 183.3 180.0
C15 C11 C2 H14 2.2 359.5
C15 C11 C8 H9 356.4 0.0
C11 C15 C10 C17 357.7 0.4
C28 C19 O38 N34 183.2 180.0
O38 C19 N34 C23 165.1 359.9
O38 C19 N34 C22 0.8 180.0
C28 C19 N34 O38 176.9 180.0
C24 C23 N34 C19 251.5 233.6
C19 N34 C23 H19 11.6 113.8
C19 N34 C23 H20 131.3 353.4
C19 N34 C22 H17 224.1 6.6
C19 N34 C22 H18 344.4 246.2
N32 N33 C24 H21 17.2 180.1
C2 C11 C15 C10 321.4 44.6
C8 C11 C15 C10 144.7 224.6
C15 C10 C16 N30 182.1 180.0
C15 C10 C17 N31 178.6 179.9
C23 N34 C19 O38 165.1 359.9
C19 N34 C23 C22 195.5 180.0
C24 C23 N34 H19 239.9 119.8
C24 C23 N34 H20 120.2 240.2
N34 C23 C24 H21 67.8 65.3
C23 N34 C22 H17 57.9 186.6
C23 N34 C22 H18 178.2 66.2
H19 C23 N34 H20 240.3 120.4
C19 N34 C23 C24 251.5 233.6
N34 C23 C24 H19 120.2 240.2
N34 C23 C24 H20 239.8 119.8
N33 C24 C23 H21 115.6 120.0
C23 C24 C21 H7 168.5 301.3
C23 C24 C21 H8 287.8 181.4
H19 C23 C24 H20 119.7 239.6
C22 N34 C19 O38 0.8 180.0
C19 N34 C22 C23 166.2 180.0
N34 C22 C20 H5 179.5 294.7
N34 C22 C20 H6 299.1 174.6
H17 C22 N34 H18 239.8 120.4
N33 C24 C23 N34 183.4 185.3
N33 C24 C23 H19 63.2 305.2
N33 C24 C23 H20 303.6 65.6
C23 C24 N33 H21 245.0 240.0
N33 C24 C21 H7 296.3 61.3
N33 C24 C21 H8 55.7 301.4
C24 C21 C20 H5 186.0 58.6
C24 C21 C20 H6 66.3 178.6
H7 C21 C24 H8 240.6 119.9
C17 C10 C16 N30 0.7 359.7
C16 N30 C9 H4 181.5 180.0
C17 N31 C9 H4 179.5 180.1
C21 C20 C22 H5 239.8 120.0
C21 C20 C22 H6 120.2 240.1
H5 C20 C22 H6 240.3 120.1
C22 C20 C21 H5 120.2 240.0
C22 C20 C21 H6 239.8 119.9
H5 C20 C21 H6 119.7 240.0
N31 C9 N30 H4 180.0 180.3
N30 C9 N31 H4 180.0 179.7
H1 C4 C6 H3 1.2 359.9
C5 C7 H2 C14 180.0 179.6
H2 C7 C14 C6 180.4 180.0
H2 C7 C14 N36 358.3 359.6
H3 C6 C4 H1 1.2 359.9
C22 C20 H5 H6 119.5 239.9
C21 C20 H5 H6 240.5 120.0
C22 C20 H6 H5 240.5 120.1
C21 C20 H6 H5 119.5 240.0
C24 C21 H7 H8 119.0 240.1
H7 C21 C20 H5 65.6 178.6
H7 C21 C20 H6 306.0 298.7
C24 C21 H8 H7 241.0 119.9
H8 C21 C20 H5 306.3 298.6
H8 C21 C20 H6 186.6 58.7
H9 C8 C11 C2 179.7 180.0
H9 C8 C11 C15 356.4 0.0
H10 C26 C29 C27 180.0 60.0
C29 C26 H10 H11 120.0 120.0
C29 C26 H10 H12 240.0 240.0
H10 C26 C29 H30 291.6 300.0
H11 C26 H10 H12 120.0 120.1
H11 C26 C29 C27 300.0 180.0
C29 C26 H11 H10 240.0 240.0
C29 C26 H11 H12 120.0 119.9
H11 C26 C29 H30 51.6 60.0
H10 C26 H11 H12 240.0 240.0
H12 C26 C29 C27 60.0 300.0
C29 C26 H12 H10 120.0 120.0
C29 C26 H12 H11 240.0 240.1
H12 C26 C29 H30 171.6 180.0
H10 C26 H12 H11 120.0 120.1
H13 C1 C2 C11 182.7 180.0
H13 C1 C2 H14 2.7 0.5
C1 C2 H14 C11 180.0 179.5
H14 C2 C1 H13 2.7 0.5
H14 C2 C11 C15 2.2 359.5
H15 C3 C1 H13 357.2 359.5
H16 C5 C7 C14 180.6 179.7
H16 C5 C7 H2 0.6 0.1
N34 C22 H17 H18 120.4 239.5
H17 C22 C20 H5 59.6 54.5
H17 C22 C20 H6 179.2 294.4
N34 C22 H18 H17 239.6 120.4
H18 C22 C20 H5 299.3 174.8
H18 C22 C20 H6 59.0 54.7
C24 C23 H19 N34 121.0 240.7
N34 C23 H19 H20 119.5 239.7
C24 C23 H19 H20 240.4 120.4
H19 C23 C24 H21 307.7 185.1
C24 C23 H20 N34 239.0 119.3
N34 C23 H20 H19 240.5 120.3
C24 C23 H20 H19 119.5 239.6
H20 C23 C24 H21 188.0 305.6
H21 C24 C23 N34 67.8 65.3
H21 C24 C23 H19 307.7 185.1
H21 C24 C23 H20 188.0 305.6
H21 C24 C21 H7 53.3 181.4
H21 C24 C21 H8 172.7 61.5
C28 C25 H22 H23 120.0 120.0
C28 C25 H22 H24 240.0 240.0
H22 C25 C28 H28 299.1 179.9
H22 C25 C28 H29 60.9 59.9
H23 C25 H22 H24 120.0 120.0
C28 C25 H23 H22 240.0 239.9
C28 C25 H23 H24 120.0 120.0
H23 C25 C28 H28 59.1 300.0
H23 C25 C28 H29 180.9 180.0
H22 C25 H23 H24 240.0 240.0
C28 C25 H24 H22 120.0 120.0
C28 C25 H24 H23 240.0 240.0
H24 C25 C28 H28 179.2 60.0
H24 C25 C28 H29 300.9 300.0
H22 C25 H24 H23 120.0 120.0
C29 C27 H25 H26 120.0 120.0
C29 C27 H25 H27 240.0 240.0
H26 C27 H25 H27 120.0 120.0
C29 C27 H26 H25 240.0 240.1
C29 C27 H26 H27 120.0 120.0
H25 C27 H26 H27 240.0 239.9
C29 C27 H27 H25 120.0 119.9
C29 C27 H27 H26 240.0 240.0
H25 C27 H27 H26 120.0 120.1
H28 C28 C25 H22 299.1 179.9
H28 C28 C25 H23 59.1 300.0
H28 C28 C25 H24 179.2 60.0
C25 C28 H28 H29 122.6 240.0
H28 C28 C19 O38 300.1 120.0
H28 C28 C19 N34 123.0 300.0
H29 C28 C25 H22 60.9 59.9
H29 C28 C25 H23 180.9 180.0
H29 C28 C25 H24 300.9 300.0
C25 C28 H29 H28 237.4 120.0
H29 C28 C19 O38 178.3 240.1
H29 C28 C19 N34 1.2 60.0
C26 C29 H30 C27 240.4 120.0
H30 C29 C26 H10 291.6 300.0
H30 C29 C26 H11 51.6 60.0
H30 C29 C26 H12 171.6 180.0
H30 C29 C27 H25 68.5 300.0
H30 C29 C27 H26 188.5 60.0
H30 C29 C27 H27 308.5 180.0
H33 N36 C18 O37 183.1 174.8