PDB Chemical Component 130
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 130
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.407 |
1.399 |
| C1 |
C6 |
1.405 |
1.389 |
| C1 |
C7 |
1.382 |
1.480 |
| C2 |
C3 |
1.395 |
1.366 |
| C2 |
HC2 |
1.080 |
1.079 |
| C3 |
C4 |
1.374 |
1.389 |
| C3 |
HC3 |
1.080 |
1.080 |
| C4 |
C5 |
1.351 |
1.408 |
| C4 |
N3 |
1.288 |
1.380 |
| C5 |
C6 |
1.394 |
1.396 |
| C5 |
N4 |
1.311 |
1.356 |
| C6 |
HC6 |
1.080 |
1.079 |
| C7 |
N1 |
1.303 |
1.378 |
| C7 |
N2 |
1.317 |
1.302 |
| N1 |
HH11 |
1.000 |
0.970 |
| N1 |
HH12 |
1.000 |
0.970 |
| N2 |
HH21 |
1.000 |
0.970 |
| N3 |
C8 |
1.303 |
1.370 |
| N3 |
HN3 |
1.000 |
0.970 |
| N4 |
C8 |
1.337 |
1.309 |
| C8 |
C1' |
1.398 |
1.477 |
| C1' |
C2' |
1.404 |
1.396 |
| C1' |
C6' |
1.417 |
1.399 |
| C2' |
C3' |
1.377 |
1.380 |
| C2' |
HC'2 |
1.080 |
1.080 |
| C3' |
C4' |
1.383 |
1.382 |
| C3' |
HC'3 |
1.080 |
1.080 |
| C4' |
C5' |
1.402 |
1.393 |
| C4' |
HC'4 |
1.080 |
1.080 |
| C5' |
C6' |
1.410 |
1.397 |
| C5' |
C1B |
1.409 |
1.482 |
| C6' |
O6' |
1.381 |
1.356 |
| O6' |
HO6 |
0.950 |
0.967 |
| C1B |
C2B |
1.395 |
1.394 |
| C1B |
C6B |
1.418 |
1.394 |
| C2B |
C3B |
1.393 |
1.380 |
| C2B |
H2' |
1.080 |
1.079 |
| C3B |
C4B |
1.397 |
1.382 |
| C3B |
H3' |
1.080 |
1.079 |
| C4B |
C5B |
1.390 |
1.383 |
| C4B |
H4' |
1.080 |
1.080 |
| C5B |
C6B |
1.394 |
1.380 |
| C5B |
H5' |
1.080 |
1.080 |
| C6B |
H6' |
1.080 |
1.080 |
Bond Angles for 130
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
119.5 |
120.3 |
| C2 |
C1 |
C7 |
119.4 |
119.9 |
| C1 |
C2 |
C3 |
120.7 |
120.4 |
| C1 |
C2 |
HC2 |
119.7 |
119.8 |
| C6 |
C1 |
C7 |
121.0 |
119.9 |
| C1 |
C6 |
C5 |
118.2 |
119.5 |
| C1 |
C6 |
HC6 |
120.9 |
120.3 |
| C1 |
C7 |
N1 |
118.9 |
120.0 |
| C1 |
C7 |
N2 |
119.5 |
120.0 |
| C3 |
C2 |
HC2 |
119.6 |
119.8 |
| C2 |
C3 |
C4 |
117.9 |
120.2 |
| C2 |
C3 |
HC3 |
121.1 |
119.9 |
| C4 |
C3 |
HC3 |
121.0 |
119.9 |
| C3 |
C4 |
C5 |
122.6 |
120.1 |
| C3 |
C4 |
N3 |
131.5 |
133.7 |
| C5 |
C4 |
N3 |
105.9 |
106.2 |
| C4 |
C5 |
C6 |
121.1 |
119.4 |
| C4 |
C5 |
N4 |
112.4 |
107.1 |
| C4 |
N3 |
C8 |
107.2 |
107.3 |
| C4 |
N3 |
HN3 |
126.4 |
126.4 |
| C6 |
C5 |
N4 |
126.5 |
133.4 |
| C5 |
C6 |
HC6 |
120.9 |
120.2 |
| C5 |
N4 |
C8 |
101.2 |
109.6 |
| N1 |
C7 |
N2 |
121.6 |
120.0 |
| C7 |
N1 |
HH11 |
110.1 |
120.0 |
| C7 |
N1 |
HH12 |
124.9 |
120.0 |
| C7 |
N2 |
HH21 |
110.1 |
120.0 |
| HH11 |
N1 |
HH12 |
124.9 |
120.0 |
| C8 |
N3 |
HN3 |
126.4 |
126.3 |
| N3 |
C8 |
N4 |
113.3 |
109.8 |
| N3 |
C8 |
C1' |
122.4 |
125.1 |
| N4 |
C8 |
C1' |
123.9 |
125.1 |
| C8 |
C1' |
C2' |
119.2 |
120.1 |
| C8 |
C1' |
C6' |
121.5 |
120.1 |
| C2' |
C1' |
C6' |
119.3 |
119.8 |
| C1' |
C2' |
C3' |
120.9 |
120.2 |
| C1' |
C2' |
HC'2 |
119.5 |
119.9 |
| C1' |
C6' |
C5' |
119.7 |
119.6 |
| C1' |
C6' |
O6' |
119.4 |
120.2 |
| C3' |
C2' |
HC'2 |
119.5 |
119.9 |
| C2' |
C3' |
C4' |
119.6 |
120.4 |
| C2' |
C3' |
HC'3 |
120.2 |
119.8 |
| C4' |
C3' |
HC'3 |
120.2 |
119.8 |
| C3' |
C4' |
C5' |
121.8 |
120.3 |
| C3' |
C4' |
HC'4 |
119.1 |
119.9 |
| C5' |
C4' |
HC'4 |
119.1 |
119.9 |
| C4' |
C5' |
C6' |
118.6 |
119.8 |
| C4' |
C5' |
C1B |
116.3 |
120.1 |
| C6' |
C5' |
C1B |
125.0 |
120.1 |
| C5' |
C6' |
O6' |
120.9 |
120.2 |
| C5' |
C1B |
C2B |
123.2 |
120.2 |
| C5' |
C1B |
C6B |
118.4 |
120.1 |
| C6' |
O6' |
HO6 |
109.5 |
106.8 |
| C2B |
C1B |
C6B |
118.5 |
119.7 |
| C1B |
C2B |
C3B |
120.3 |
119.9 |
| C1B |
C2B |
H2' |
119.9 |
120.0 |
| C1B |
C6B |
C5B |
120.9 |
119.9 |
| C1B |
C6B |
H6' |
119.5 |
120.0 |
| C3B |
C2B |
H2' |
119.8 |
120.1 |
| C2B |
C3B |
C4B |
120.8 |
120.1 |
| C2B |
C3B |
H3' |
119.6 |
119.9 |
| C4B |
C3B |
H3' |
119.6 |
120.0 |
| C3B |
C4B |
C5B |
119.7 |
120.3 |
| C3B |
C4B |
H4' |
120.2 |
119.8 |
| C5B |
C4B |
H4' |
120.2 |
119.9 |
| C4B |
C5B |
C6B |
119.8 |
120.1 |
| C4B |
C5B |
H5' |
120.1 |
120.0 |
| C6B |
C5B |
H5' |
120.1 |
119.9 |
| C5B |
C6B |
H6' |
119.6 |
120.1 |
Torsion Angles for 130
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
C7 |
180.2 |
180.3 |
| C2 |
C1 |
C6 |
C5 |
0.3 |
359.5 |
| C2 |
C1 |
C6 |
HC6 |
180.3 |
179.6 |
| C2 |
C1 |
C7 |
N1 |
160.9 |
0.0 |
| C2 |
C1 |
C7 |
N2 |
341.1 |
180.0 |
| C3 |
C2 |
C1 |
HC2 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
359.8 |
0.0 |
| C1 |
C2 |
C3 |
HC3 |
179.8 |
180.0 |
| C2 |
C1 |
C6 |
C7 |
179.8 |
179.7 |
| C6 |
C1 |
C2 |
C3 |
359.8 |
0.3 |
| C6 |
C1 |
C2 |
HC2 |
179.8 |
180.3 |
| C6 |
C1 |
C7 |
N1 |
340.7 |
179.7 |
| C6 |
C1 |
C7 |
N2 |
160.9 |
359.7 |
| C4 |
C5 |
C6 |
C1 |
359.9 |
0.5 |
| C1 |
C6 |
C5 |
N4 |
180.9 |
180.1 |
| C5 |
C6 |
C1 |
HC6 |
180.0 |
179.8 |
| C2 |
C1 |
C7 |
C6 |
180.2 |
180.3 |
| C7 |
C1 |
C2 |
C3 |
179.6 |
180.0 |
| C7 |
C1 |
C2 |
HC2 |
359.6 |
360.0 |
| C7 |
C1 |
C6 |
C5 |
180.6 |
179.8 |
| C7 |
C1 |
C6 |
HC6 |
0.5 |
360.0 |
| N1 |
C7 |
C1 |
N2 |
179.8 |
180.0 |
| C1 |
C7 |
N1 |
HH11 |
180.0 |
179.9 |
| C1 |
C7 |
N1 |
HH12 |
360.0 |
359.7 |
| C1 |
C7 |
N2 |
HH21 |
359.9 |
360.0 |
| C3 |
C2 |
C1 |
C6 |
359.8 |
0.3 |
| C3 |
C2 |
C1 |
C7 |
179.6 |
180.0 |
| C1 |
C2 |
C3 |
HC2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
HC3 |
180.0 |
180.1 |
| C2 |
C3 |
C4 |
C5 |
0.5 |
360.0 |
| C2 |
C3 |
C4 |
N3 |
179.1 |
180.0 |
| HC2 |
C2 |
C1 |
C6 |
179.8 |
180.3 |
| HC2 |
C2 |
C1 |
C7 |
359.6 |
360.0 |
| C1 |
C2 |
HC2 |
C3 |
180.0 |
180.0 |
| HC2 |
C2 |
C3 |
C4 |
179.8 |
180.0 |
| HC2 |
C2 |
C3 |
HC3 |
359.8 |
359.9 |
| C4 |
C3 |
C2 |
HC2 |
179.8 |
180.0 |
| C2 |
C3 |
C4 |
HC3 |
180.0 |
179.9 |
| C5 |
C4 |
C3 |
N3 |
181.4 |
179.9 |
| C3 |
C4 |
C5 |
C6 |
359.7 |
359.8 |
| C3 |
C4 |
C5 |
N4 |
178.8 |
180.1 |
| C3 |
C4 |
N3 |
C8 |
181.2 |
180.0 |
| C3 |
C4 |
N3 |
HN3 |
1.3 |
359.9 |
| HC3 |
C3 |
C2 |
HC2 |
359.8 |
359.9 |
| C2 |
C3 |
HC3 |
C4 |
180.0 |
180.1 |
| HC3 |
C3 |
C4 |
C5 |
180.5 |
180.0 |
| HC3 |
C3 |
C4 |
N3 |
359.1 |
0.1 |
| C1 |
C6 |
C5 |
C4 |
359.9 |
0.5 |
| C5 |
C4 |
C3 |
HC3 |
180.5 |
180.0 |
| C3 |
C4 |
C5 |
N3 |
178.9 |
180.1 |
| C5 |
C4 |
N3 |
C8 |
0.0 |
0.1 |
| C5 |
C4 |
N3 |
HN3 |
180.0 |
179.9 |
| C6 |
C5 |
C4 |
N4 |
180.8 |
179.7 |
| C4 |
C5 |
C6 |
HC6 |
179.9 |
180.3 |
| C4 |
C5 |
N4 |
C8 |
0.1 |
359.9 |
| N3 |
C4 |
C3 |
HC3 |
359.1 |
0.1 |
| C3 |
C4 |
N3 |
C5 |
181.2 |
179.9 |
| N3 |
C4 |
C5 |
C6 |
180.7 |
179.7 |
| N3 |
C4 |
C5 |
N4 |
359.9 |
0.0 |
| C8 |
N3 |
C4 |
HN3 |
180.0 |
180.1 |
| C4 |
N3 |
C8 |
N4 |
0.0 |
359.9 |
| C4 |
N3 |
C8 |
C1' |
187.0 |
180.0 |
| C5 |
C6 |
C1 |
C7 |
180.6 |
179.8 |
| C1 |
C6 |
C5 |
HC6 |
180.0 |
180.2 |
| C6 |
C5 |
C4 |
N3 |
180.7 |
179.7 |
| C4 |
C5 |
C6 |
N4 |
179.0 |
180.4 |
| C6 |
C5 |
N4 |
C8 |
179.2 |
180.3 |
| N4 |
C5 |
C4 |
N3 |
359.9 |
0.0 |
| C4 |
C5 |
N4 |
C6 |
180.9 |
179.6 |
| N4 |
C5 |
C6 |
HC6 |
0.9 |
359.9 |
| N3 |
C8 |
N4 |
C5 |
359.9 |
0.1 |
| C5 |
N4 |
C8 |
C1' |
172.8 |
180.0 |
| HC6 |
C6 |
C1 |
C7 |
0.5 |
360.0 |
| C1 |
C6 |
HC6 |
C5 |
180.0 |
179.8 |
| HC6 |
C6 |
C5 |
N4 |
0.9 |
359.9 |
| C1 |
C7 |
N1 |
N2 |
180.2 |
180.0 |
| N1 |
C7 |
N2 |
HH21 |
180.1 |
180.0 |
| HH11 |
N1 |
C7 |
HH12 |
180.0 |
180.2 |
| C1 |
C7 |
N2 |
N1 |
179.8 |
180.0 |
| N2 |
C7 |
N1 |
HH11 |
359.8 |
359.9 |
| N2 |
C7 |
N1 |
HH12 |
179.8 |
179.7 |
| HH11 |
N1 |
C7 |
N2 |
359.8 |
359.9 |
| C7 |
N1 |
HH11 |
HH12 |
180.0 |
179.8 |
| HH12 |
N1 |
C7 |
N2 |
179.8 |
179.7 |
| C7 |
N1 |
HH12 |
HH11 |
180.0 |
180.2 |
| C4 |
N3 |
C8 |
HN3 |
180.0 |
179.9 |
| C5 |
N4 |
C8 |
N3 |
359.9 |
0.1 |
| N4 |
C8 |
N3 |
C1' |
173.0 |
179.9 |
| N3 |
C8 |
C1' |
C2' |
184.4 |
39.9 |
| N3 |
C8 |
C1' |
C6' |
5.5 |
219.6 |
| C4 |
N3 |
HN3 |
C8 |
180.0 |
180.2 |
| HN3 |
N3 |
C8 |
N4 |
180.0 |
180.0 |
| HN3 |
N3 |
C8 |
C1' |
7.0 |
0.1 |
| N4 |
C8 |
N3 |
HN3 |
180.0 |
180.0 |
| N3 |
C8 |
N4 |
C1' |
187.1 |
180.1 |
| N4 |
C8 |
C1' |
C2' |
12.2 |
220.0 |
| N4 |
C8 |
C1' |
C6' |
193.3 |
39.8 |
| C1' |
C8 |
N3 |
HN3 |
7.0 |
0.1 |
| N3 |
C8 |
C1' |
N4 |
172.3 |
179.9 |
| C2' |
C1' |
C8 |
C6' |
178.9 |
180.3 |
| C8 |
C1' |
C2' |
C3' |
181.0 |
180.0 |
| C8 |
C1' |
C2' |
HC'2 |
0.9 |
359.9 |
| C8 |
C1' |
C6' |
C5' |
178.5 |
179.8 |
| C8 |
C1' |
C6' |
O6' |
357.1 |
0.2 |
| C8 |
C1' |
C2' |
C6' |
181.1 |
179.7 |
| C2' |
C1' |
C6' |
C5' |
359.6 |
359.5 |
| C2' |
C1' |
C6' |
O6' |
178.3 |
179.9 |
| C3' |
C2' |
C1' |
HC'2 |
180.0 |
180.1 |
| C1' |
C2' |
C3' |
C4' |
0.3 |
359.9 |
| C1' |
C2' |
C3' |
HC'3 |
180.3 |
180.0 |
| C8 |
C1' |
C6' |
C2' |
178.9 |
180.3 |
| C6' |
C1' |
C2' |
C3' |
359.9 |
0.3 |
| C6' |
C1' |
C2' |
HC'2 |
179.9 |
180.2 |
| C4' |
C5' |
C6' |
C1' |
0.7 |
0.5 |
| C1' |
C6' |
C5' |
C1B |
183.4 |
180.3 |
| C5' |
C6' |
C1' |
O6' |
181.3 |
179.5 |
| C1' |
C6' |
O6' |
HO6 |
46.3 |
269.5 |
| C3' |
C2' |
C1' |
C6' |
359.9 |
0.3 |
| C1' |
C2' |
C3' |
HC'2 |
180.0 |
179.9 |
| C4' |
C3' |
C2' |
HC'3 |
180.0 |
179.9 |
| C2' |
C3' |
C4' |
C5' |
360.0 |
0.0 |
| C2' |
C3' |
C4' |
HC'4 |
180.0 |
180.0 |
| HC'2 |
C2' |
C1' |
C6' |
179.9 |
180.2 |
| C1' |
C2' |
HC'2 |
C3' |
180.0 |
180.1 |
| HC'2 |
C2' |
C3' |
C4' |
180.4 |
180.0 |
| HC'2 |
C2' |
C3' |
HC'3 |
0.4 |
0.1 |
| C4' |
C3' |
C2' |
HC'2 |
180.4 |
180.0 |
| C2' |
C3' |
C4' |
HC'3 |
180.0 |
180.1 |
| C5' |
C4' |
C3' |
HC'4 |
180.0 |
180.1 |
| C3' |
C4' |
C5' |
C6' |
359.5 |
359.7 |
| C3' |
C4' |
C5' |
C1B |
177.0 |
180.0 |
| HC'3 |
C3' |
C2' |
HC'2 |
0.4 |
0.1 |
| C2' |
C3' |
HC'3 |
C4' |
180.0 |
179.9 |
| HC'3 |
C3' |
C4' |
C5' |
180.0 |
179.9 |
| HC'3 |
C3' |
C4' |
HC'4 |
359.9 |
359.9 |
| C1' |
C6' |
C5' |
C4' |
0.7 |
0.5 |
| C5' |
C4' |
C3' |
HC'3 |
180.0 |
179.9 |
| C3' |
C4' |
C5' |
HC'4 |
180.0 |
179.9 |
| C6' |
C5' |
C4' |
C1B |
182.5 |
179.8 |
| C4' |
C5' |
C6' |
O6' |
182.1 |
180.0 |
| C4' |
C5' |
C1B |
C2B |
127.5 |
60.0 |
| C4' |
C5' |
C1B |
C6B |
309.5 |
239.7 |
| HC'4 |
C4' |
C3' |
HC'3 |
359.9 |
359.9 |
| C3' |
C4' |
HC'4 |
C5' |
180.0 |
180.1 |
| HC'4 |
C4' |
C5' |
C6' |
179.5 |
179.8 |
| HC'4 |
C4' |
C5' |
C1B |
357.0 |
0.0 |
| C1' |
C6' |
C5' |
O6' |
178.7 |
180.5 |
| C6' |
C5' |
C4' |
HC'4 |
179.5 |
179.8 |
| C4' |
C5' |
C6' |
C1B |
177.3 |
180.2 |
| C6' |
C5' |
C1B |
C2B |
304.9 |
240.2 |
| C6' |
C5' |
C1B |
C6B |
126.8 |
59.9 |
| C5' |
C6' |
O6' |
HO6 |
224.9 |
90.0 |
| C1B |
C5' |
C4' |
HC'4 |
357.0 |
0.0 |
| C4' |
C5' |
C1B |
C6' |
182.6 |
179.8 |
| C1B |
C5' |
C6' |
O6' |
4.8 |
359.8 |
| C2B |
C1B |
C5' |
C6B |
178.1 |
180.3 |
| C5' |
C1B |
C2B |
C3B |
181.7 |
180.0 |
| C5' |
C1B |
C2B |
H2' |
1.7 |
360.0 |
| C5' |
C1B |
C6B |
C5B |
178.2 |
179.7 |
| C5' |
C1B |
C6B |
H6' |
358.3 |
0.3 |
| C1' |
C6' |
O6' |
C5' |
181.3 |
179.5 |
| O6' |
C6' |
C5' |
C1B |
4.8 |
359.8 |
| C5' |
C1B |
C2B |
C6B |
181.9 |
179.7 |
| C2B |
C1B |
C6B |
C5B |
0.1 |
359.4 |
| C2B |
C1B |
C6B |
H6' |
180.1 |
180.0 |
| C3B |
C2B |
C1B |
H2' |
180.0 |
180.0 |
| C1B |
C2B |
C3B |
C4B |
0.5 |
0.0 |
| C1B |
C2B |
C3B |
H3' |
180.5 |
180.0 |
| C5' |
C1B |
C6B |
C2B |
178.2 |
180.3 |
| C6B |
C1B |
C2B |
C3B |
359.8 |
0.3 |
| C6B |
C1B |
C2B |
H2' |
179.8 |
180.3 |
| C4B |
C5B |
C6B |
C1B |
359.8 |
0.6 |
| C1B |
C6B |
C5B |
H5' |
179.8 |
180.3 |
| C5B |
C6B |
C1B |
H6' |
180.0 |
179.4 |
| C3B |
C2B |
C1B |
C6B |
359.8 |
0.3 |
| C1B |
C2B |
C3B |
H2' |
180.0 |
180.0 |
| C4B |
C3B |
C2B |
H3' |
180.0 |
180.0 |
| C2B |
C3B |
C4B |
C5B |
359.3 |
360.0 |
| C2B |
C3B |
C4B |
H4' |
179.3 |
179.9 |
| H2' |
C2B |
C1B |
C6B |
179.8 |
180.3 |
| C1B |
C2B |
H2' |
C3B |
180.0 |
180.0 |
| H2' |
C2B |
C3B |
C4B |
180.5 |
180.0 |
| H2' |
C2B |
C3B |
H3' |
0.5 |
0.0 |
| C4B |
C3B |
C2B |
H2' |
180.5 |
180.0 |
| C2B |
C3B |
C4B |
H3' |
180.0 |
180.0 |
| C5B |
C4B |
C3B |
H4' |
180.0 |
180.0 |
| C3B |
C4B |
C5B |
C6B |
0.5 |
359.7 |
| C3B |
C4B |
C5B |
H5' |
180.5 |
180.0 |
| H3' |
C3B |
C2B |
H2' |
0.5 |
0.0 |
| C2B |
C3B |
H3' |
C4B |
180.0 |
180.0 |
| H3' |
C3B |
C4B |
C5B |
179.4 |
180.0 |
| H3' |
C3B |
C4B |
H4' |
359.4 |
360.0 |
| C1B |
C6B |
C5B |
C4B |
359.8 |
0.6 |
| C5B |
C4B |
C3B |
H3' |
179.4 |
180.0 |
| C3B |
C4B |
C5B |
H4' |
180.0 |
180.0 |
| C6B |
C5B |
C4B |
H5' |
180.0 |
179.7 |
| C4B |
C5B |
C6B |
H6' |
179.8 |
180.0 |
| H4' |
C4B |
C3B |
H3' |
359.4 |
360.0 |
| C3B |
C4B |
H4' |
C5B |
180.0 |
180.0 |
| H4' |
C4B |
C5B |
C6B |
180.5 |
179.7 |
| H4' |
C4B |
C5B |
H5' |
0.5 |
0.0 |
| C1B |
C6B |
C5B |
H6' |
180.0 |
180.6 |
| C6B |
C5B |
C4B |
H4' |
180.5 |
179.7 |
| C4B |
C5B |
C6B |
H5' |
180.0 |
180.3 |
| H5' |
C5B |
C4B |
H4' |
0.5 |
0.0 |
| C4B |
C5B |
H5' |
C6B |
180.0 |
179.7 |
| H5' |
C5B |
C6B |
H6' |
359.8 |
359.7 |
| C1B |
C6B |
H6' |
C5B |
180.0 |
179.4 |
| H6' |
C6B |
C5B |
H5' |
359.8 |
359.7 |