PDB Chemical Component 12U

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 12U

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O22 C7 1.230 1.213
C7 N23 1.298 1.348
C7 C1 1.463 1.507
N23 C24 1.429 1.465
C24 C25 1.523 1.506
C25 C26 1.406 1.384
C25 C30 1.375 1.383
C26 C27 1.411 1.380
C27 C28 1.372 1.395
C28 C9 1.517 1.481
C28 C29 1.402 1.394
C9 N10 1.322 1.303
C9 N11 1.325 1.378
C29 C30 1.411 1.380
C1 C2 1.533 1.549
C1 N1 1.270 1.474
C2 C3 1.498 1.552
C3 C4 1.522 1.543
C4 N1 1.478 1.470
N1 C14 1.298 1.348
C14 O32 1.234 1.213
C14 C5 1.507 1.506
C5 N21 1.488 1.468
N21 C49 1.479 1.470
C49 C48 1.493 1.543
C49 C50 1.374 1.505
C48 C47 1.511 1.455
C47 C46 1.499 1.542
C46 C52 1.457 1.505
C52 C51 1.460 1.541
C51 C50 1.462 1.541
N23 HN23 1.000 0.971
C24 H24 1.100 1.090
C24 H24A 1.100 1.090
C26 H26 1.080 1.080
C27 H27 1.080 1.080
N10 HN10 1.000 0.970
N11 HN11 1.000 0.970
N11 HN1A 1.000 0.969
C29 H29 1.080 1.080
C30 H30 1.080 1.080
C1 H1 1.100 1.090
C2 H2 1.100 1.090
C2 H2A 1.101 1.090
C3 H3 1.100 1.091
C3 H3A 1.100 1.090
C4 H4 1.100 1.090
C4 H4A 1.100 1.091
C5 H5 1.100 1.090
C5 H5A 1.100 1.090
N21 HN21 1.000 1.008
C49 H49 1.100 1.089
C48 H48 1.100 1.090
C48 H48A 1.100 1.090
C47 H47 1.100 1.090
C47 H47A 1.100 1.091
C46 H46 1.100 1.090
C46 H46A 1.101 1.090
C52 H52 1.100 1.090
C52 H52A 1.100 1.090
C51 H51 1.099 1.090
C51 H51A 1.100 1.089
C50 H50 1.100 1.091
C50 H50A 1.100 1.090

Bond Angles for 12U

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O22 C7 N23 115.6 120.0
C7 N23 C24 128.1 120.0
C7 N23 HN23 116.0 120.0
C7 C1 C2 107.0 110.3
C7 C1 H1 102.3 110.3
N23 C24 C25 110.4 109.5
C24 N23 HN23 116.0 120.0
N23 C24 H24 109.2 109.4
N23 C24 H24A 109.0 109.4
C24 C25 C26 118.0 119.8
C24 C25 C30 127.4 119.9
C25 C24 H24 109.2 109.5
C25 C24 H24A 109.0 109.5
C30 C25 C26 114.6 120.2
C25 C26 C27 125.6 120.1
C25 C26 H26 117.2 119.9
C25 C30 H30 120.3 119.9
C26 C27 H27 120.0 120.1
C28 C9 N10 116.2 120.0
C28 C9 N11 122.5 120.0
C28 C29 H29 116.8 120.0
N10 C9 N11 121.3 120.0
C9 N10 HN10 107.8 119.9
C9 N11 HN11 107.8 120.0
C9 N11 HN1A 126.1 120.0
C29 C30 H30 120.3 120.0
C1 C2 C3 105.1 101.5
C2 C1 H1 117.6 110.4
C1 C2 H2 110.9 111.0
C1 C2 H2A 111.9 111.0
C2 C3 C4 102.6 102.9
C3 C2 H2 111.0 111.0
C3 C2 H2A 111.9 111.0
C2 C3 H3 111.9 110.7
C2 C3 H3A 113.3 110.7
C4 C3 H3 111.8 110.7
C4 C3 H3A 113.3 110.8
C3 C4 H4 111.2 109.9
C3 C4 H4A 112.3 109.8
O32 C14 C5 117.7 120.0
C14 C5 N21 109.7 109.5
C14 C5 H5 109.4 109.5
C14 C5 H5A 109.3 109.5
C5 N21 C49 116.6 111.0
N21 C5 H5 109.4 109.5
N21 C5 H5A 109.4 109.5
C5 N21 HN21 107.2 111.0
N21 C49 C48 111.9 109.6
N21 C49 C50 102.6 109.6
C49 N21 HN21 107.1 111.0
N21 C49 H49 119.9 109.6
C48 C49 C50 124.8 108.5
C49 C48 C47 108.9 112.4
C48 C49 H49 93.9 109.7
C49 C48 H48 109.7 108.9
C49 C48 H48A 109.8 108.9
C49 C50 C51 95.2 112.5
C50 C49 H49 104.8 109.8
C49 C50 H50 114.6 108.9
C49 C50 H50A 117.4 108.9
C48 C47 C46 115.6 112.4
C47 C48 H48 109.6 108.9
C47 C48 H48A 109.8 108.9
C48 C47 H47 107.5 108.9
C48 C47 H47A 106.0 108.9
C47 C46 C52 113.1 108.5
C46 C47 H47 107.4 108.9
C46 C47 H47A 106.0 108.9
C47 C46 H46 108.3 109.6
C47 C46 H46A 107.4 109.6
C46 C52 C51 109.6 112.5
C52 C46 H46 108.3 109.6
C52 C46 H46A 107.5 109.6
C46 C52 H52 109.4 108.9
C46 C52 H52A 109.4 108.9
C52 C51 C50 125.8 112.8
C51 C52 H52 109.5 108.9
C51 C52 H52A 109.4 108.8
C52 C51 H51 104.4 108.8
C52 C51 H51A 100.5 108.8
C50 C51 H51 104.4 108.8
C50 C51 H51A 100.6 108.8
C51 C50 H50 114.5 108.8
C51 C50 H50A 117.4 108.9
H24 C24 H24A 110.1 109.5
HN11 N11 HN1A 126.1 120.0
H2 C2 H2A 106.1 110.9
H3 C3 H3A 104.3 110.8
H4 C4 H4A 105.6 110.0
H5 C5 H5A 109.6 109.4
H48 C48 H48A 109.0 108.8
H47 C47 H47A 114.4 108.8
H46 C46 H46A 112.3 109.8
H52 C52 H52A 109.5 108.7
H51 C51 H51A 123.4 108.7
H50 C50 H50A 99.0 108.8

Torsion Angles for 12U

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O22 C7 N23 C24 351.9 359.9
O22 C7 N23 HN23 171.9 180.0
O22 C7 C1 C2 102.3 86.4
O22 C7 C1 H1 226.5 208.6
N23 C7 C1 C2 283.5 266.0
N23 C7 C1 H1 47.7 28.2
C7 N23 C24 C25 104.1 180.0
C24 N23 C7 HN23 180.0 179.9
C7 N23 C24 H24 224.2 300.1
C7 N23 C24 H24A 344.5 60.0
C7 C1 C2 C3 250.4 204.1
C2 C1 C7 H1 235.8 237.8
C7 C1 C2 H2 10.5 322.2
C7 C1 C2 H2A 128.8 86.1
C7 N23 C24 HN23 180.0 180.1
N23 C24 C25 C26 115.3 90.0
N23 C24 C25 C30 295.3 269.8
C25 C24 N23 H24 240.0 239.9
C25 C24 N23 H24A 119.6 120.0
H24 C24 N23 H24A 239.7 240.0
C25 C24 N23 HN23 284.1 359.9
N23 C24 C25 H24 120.0 120.0
N23 C24 C25 H24A 240.4 240.0
C30 C25 C24 C26 180.0 179.8
C24 C25 C26 C27 180.0 180.0
C24 C25 C26 H26 0.0 0.1
C24 C25 C30 H30 360.0 359.9
H24 C24 C25 H24A 120.4 120.0
C24 C25 C26 C30 180.0 179.8
C26 C25 C24 H24 355.2 330.0
C26 C25 C24 H24A 234.9 209.9
C26 C25 C30 H30 180.0 179.7
C25 C26 C27 H27 179.9 180.0
C24 C25 C30 C26 180.0 180.2
C30 C25 C24 H24 175.3 149.8
C30 C25 C24 H24A 54.9 29.8
C30 C25 C26 C27 0.0 0.2
C30 C25 C26 H26 180.0 180.3
C29 C30 C25 H30 180.0 179.8
C25 C26 C27 H26 180.0 180.0
C25 C26 C27 C28 359.9 360.0
C27 C28 C29 H29 179.8 180.0
C9 C28 C29 H29 0.1 360.0
N10 C9 C28 N11 179.9 180.0
C28 C9 N10 HN10 180.0 180.0
C28 C9 N11 HN11 360.0 0.0
C28 C9 N11 HN1A 180.0 180.0
C28 C29 C30 H30 180.1 180.3
C28 C9 N10 N11 180.1 180.0
N10 C9 N11 HN11 180.0 180.0
N10 C9 N11 HN1A 0.1 0.0
C28 C9 N11 N10 179.9 180.0
N11 C9 N10 HN10 359.9 359.9
HN11 N11 C9 HN1A 179.9 180.0
C29 C30 C25 C26 0.0 359.5
C25 C30 C29 H30 180.0 180.2
C7 C1 C2 H1 114.3 122.2
C1 C2 C3 C4 336.0 35.5
C3 C2 C1 H2 240.0 241.9
C3 C2 C1 H2A 121.6 118.0
C1 C2 C3 H3 96.0 153.9
C1 C2 C3 H3A 213.5 277.1
H2 C2 C1 H2A 241.7 236.1
C3 C2 C1 H1 136.2 81.9
C1 C2 C3 H2 120.0 118.1
C1 C2 C3 H2A 238.3 242.0
C4 C3 C2 H3 240.0 241.6
C4 C3 C2 H3A 122.5 118.4
C2 C3 C4 H4 138.5 97.2
C2 C3 C4 H4A 256.6 218.4
H2 C2 C3 H2A 118.3 123.9
H3 C3 C2 H3A 242.5 236.8
C4 C3 C2 H2 216.0 277.4
C4 C3 C2 H2A 97.6 153.6
C2 C3 C4 H3 120.0 118.3
C2 C3 C4 H3A 237.5 241.6
H3 C3 C4 H3A 117.5 123.3
H4 C4 C3 H4A 241.9 238.9
N1 C14 C5 H5 270.3 300.0
N1 C14 C5 H5A 30.4 60.0
O32 C14 C5 N21 332.9 0.0
O32 C14 C5 H5 92.9 120.1
O32 C14 C5 H5A 213.0 240.0
C14 C5 N21 C49 278.6 180.0
N21 C5 C14 H5 240.0 240.0
N21 C5 C14 H5A 119.9 120.0
C14 C5 N21 HN21 38.6 303.9
H5 C5 C14 H5A 239.9 240.0
C14 C5 N21 H5 120.0 120.0
C14 C5 N21 H5A 240.1 240.0
C5 N21 C49 C48 272.3 205.0
C5 N21 C49 C50 136.2 86.0
C49 N21 C5 HN21 240.0 236.0
C5 N21 C49 H49 20.7 325.4
H5 C5 N21 H5A 120.1 120.0
C49 N21 C5 H5 158.6 60.0
C49 N21 C5 H5A 38.5 300.0
C5 N21 C49 HN21 120.0 124.0
C48 C49 N21 C50 136.1 119.0
N21 C49 C48 C47 273.8 160.4
C48 C49 N21 H49 251.6 239.6
N21 C49 C48 H48 33.8 281.1
N21 C49 C48 H48A 153.6 39.6
N21 C49 C50 C51 163.2 213.9
C50 C49 N21 H49 115.5 120.6
N21 C49 C50 H50 283.2 334.6
N21 C49 C50 H50A 38.7 93.1
N21 C49 C48 C50 235.6 240.4
C48 C49 N21 HN21 152.3 81.0
N21 C49 C48 H49 124.4 120.4
C48 C49 C50 C51 34.9 94.2
C50 C49 C48 H49 248.9 240.0
C48 C49 C50 H50 154.9 214.9
C48 C49 C50 H50A 270.4 333.4
C49 C48 C47 C46 269.6 61.9
C47 C48 C49 H48 240.0 239.3
C47 C48 C49 H48A 120.2 120.8
C49 C48 C47 H47 29.6 182.7
C49 C48 C47 H47A 152.4 301.2
H48 C48 C49 H48A 240.2 241.5
N21 C49 C50 C48 128.3 119.7
C50 C49 N21 HN21 16.2 322.0
N21 C49 C50 H49 234.0 239.5
C50 C49 C48 C47 38.2 280.0
C48 C49 C50 H49 105.7 119.8
C50 C49 C48 H48 158.2 40.7
C50 C49 C48 H48A 278.0 159.2
C52 C51 C50 C49 254.4 318.2
C49 C50 C51 H51 134.4 197.4
C49 C50 C51 H51A 5.7 79.1
C51 C50 C49 H50 240.0 239.3
C51 C50 C49 H50A 124.5 120.8
H50 C50 C49 H50A 244.5 241.5
C47 C48 C49 C50 38.2 280.0
C47 C48 C49 H49 149.4 40.0
C49 C48 C47 H48 120.0 120.8
C49 C48 C47 H48A 239.8 239.2
C48 C47 C46 C52 62.4 280.0
C46 C47 C48 H47 240.0 239.2
C46 C47 C48 H47A 117.2 120.8
C48 C47 C46 H46 182.5 39.7
C48 C47 C46 H46A 304.0 160.3
H48 C48 C47 H48A 119.7 118.5
H47 C47 C48 H47A 237.2 241.5
C46 C47 C48 H48 149.6 301.2
C46 C47 C48 H48A 29.8 182.7
C48 C47 C46 H47 120.0 120.8
C48 C47 C46 H47A 242.8 239.2
C47 C46 C52 C51 326.5 94.1
C52 C46 C47 H46 240.0 240.3
C52 C46 C47 H46A 118.4 119.7
C47 C46 C52 H52 86.5 215.0
C47 C46 C52 H52A 206.5 333.4
H47 C47 C46 H47A 122.8 118.5
H46 C46 C47 H46A 238.4 239.4
C52 C46 C47 H47 302.4 159.2
C52 C46 C47 H47A 179.6 40.8
C47 C46 C52 H46 120.0 119.7
C47 C46 C52 H46A 241.6 240.3
C46 C52 C51 C50 81.9 318.3
C51 C52 C46 H52 240.0 239.2
C51 C52 C46 H52A 120.0 120.8
C46 C52 C51 H51 201.9 79.1
C46 C52 C51 H51A 330.6 197.4
H46 C46 C52 H46A 121.6 120.6
H52 C52 C46 H52A 240.0 241.6
C49 C50 C51 C52 254.4 318.2
C51 C52 C46 H46 206.5 334.4
C51 C52 C46 H46A 84.9 213.8
C46 C52 C51 H52 120.0 120.8
C46 C52 C51 H52A 240.0 239.2
C50 C51 C52 H51 240.0 239.2
C50 C51 C52 H51A 111.3 120.9
C52 C51 C50 H50 134.4 197.5
C52 C51 C50 H50A 18.9 79.1
H52 C52 C51 H52A 120.0 118.4
H51 C51 C52 H51A 231.3 241.7
C51 C50 C49 H49 289.2 334.4
C49 C50 C51 H50 120.0 120.8
C49 C50 C51 H50A 235.5 239.2
C50 C51 C52 H52 321.9 197.5
C50 C51 C52 H52A 201.9 79.1
C52 C51 C50 H51 120.0 120.8
C52 C51 C50 H51A 248.7 239.1
H51 C51 C50 H51A 128.7 118.3
H50 C50 C51 H50A 115.5 118.4
C7 N23 HN23 C24 180.0 179.9
HN23 N23 C24 C25 284.1 359.9
HN23 N23 C24 H24 44.2 120.0
HN23 N23 C24 H24A 164.5 240.0
N23 C24 H24 C25 239.2 240.0
H24 C24 N23 HN23 44.2 120.0
N23 C24 H24 H24A 119.6 119.9
H24 C24 C25 C26 355.2 330.0
H24 C24 C25 C30 175.3 149.8
C25 C24 H24 H24A 240.4 240.0
N23 C24 H24A C25 120.5 120.0
H24A C24 N23 HN23 164.5 240.0
N23 C24 H24A H24 240.3 240.1
H24A C24 C25 C26 234.9 209.9
H24A C24 C25 C30 54.9 29.8
C25 C24 H24A H24 119.8 120.1
C25 C26 H26 C27 180.0 180.0
H26 C26 C27 H27 359.9 360.0
HN10 N10 C9 N11 359.9 359.9
C9 N11 HN11 HN1A 180.1 180.0
C9 N11 HN1A HN11 179.9 180.0
H29 C29 C30 H30 0.1 0.0
H30 C30 C25 C26 180.0 179.7
C7 C1 H1 C2 243.2 237.8
H1 C1 C2 C3 136.2 81.9
H1 C1 C2 H2 256.2 200.0
H1 C1 C2 H2A 14.5 323.9
C1 C2 H2 C3 243.6 247.8
H2 C2 C1 H1 256.2 200.0
C1 C2 H2 H2A 121.8 124.0
H2 C2 C3 C4 216.0 277.4
C3 C2 H2 H2A 238.2 236.1
H2 C2 C3 H3 336.0 35.8
H2 C2 C3 H3A 93.5 159.0
C1 C2 H2A C3 117.7 112.1
H2A C2 C1 H1 14.5 323.9
C1 C2 H2A H2 238.8 236.0
H2A C2 C3 C4 97.6 153.6
C3 C2 H2A H2 121.2 123.9
H2A C2 C3 H3 217.7 271.9
H2A C2 C3 H3A 335.2 35.1
C2 C3 H3 C4 245.6 246.5
H3 C3 C2 H2 336.0 35.8
H3 C3 C2 H2A 217.7 271.9
C2 C3 H3 H3A 122.8 123.2
C4 C3 H3 H3A 237.2 236.6
H3 C3 C4 H4 18.4 338.9
H3 C3 C4 H4A 136.6 100.1
C2 C3 H3A C4 116.3 113.5
H3A C3 C2 H2 93.5 159.0
H3A C3 C2 H2A 335.2 35.1
C2 C3 H3A H3 238.1 236.9
C4 C3 H3A H3 121.8 123.3
H3A C3 C4 H4 261.0 215.6
H3A C3 C4 H4A 19.1 336.7
H4 C4 C3 H3 18.4 338.9
H4 C4 C3 H3A 261.0 215.6
C3 C4 H4 H4A 122.0 121.0
H4A C4 C3 H3 136.6 100.1
H4A C4 C3 H3A 19.1 336.7
C3 C4 H4A H4 238.6 238.9
C14 C5 H5 N21 239.8 240.0
C14 C5 H5 H5A 119.9 120.0
H5 C5 N21 C49 158.6 60.0
N21 C5 H5 H5A 240.1 240.0
H5 C5 N21 HN21 278.6 183.9
C14 C5 H5A N21 120.1 120.0
C14 C5 H5A H5 240.0 240.0
H5A C5 N21 C49 38.5 300.0
N21 C5 H5A H5 119.9 120.0
H5A C5 N21 HN21 158.5 64.0
C5 N21 HN21 C49 234.2 236.0
HN21 N21 C5 H5 278.6 183.9
HN21 N21 C5 H5A 158.5 64.0
HN21 N21 C49 C48 152.3 81.0
HN21 N21 C49 C50 16.2 322.0
HN21 N21 C49 H49 260.7 201.4
N21 C49 H49 C48 242.0 239.6
N21 C49 H49 C50 114.3 120.5
H49 C49 N21 HN21 260.7 201.4
C48 C49 H49 C50 232.4 240.9
H49 C49 C48 C47 149.4 40.0
H49 C49 C48 H48 269.3 160.7
H49 C49 C48 H48A 29.1 279.2
H49 C49 C50 C51 289.2 334.4
H49 C49 C50 H50 49.2 95.1
H49 C49 C50 H50A 164.7 213.6
H48 C48 C49 C50 158.2 40.7
C49 C48 H48 C47 240.5 237.1
H48 C48 C49 H49 269.3 160.7
C49 C48 H48 H48A 120.3 118.6
H48 C48 C47 C46 149.6 301.2
C47 C48 H48 H48A 239.8 241.5
H48 C48 C47 H47 269.5 62.0
H48 C48 C47 H47A 32.4 180.4
H48A C48 C49 C50 278.0 159.2
C49 C48 H48A C47 119.7 122.9
H48A C48 C49 H49 29.1 279.2
C49 C48 H48A H48 239.8 241.4
H48A C48 C47 C46 29.8 182.7
C47 C48 H48A H48 120.1 118.5
H48A C48 C47 H47 149.8 303.5
H48A C48 C47 H47A 272.6 62.0
C48 C47 H47 C46 234.9 237.1
H47 C47 C48 H48 269.5 62.0
H47 C47 C48 H48A 149.8 303.5
C48 C47 H47 H47A 117.5 118.5
H47 C47 C46 C52 302.4 159.2
C46 C47 H47 H47A 242.5 241.4
H47 C47 C46 H46 62.4 279.0
H47 C47 C46 H46A 184.0 39.5
C48 C47 H47A C46 123.4 122.9
H47A C47 C48 H48 32.4 180.4
H47A C47 C48 H48A 272.6 62.0
C48 C47 H47A H47 241.7 241.5
H47A C47 C46 C52 179.6 40.8
C46 C47 H47A H47 118.2 118.6
H47A C47 C46 H46 299.6 160.5
H47A C47 C46 H46A 61.2 281.1
C47 C46 H46 C52 237.0 241.0
H46 C46 C47 H47 62.4 279.0
H46 C46 C47 H47A 299.6 160.5
C47 C46 H46 H46A 118.5 120.5
H46 C46 C52 C51 206.5 334.4
C52 C46 H46 H46A 241.5 239.5
H46 C46 C52 H52 326.5 95.2
H46 C46 C52 H52A 86.5 213.7
C47 C46 H46A C52 122.0 119.0
H46A C46 C47 H47 184.0 39.5
H46A C46 C47 H47A 61.2 281.1
C47 C46 H46A H46 241.0 239.5
H46A C46 C52 C51 84.9 213.8
C52 C46 H46A H46 119.0 120.5
H46A C46 C52 H52 204.9 334.6
H46A C46 C52 H52A 324.9 93.1
C46 C52 H52 C51 239.9 237.0
H52 C52 C46 H46 326.5 95.2
H52 C52 C46 H46A 204.9 334.6
C46 C52 H52 H52A 120.0 118.5
H52 C52 C51 C50 321.9 197.5
C51 C52 H52 H52A 240.0 241.6
H52 C52 C51 H51 81.9 318.3
H52 C52 C51 H51A 210.6 76.6
C46 C52 H52A C51 120.1 123.0
H52A C52 C46 H46 86.5 213.7
H52A C52 C46 H46A 324.9 93.1
C46 C52 H52A H52 240.1 241.4
H52A C52 C51 C50 201.9 79.1
C51 C52 H52A H52 120.0 118.4
H52A C52 C51 H51 321.9 199.9
H52A C52 C51 H51A 90.6 318.2
C52 C51 H51 C50 226.5 236.8
H51 C51 C52 H52 81.9 318.3
H51 C51 C52 H52A 321.9 199.9
C52 C51 H51 H51A 113.2 118.4
C50 C51 H51 H51A 246.7 241.6
H51 C51 C50 H50 14.4 76.7
H51 C51 C50 H50A 258.9 318.3
C52 C51 H51A C50 129.7 123.3
H51A C51 C52 H52 210.6 76.6
H51A C51 C52 H52A 90.6 318.2
C52 C51 H51A H51 244.9 241.6
C50 C51 H51A H51 115.1 118.3
H51A C51 C50 H50 245.7 318.4
H51A C51 C50 H50A 130.2 200.0
C49 C50 H50 C51 251.5 237.1
H50 C50 C49 H49 49.2 95.1
C49 C50 H50 H50A 125.7 118.6
H50 C50 C51 H51 14.4 76.7
H50 C50 C51 H51A 245.7 318.4
C51 C50 H50 H50A 234.2 241.5
C49 C50 H50A C51 112.4 123.0
H50A C50 C49 H49 164.7 213.6
C49 C50 H50A H50 236.2 241.4
H50A C50 C51 H51 258.9 318.3
H50A C50 C51 H51A 130.2 200.0
C51 C50 H50A H50 123.8 118.5