PDB Chemical Component 12Z

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 12Z

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.360 1.383
C1 S5 1.765 1.762
C1 C6 1.488 1.407
C2 N3 1.388 1.312
C2 N7 1.378 1.385
N3 C4 1.321 1.302
C4 S5 1.742 1.708
C4 N8 1.361 1.377
C6 O9 1.250 1.220
C6 C13 1.502 1.479
N8 C18 1.439 1.465
C10 N11 1.374 1.319
C10 C15 1.431 1.384
N11 C12 1.378 1.316
C12 C13 1.436 1.396
C13 C14 1.445 1.400
C14 C15 1.428 1.383
C16 C17 1.548 1.530
C16 C21 1.560 1.530
C17 C18 1.572 1.530
C18 C19 1.555 1.530
C19 C20 1.555 1.530
C20 C21 1.556 1.530
N7 HN7 1.000 0.970
N7 HN7A 1.000 0.970
N8 HN8 1.000 0.970
C10 H10 1.080 1.080
C12 H12 1.080 1.080
C14 H14 1.080 1.080
C15 H15 1.081 1.080
C16 H16 1.100 1.090
C16 H16A 1.100 1.090
C17 H17 1.100 1.090
C17 H17A 1.100 1.090
C18 H18 1.100 1.090
C19 H19 1.100 1.090
C19 H19A 1.100 1.091
C20 H20 1.100 1.090
C20 H20A 1.100 1.090
C21 H21 1.100 1.090
C21 H21A 1.100 1.090

Bond Angles for 12Z

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 S5 110.9 107.7
C2 C1 C6 127.4 126.1
C1 C2 N3 114.0 113.5
C1 C2 N7 125.4 123.2
S5 C1 C6 121.7 126.2
C1 S5 C4 88.4 90.6
C1 C6 O9 118.8 120.0
C1 C6 C13 120.6 120.0
N3 C2 N7 120.6 123.2
C2 N3 C4 112.5 117.3
C2 N7 HN7 109.5 120.0
C2 N7 HN7A 109.5 120.0
N3 C4 S5 114.2 110.9
N3 C4 N8 124.2 124.6
S5 C4 N8 121.5 124.6
C4 N8 C18 130.9 120.0
C4 N8 HN8 102.9 120.0
O9 C6 C13 120.6 120.0
C6 C13 C12 119.6 120.6
C6 C13 C14 123.2 120.6
N8 C18 C17 108.4 109.5
N8 C18 C19 111.6 109.5
C18 N8 HN8 102.9 120.0
N8 C18 H18 108.9 109.5
N11 C10 C15 122.7 121.1
C10 N11 C12 119.2 121.9
N11 C10 H10 118.6 119.5
C10 C15 C14 117.9 119.3
C15 C10 H10 118.7 119.4
C10 C15 H15 121.1 120.3
N11 C12 C13 122.8 120.6
N11 C12 H12 118.6 119.7
C12 C13 C14 117.1 118.8
C13 C12 H12 118.6 119.7
C13 C14 C15 120.2 118.3
C13 C14 H14 119.9 120.8
C15 C14 H14 119.8 120.9
C14 C15 H15 121.1 120.3
C17 C16 C21 111.5 109.4
C16 C17 C18 111.4 109.5
C17 C16 H16 108.8 109.4
C17 C16 H16A 108.8 109.4
C16 C17 H17 108.9 109.5
C16 C17 H17A 108.8 109.5
C16 C21 C20 111.9 109.5
C21 C16 H16 108.8 109.5
C21 C16 H16A 108.8 109.5
C16 C21 H21 108.7 109.5
C16 C21 H21A 108.7 109.4
C17 C18 C19 109.8 109.5
C18 C17 H17 108.8 109.5
C18 C17 H17A 108.9 109.4
C17 C18 H18 110.7 109.4
C18 C19 C20 110.3 109.5
C19 C18 H18 107.4 109.5
C18 C19 H19 109.2 109.5
C18 C19 H19A 109.2 109.4
C19 C20 C21 110.9 109.5
C20 C19 H19 109.2 109.5
C20 C19 H19A 109.2 109.5
C19 C20 H20 109.0 109.5
C19 C20 H20A 109.0 109.5
C21 C20 H20 109.0 109.4
C21 C20 H20A 109.0 109.5
C20 C21 H21 108.7 109.5
C20 C21 H21A 108.7 109.5
HN7 N7 HN7A 109.4 120.0
H16 C16 H16A 110.1 109.6
H17 C17 H17A 110.1 109.5
H19 C19 H19A 109.7 109.5
H20 C20 H20A 109.9 109.5
H21 C21 H21A 110.3 109.4

Torsion Angles for 12Z

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
S5 C1 C2 C6 180.3 180.2
C2 C1 S5 C4 0.3 0.0
C2 C1 C6 O9 8.4 6.7
C2 C1 C6 C13 189.4 186.7
N3 C2 C1 N7 179.7 179.9
C1 C2 N3 C4 359.8 0.1
C1 C2 N7 HN7 179.7 359.9
C1 C2 N7 HN7A 299.7 180.0
C2 C1 S5 C6 179.7 179.8
S5 C1 C2 N3 359.9 359.9
S5 C1 C2 N7 180.1 180.0
S5 C1 C6 O9 188.1 186.4
S5 C1 C6 C13 9.1 6.4
N3 C4 S5 C1 359.6 0.0
C1 S5 C4 N8 178.7 180.0
C2 C1 C6 S5 180.3 180.3
C6 C1 C2 N3 179.6 179.7
C6 C1 C2 N7 359.8 359.8
C6 C1 S5 C4 180.6 180.2
O9 C6 C1 C13 179.0 180.0
C1 C6 C13 C12 223.6 207.6
C1 C6 C13 C14 44.0 27.5
N3 C2 C1 S5 359.9 359.9
N3 C2 C1 C6 179.6 179.7
C1 C2 N3 N7 180.2 180.1
N3 C2 N7 HN7 0.0 180.0
N3 C2 N7 HN7A 120.0 0.1
C2 N3 C4 S5 0.5 360.0
C2 N3 C4 N8 181.4 180.0
N7 C2 C1 S5 180.1 180.0
N7 C2 C1 C6 359.8 359.8
C1 C2 N7 N3 179.7 179.9
N7 C2 N3 C4 179.5 180.0
HN7 N7 C2 HN7A 240.0 179.9
C1 S5 C4 N3 359.6 0.0
C4 N3 C2 N7 179.5 180.0
S5 C4 N3 N8 179.1 180.0
N3 C4 N8 C18 177.8 0.0
N3 C4 N8 HN8 297.8 180.0
C4 S5 C1 C6 180.6 180.2
N3 C4 S5 N8 180.9 180.0
S5 C4 N8 C18 358.8 180.0
S5 C4 N8 HN8 118.8 360.0
N3 C4 N8 S5 179.0 180.0
C4 N8 C18 C17 279.8 205.0
C4 N8 C18 C19 158.8 85.0
C18 N8 C4 HN8 240.0 180.0
C4 N8 C18 H18 40.4 325.0
C1 C6 O9 C13 181.0 180.0
O9 C6 C13 C12 44.6 27.5
O9 C6 C13 C14 225.0 207.5
C1 C6 C13 O9 179.0 180.0
N11 C12 C13 C6 180.1 180.0
C12 C13 C6 C14 179.6 180.1
C6 C13 C12 H12 0.1 359.9
C6 C13 C14 C15 180.0 180.0
C6 C13 C14 H14 0.0 0.0
C4 N8 C18 HN8 120.0 180.0
C16 C17 C18 N8 180.5 180.0
C17 C18 N8 C19 121.0 120.0
N8 C18 C17 H17 60.5 60.0
N8 C18 C17 H17A 300.5 300.0
C17 C18 N8 H18 239.5 240.0
N8 C18 C19 C20 179.1 180.0
C19 C18 N8 H18 118.4 120.0
N8 C18 C19 H19 299.1 300.0
N8 C18 C19 H19A 59.1 60.0
N11 C10 C15 C14 360.0 0.0
C15 C10 N11 H10 180.0 180.3
N11 C10 C15 H15 180.0 180.0
C10 N11 C12 C13 360.0 359.9
C10 N11 C12 H12 180.0 180.0
C15 C10 N11 C12 0.2 0.0
N11 C10 C15 H10 180.0 179.7
C13 C14 C15 C10 359.7 360.0
C10 C15 C14 H14 179.7 180.0
C14 C15 C10 H15 180.0 180.0
C6 C13 C12 N11 180.1 180.0
C12 N11 C10 C15 0.2 0.0
C12 N11 C10 H10 180.2 179.8
N11 C12 C13 C14 359.7 0.1
C13 C12 N11 H12 180.0 179.9
C6 C13 C12 C14 180.4 179.9
N11 C12 C13 H12 180.0 180.1
C12 C13 C14 C15 0.4 360.0
C12 C13 C14 H14 180.4 179.9
C6 C13 C14 C12 179.6 180.1
C10 C15 C14 C13 359.7 360.0
C14 C13 C12 H12 179.7 180.0
C15 C14 C13 H14 180.0 180.0
C13 C14 C15 H15 179.7 180.0
C14 C15 C10 H10 180.0 180.3
C10 C15 C14 H15 180.0 180.0
C13 C14 C15 H14 180.0 180.0
N8 C18 C17 C16 180.5 180.0
C17 C16 C21 C20 306.9 300.0
C21 C16 C17 H16 240.0 240.1
C21 C16 C17 H16A 120.0 120.0
C17 C16 C21 H21 66.8 60.0
C17 C16 C21 H21A 186.9 180.0
C16 C17 C18 C19 302.6 300.0
C18 C17 C16 H17 240.0 240.0
C18 C17 C16 H17A 120.0 120.0
C16 C17 C18 H18 61.1 60.0
H16 C16 C17 H16A 240.0 239.9
H17 C17 C16 H17A 240.0 240.0
C21 C16 C17 C18 54.3 60.0
C17 C16 C21 H16 120.0 119.9
C17 C16 C21 H16A 240.0 240.0
C21 C16 C17 H17 174.3 180.0
C21 C16 C17 H17A 294.3 300.0
C19 C20 C21 C16 55.0 60.0
C16 C21 C20 H20 295.0 300.0
C16 C21 C20 H20A 175.0 180.0
C20 C21 C16 H21 240.0 240.0
C20 C21 C16 H21A 120.0 120.0
H16 C16 C21 H16A 120.0 120.1
H21 C21 C16 H21A 240.0 240.0
N8 C18 C17 C19 237.9 240.0
C17 C18 N8 HN8 159.9 25.0
N8 C18 C17 H18 119.4 120.0
C18 C17 C16 C21 54.3 60.0
C18 C17 C16 H16 174.3 179.9
C18 C17 C16 H16A 294.3 300.0
C16 C17 C18 H17 120.0 120.0
C16 C17 C18 H17A 240.0 240.0
C17 C18 C19 C20 58.9 59.9
C19 C18 C17 H18 241.5 240.0
C17 C18 C19 H19 178.9 180.0
C17 C18 C19 H19A 298.9 300.0
H17 C17 C18 H17A 120.0 120.0
N8 C18 C19 C17 120.2 120.0
C19 C18 N8 HN8 38.8 265.0
N8 C18 C19 H18 240.7 240.0
C19 C18 C17 H17 182.6 180.0
C19 C18 C17 H17A 62.6 60.0
C17 C18 C19 H18 120.5 119.9
C18 C19 C20 C21 301.9 300.1
C20 C19 C18 H19 240.0 240.0
C20 C19 C18 H19A 120.0 120.0
C18 C19 C20 H20 62.0 60.0
C18 C19 C20 H20A 181.9 180.0
H19 C19 C18 H19A 240.0 240.0
C16 C21 C20 C19 55.0 60.0
C20 C19 C18 H18 298.4 300.0
C18 C19 C20 H19 120.0 120.0
C18 C19 C20 H19A 240.0 240.1
C21 C20 C19 H20 240.0 240.0
C21 C20 C19 H20A 120.0 120.0
C19 C20 C21 H21 295.0 299.9
C19 C20 C21 H21A 174.9 180.0
H19 C19 C20 H19A 120.0 120.1
H20 C20 C19 H20A 240.0 240.0
C20 C21 C16 H16 186.9 180.1
C20 C21 C16 H16A 66.9 59.9
C16 C21 C20 H21 120.0 120.1
C16 C21 C20 H21A 240.0 240.0
C21 C20 C19 H19 181.9 180.0
C21 C20 C19 H19A 61.9 60.0
C19 C20 C21 H20 120.0 120.0
C19 C20 C21 H20A 240.0 240.0
H20 C20 C21 H20A 120.0 120.0
H21 C21 C20 H21A 120.0 119.9
C2 N7 HN7 HN7A 120.0 180.1
C2 N7 HN7A HN7 240.0 179.9
C4 N8 HN8 C18 222.2 180.0
HN8 N8 C18 C17 159.9 25.0
HN8 N8 C18 C19 38.8 265.0
HN8 N8 C18 H18 280.4 145.0
N11 C10 H10 C15 180.0 180.2
H10 C10 N11 C12 180.2 179.8
H10 C10 C15 C14 180.0 180.3
H10 C10 C15 H15 360.0 0.2
N11 C12 H12 C13 180.0 179.9
H12 C12 C13 C14 179.7 180.0
C13 C14 H14 C15 180.0 180.0
H14 C14 C15 H15 359.7 0.0
C10 C15 H15 C14 180.0 180.0
H15 C15 C10 H10 360.0 0.2
H15 C15 C14 H14 359.7 0.0
C17 C16 H16 C21 238.4 240.1
H16 C16 C17 C18 174.3 179.9
C17 C16 H16 H16A 119.2 120.0
H16 C16 C17 H17 294.3 300.0
H16 C16 C17 H17A 54.3 60.0
H16 C16 C21 C20 186.9 180.1
C21 C16 H16 H16A 240.8 239.9
H16 C16 C21 H21 306.9 300.1
H16 C16 C21 H21A 66.9 60.1
C17 C16 H16A C21 121.6 119.9
H16A C16 C17 C18 294.3 300.0
C17 C16 H16A H16 240.8 240.0
H16A C16 C17 H17 54.3 60.0
H16A C16 C17 H17A 174.3 180.1
H16A C16 C21 C20 66.9 59.9
C21 C16 H16A H16 119.2 120.0
H16A C16 C21 H21 186.8 180.0
H16A C16 C21 H21A 306.9 300.0
H17 C17 C16 C21 174.3 180.0
C16 C17 H17 C18 238.4 240.0
H17 C17 C16 H16 294.3 300.0
H17 C17 C16 H16A 54.3 60.0
C16 C17 H17 H17A 119.2 120.0
H17 C17 C18 C19 182.6 180.0
C18 C17 H17 H17A 240.8 240.0
H17 C17 C18 H18 301.1 300.0
H17A C17 C16 C21 294.3 300.0
C16 C17 H17A C18 121.6 120.0
H17A C17 C16 H16 54.3 60.0
H17A C17 C16 H16A 174.3 180.1
C16 C17 H17A H17 240.8 240.0
H17A C17 C18 C19 62.6 60.0
C18 C17 H17A H17 119.2 120.0
H17A C17 C18 H18 181.1 180.0
N8 C18 H18 C17 240.9 240.0
N8 C18 H18 C19 121.0 120.0
H18 C18 N8 HN8 280.4 145.0
C17 C18 H18 C19 240.1 240.0
H18 C18 C17 H17 301.1 300.0
H18 C18 C17 H17A 181.1 180.0
H18 C18 C19 C20 298.4 300.0
H18 C18 C19 H19 58.4 60.0
H18 C18 C19 H19A 178.4 180.0
C18 C19 H19 C20 239.4 240.0
H19 C19 C18 H18 58.4 60.0
C18 C19 H19 H19A 119.7 119.9
H19 C19 C20 C21 181.9 180.0
C20 C19 H19 H19A 240.3 239.9
H19 C19 C20 H20 302.0 300.0
H19 C19 C20 H20A 61.9 60.0
C18 C19 H19A C20 120.6 120.0
H19A C19 C18 H18 178.4 180.0
C18 C19 H19A H19 240.3 240.0
H19A C19 C20 C21 61.9 60.0
C20 C19 H19A H19 119.7 120.1
H19A C19 C20 H20 181.9 179.9
H19A C19 C20 H20A 301.9 299.9
C19 C20 H20 C21 238.8 240.0
H20 C20 C19 H19 302.0 300.0
H20 C20 C19 H19A 181.9 179.9
C19 C20 H20 H20A 119.4 120.0
C21 C20 H20 H20A 240.6 240.0
H20 C20 C21 H21 175.0 180.0
H20 C20 C21 H21A 54.9 60.0
C19 C20 H20A C21 121.1 120.0
H20A C20 C19 H19 61.9 60.0
H20A C20 C19 H19A 301.9 299.9
C19 C20 H20A H20 240.6 240.0
C21 C20 H20A H20 119.5 120.0
H20A C20 C21 H21 55.0 60.0
H20A C20 C21 H21A 294.9 300.0
C16 C21 H21 C20 238.1 239.9
H21 C21 C16 H16 306.9 300.1
H21 C21 C16 H16A 186.8 180.0
C16 C21 H21 H21A 119.0 120.0
H21 C21 C20 H20 175.0 180.0
H21 C21 C20 H20A 55.0 60.0
C20 C21 H21 H21A 241.0 240.0
C16 C21 H21A C20 121.9 120.0
H21A C21 C16 H16 66.9 60.1
H21A C21 C16 H16A 306.9 300.0
C16 C21 H21A H21 241.0 240.0
H21A C21 C20 H20 54.9 60.0
H21A C21 C20 H20A 294.9 300.0
C20 C21 H21A H21 119.0 120.0