Atom Nomenclature for 13I

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 13I

Atom Name (V3) Atom Name (V2)
C01 C01
C02 C02
C03 C03
C04 C04
C05 C05
C06 C06
C07 C07
O08 O08
N09 N09
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
O20 O20
C21 C21
O22 O22
O23 O23
C24 C24
C25 C25
CL CL
O27 O27
O28 O28
H02 H02
H28 H28
H27 H27
H191 H191
H192 H192
H09 H09
H101 H101
H102 H102
H111 H111
H112 H112
H12 H12
H13 H13
H141 H141
H142 H142
H151 H151
H152 H152
H161 H161
H162 H162
H17 H17
H21 H21
H22 H22
H241 H241
H242 H242
H251 H251
H252 H252
H253 H253