PDB Chemical Component 12I
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 12I
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.343 |
1.312 |
N1 |
C3 |
1.353 |
1.341 |
C2 |
N9 |
1.348 |
1.324 |
C3 |
C4 |
1.490 |
1.417 |
C3 |
C17 |
1.391 |
1.402 |
N3 |
C8 |
1.425 |
1.379 |
N3 |
C9 |
1.472 |
1.469 |
N3 |
C12 |
1.462 |
1.469 |
C4 |
C5 |
1.396 |
1.399 |
C4 |
C8 |
1.510 |
1.416 |
N4 |
C10 |
1.456 |
1.469 |
N4 |
C11 |
1.455 |
1.470 |
N4 |
C13 |
1.457 |
1.469 |
C5 |
C6 |
1.400 |
1.364 |
C6 |
C7 |
1.389 |
1.393 |
C7 |
C17 |
1.392 |
1.363 |
C8 |
N9 |
1.364 |
1.327 |
C9 |
C10 |
1.526 |
1.531 |
C11 |
C12 |
1.529 |
1.531 |
C2 |
H2 |
1.080 |
1.079 |
C17 |
H17 |
1.080 |
1.080 |
C9 |
H91C |
1.100 |
1.090 |
C9 |
H92C |
1.100 |
1.090 |
C12 |
H121 |
1.100 |
1.090 |
C12 |
H122 |
1.100 |
1.090 |
C5 |
H5 |
1.080 |
1.079 |
C10 |
H101 |
1.100 |
1.090 |
C10 |
H102 |
1.100 |
1.089 |
C11 |
H111 |
1.099 |
1.090 |
C11 |
H112 |
1.101 |
1.090 |
C13 |
H131 |
1.100 |
1.090 |
C13 |
H132 |
1.100 |
1.090 |
C13 |
H133 |
1.100 |
1.089 |
C6 |
H6 |
1.080 |
1.079 |
C7 |
H7 |
1.080 |
1.079 |
Bond Angles for 12I
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C3 |
121.3 |
120.5 |
N1 |
C2 |
N9 |
122.0 |
122.9 |
N1 |
C2 |
H2 |
119.0 |
118.6 |
N1 |
C3 |
C4 |
120.1 |
118.7 |
N1 |
C3 |
C17 |
119.4 |
122.0 |
C2 |
N9 |
C8 |
124.8 |
121.5 |
N9 |
C2 |
H2 |
119.0 |
118.5 |
C4 |
C3 |
C17 |
120.6 |
119.3 |
C3 |
C4 |
C5 |
116.6 |
119.7 |
C3 |
C4 |
C8 |
116.1 |
118.2 |
C3 |
C17 |
C7 |
120.3 |
119.6 |
C3 |
C17 |
H17 |
119.9 |
120.2 |
C8 |
N3 |
C9 |
118.8 |
111.0 |
C8 |
N3 |
C12 |
123.4 |
111.0 |
N3 |
C8 |
C4 |
128.1 |
120.9 |
N3 |
C8 |
N9 |
116.1 |
120.9 |
C9 |
N3 |
C12 |
117.8 |
110.9 |
N3 |
C9 |
C10 |
107.1 |
109.4 |
N3 |
C9 |
H91C |
110.0 |
109.5 |
N3 |
C9 |
H92C |
110.1 |
109.5 |
N3 |
C12 |
C11 |
109.5 |
109.4 |
N3 |
C12 |
H121 |
109.5 |
109.5 |
N3 |
C12 |
H122 |
109.4 |
109.5 |
C5 |
C4 |
C8 |
127.3 |
122.1 |
C4 |
C5 |
C6 |
120.7 |
119.5 |
C4 |
C5 |
H5 |
119.6 |
120.3 |
C4 |
C8 |
N9 |
115.7 |
118.2 |
C10 |
N4 |
C11 |
120.6 |
110.9 |
C10 |
N4 |
C13 |
119.7 |
110.9 |
N4 |
C10 |
C9 |
107.4 |
109.3 |
N4 |
C10 |
H101 |
110.0 |
109.6 |
N4 |
C10 |
H102 |
110.0 |
109.5 |
C11 |
N4 |
C13 |
119.7 |
111.0 |
N4 |
C11 |
C12 |
107.0 |
109.3 |
N4 |
C11 |
H111 |
110.1 |
109.5 |
N4 |
C11 |
H112 |
110.1 |
109.5 |
N4 |
C13 |
H131 |
109.5 |
109.5 |
N4 |
C13 |
H132 |
109.5 |
109.4 |
N4 |
C13 |
H133 |
109.5 |
109.5 |
C5 |
C6 |
C7 |
122.1 |
120.9 |
C6 |
C5 |
H5 |
119.7 |
120.2 |
C5 |
C6 |
H6 |
118.9 |
119.6 |
C6 |
C7 |
C17 |
119.7 |
121.0 |
C7 |
C6 |
H6 |
119.0 |
119.5 |
C6 |
C7 |
H7 |
120.2 |
119.5 |
C7 |
C17 |
H17 |
119.8 |
120.2 |
C17 |
C7 |
H7 |
120.2 |
119.5 |
C10 |
C9 |
H91C |
110.1 |
109.5 |
C10 |
C9 |
H92C |
110.1 |
109.5 |
C9 |
C10 |
H101 |
110.0 |
109.4 |
C9 |
C10 |
H102 |
110.0 |
109.5 |
C11 |
C12 |
H121 |
109.5 |
109.5 |
C11 |
C12 |
H122 |
109.5 |
109.5 |
C12 |
C11 |
H111 |
110.1 |
109.5 |
C12 |
C11 |
H112 |
110.1 |
109.5 |
H91C |
C9 |
H92C |
109.5 |
109.5 |
H121 |
C12 |
H122 |
109.4 |
109.4 |
H101 |
C10 |
H102 |
109.5 |
109.5 |
H111 |
C11 |
H112 |
109.4 |
109.5 |
H131 |
C13 |
H132 |
109.4 |
109.4 |
H131 |
C13 |
H133 |
109.5 |
109.5 |
H132 |
C13 |
H133 |
109.5 |
109.5 |
Torsion Angles for 12I
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C3 |
C4 |
0.3 |
0.0 |
C2 |
N1 |
C3 |
C17 |
180.3 |
180.0 |
N1 |
C2 |
N9 |
C8 |
359.9 |
360.0 |
N9 |
C2 |
N1 |
H2 |
180.0 |
180.0 |
C3 |
N1 |
C2 |
N9 |
359.6 |
360.0 |
C3 |
N1 |
C2 |
H2 |
179.6 |
180.0 |
C4 |
C3 |
N1 |
C17 |
179.9 |
180.0 |
N1 |
C3 |
C4 |
C5 |
179.7 |
180.0 |
N1 |
C3 |
C4 |
C8 |
0.2 |
360.0 |
N1 |
C3 |
C17 |
C7 |
180.2 |
180.0 |
N1 |
C3 |
C17 |
H17 |
0.2 |
360.0 |
N9 |
C2 |
N1 |
C3 |
359.6 |
360.0 |
N1 |
C2 |
N9 |
H2 |
180.0 |
180.0 |
N3 |
C8 |
N9 |
C2 |
179.4 |
180.0 |
C4 |
C8 |
N9 |
C2 |
0.5 |
0.0 |
N1 |
C3 |
C4 |
C17 |
180.1 |
180.0 |
C4 |
C3 |
C17 |
C7 |
0.2 |
360.0 |
C4 |
C3 |
C17 |
H17 |
180.2 |
180.0 |
N3 |
C8 |
C4 |
C3 |
180.8 |
180.0 |
C5 |
C4 |
C3 |
C8 |
179.5 |
180.0 |
C3 |
C4 |
C5 |
C6 |
0.3 |
360.0 |
C3 |
C4 |
C5 |
H5 |
180.3 |
179.9 |
C3 |
C4 |
C8 |
N9 |
359.4 |
360.0 |
N1 |
C3 |
C17 |
C4 |
179.9 |
180.0 |
C17 |
C3 |
C4 |
C5 |
359.7 |
0.0 |
C17 |
C3 |
C4 |
C8 |
180.1 |
180.0 |
C6 |
C7 |
C17 |
C3 |
360.0 |
0.0 |
C7 |
C17 |
C3 |
H17 |
180.0 |
180.0 |
C3 |
C17 |
C7 |
H7 |
179.9 |
180.0 |
C2 |
N9 |
C8 |
N3 |
179.4 |
180.0 |
C3 |
C4 |
C8 |
N3 |
180.8 |
180.0 |
C9 |
N3 |
C8 |
C12 |
178.6 |
123.9 |
C8 |
N3 |
C9 |
C10 |
128.7 |
176.8 |
C8 |
N3 |
C9 |
H91C |
248.3 |
296.7 |
C8 |
N3 |
C9 |
H92C |
9.0 |
56.8 |
C8 |
N3 |
C12 |
C11 |
174.7 |
183.2 |
C8 |
N3 |
C12 |
H121 |
294.7 |
303.2 |
C8 |
N3 |
C12 |
H122 |
54.6 |
63.2 |
C5 |
C4 |
C8 |
N3 |
1.3 |
360.0 |
C4 |
C8 |
N3 |
N9 |
178.6 |
180.0 |
C8 |
N3 |
C9 |
C12 |
181.4 |
236.1 |
C9 |
N3 |
C8 |
C4 |
180.5 |
216.6 |
C9 |
N3 |
C8 |
N9 |
1.9 |
36.6 |
C9 |
N3 |
C12 |
C11 |
356.1 |
59.3 |
C9 |
N3 |
C12 |
H121 |
116.1 |
179.3 |
C9 |
N3 |
C12 |
H122 |
236.1 |
299.3 |
N4 |
C10 |
C9 |
N3 |
56.8 |
58.4 |
C10 |
C9 |
N3 |
H91C |
240.4 |
240.1 |
C10 |
C9 |
N3 |
H92C |
119.6 |
120.0 |
N3 |
C9 |
C10 |
H101 |
297.1 |
298.4 |
N3 |
C9 |
C10 |
H102 |
176.5 |
178.3 |
H91C |
C9 |
N3 |
H92C |
239.2 |
239.9 |
C8 |
N3 |
C12 |
C9 |
178.6 |
123.9 |
C12 |
N3 |
C8 |
C4 |
2.0 |
92.7 |
C12 |
N3 |
C8 |
N9 |
183.3 |
272.7 |
C12 |
N3 |
C9 |
C10 |
307.3 |
300.7 |
C12 |
N3 |
C9 |
H91C |
66.9 |
60.6 |
C12 |
N3 |
C9 |
H92C |
187.7 |
180.7 |
N4 |
C11 |
C12 |
N3 |
53.0 |
301.6 |
C11 |
C12 |
N3 |
H121 |
240.0 |
240.0 |
C11 |
C12 |
N3 |
H122 |
120.0 |
120.0 |
N3 |
C12 |
C11 |
H111 |
293.4 |
181.6 |
N3 |
C12 |
C11 |
H112 |
172.7 |
61.6 |
H121 |
C12 |
N3 |
H122 |
240.1 |
240.0 |
C5 |
C4 |
C3 |
C17 |
359.7 |
0.0 |
C3 |
C4 |
C5 |
C8 |
180.5 |
180.0 |
N3 |
C8 |
C4 |
C5 |
1.3 |
360.0 |
C5 |
C4 |
C8 |
N9 |
180.0 |
179.9 |
C4 |
C5 |
C6 |
C7 |
359.9 |
360.0 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.1 |
C4 |
C5 |
C6 |
H6 |
179.9 |
180.0 |
C2 |
N9 |
C8 |
C4 |
0.5 |
0.0 |
C8 |
C4 |
C3 |
C17 |
180.1 |
180.0 |
C3 |
C4 |
C8 |
C5 |
179.5 |
180.0 |
C4 |
C8 |
N3 |
C9 |
180.5 |
216.6 |
C4 |
C8 |
N3 |
C12 |
2.0 |
92.7 |
N3 |
C8 |
C4 |
N9 |
181.3 |
180.0 |
C8 |
C4 |
C5 |
C6 |
179.8 |
180.0 |
C8 |
C4 |
C5 |
H5 |
359.7 |
360.0 |
N3 |
C9 |
C10 |
N4 |
56.8 |
58.4 |
C11 |
N4 |
C10 |
C13 |
179.6 |
123.8 |
C10 |
N4 |
C11 |
C12 |
311.1 |
59.4 |
C10 |
N4 |
C11 |
H111 |
70.7 |
179.3 |
C10 |
N4 |
C11 |
H112 |
191.4 |
299.4 |
C10 |
N4 |
C13 |
H131 |
180.0 |
60.0 |
C10 |
N4 |
C13 |
H132 |
300.0 |
180.0 |
C10 |
N4 |
C13 |
H133 |
60.0 |
300.0 |
N4 |
C10 |
C9 |
H91C |
297.2 |
298.5 |
N4 |
C10 |
C9 |
H92C |
176.4 |
178.4 |
C9 |
C10 |
N4 |
H101 |
240.3 |
240.0 |
C9 |
C10 |
N4 |
H102 |
119.7 |
119.9 |
H101 |
C10 |
N4 |
H102 |
239.3 |
239.9 |
N3 |
C12 |
C11 |
N4 |
53.0 |
301.6 |
C10 |
N4 |
C11 |
C13 |
180.4 |
236.2 |
C11 |
N4 |
C10 |
C9 |
353.0 |
300.6 |
C11 |
N4 |
C10 |
H101 |
112.7 |
60.6 |
C11 |
N4 |
C10 |
H102 |
233.4 |
180.7 |
C11 |
N4 |
C13 |
H131 |
0.4 |
296.3 |
C11 |
N4 |
C13 |
H132 |
120.3 |
56.2 |
C11 |
N4 |
C13 |
H133 |
240.4 |
176.2 |
N4 |
C11 |
C12 |
H121 |
293.0 |
181.6 |
N4 |
C11 |
C12 |
H122 |
173.0 |
61.6 |
C12 |
C11 |
N4 |
H111 |
240.4 |
240.1 |
C12 |
C11 |
N4 |
H112 |
119.6 |
120.0 |
H111 |
C11 |
N4 |
H112 |
239.3 |
239.9 |
C10 |
N4 |
C13 |
C11 |
179.6 |
123.7 |
C13 |
N4 |
C10 |
C9 |
173.4 |
176.8 |
C13 |
N4 |
C10 |
H101 |
293.1 |
296.8 |
C13 |
N4 |
C10 |
H102 |
53.7 |
56.9 |
C13 |
N4 |
C11 |
C12 |
130.7 |
183.2 |
C13 |
N4 |
C11 |
H111 |
250.3 |
303.1 |
C13 |
N4 |
C11 |
H112 |
11.1 |
63.2 |
H131 |
C13 |
N4 |
H132 |
240.0 |
240.1 |
H131 |
C13 |
N4 |
H133 |
120.0 |
120.1 |
H132 |
C13 |
N4 |
H133 |
240.0 |
240.0 |
C6 |
C5 |
C4 |
C8 |
179.8 |
180.0 |
C4 |
C5 |
C6 |
H5 |
180.0 |
179.9 |
C5 |
C6 |
C7 |
C17 |
360.0 |
0.0 |
C7 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C5 |
C6 |
C7 |
H7 |
180.0 |
180.0 |
C3 |
C17 |
C7 |
C6 |
360.0 |
0.0 |
C7 |
C6 |
C5 |
H5 |
179.9 |
180.0 |
C5 |
C6 |
C7 |
H6 |
180.0 |
180.0 |
C6 |
C7 |
C17 |
H17 |
179.9 |
180.0 |
C17 |
C7 |
C6 |
H7 |
180.0 |
180.0 |
C3 |
C17 |
C7 |
H17 |
180.0 |
180.0 |
C17 |
C7 |
C6 |
H6 |
180.0 |
180.0 |
C6 |
C7 |
C17 |
H7 |
180.0 |
180.0 |
C8 |
N9 |
C2 |
H2 |
179.9 |
180.0 |
N9 |
C8 |
N3 |
C9 |
1.9 |
36.6 |
N9 |
C8 |
N3 |
C12 |
183.3 |
272.7 |
N3 |
C8 |
N9 |
C4 |
178.8 |
180.0 |
C10 |
C9 |
N3 |
C12 |
307.3 |
300.7 |
N3 |
C9 |
C10 |
H91C |
119.6 |
119.9 |
N3 |
C9 |
C10 |
H92C |
240.4 |
240.0 |
C9 |
C10 |
N4 |
C11 |
353.0 |
300.6 |
C9 |
C10 |
N4 |
C13 |
173.4 |
176.8 |
N4 |
C10 |
C9 |
H101 |
119.7 |
120.0 |
N4 |
C10 |
C9 |
H102 |
240.3 |
240.1 |
H91C |
C9 |
C10 |
H92C |
120.8 |
120.1 |
H101 |
C10 |
C9 |
H102 |
120.6 |
120.0 |
N3 |
C12 |
C11 |
H121 |
120.0 |
120.0 |
N3 |
C12 |
C11 |
H122 |
240.0 |
240.0 |
C12 |
C11 |
N4 |
C13 |
130.7 |
183.2 |
N4 |
C11 |
C12 |
H111 |
119.6 |
120.0 |
N4 |
C11 |
C12 |
H112 |
240.4 |
240.0 |
H121 |
C12 |
C11 |
H122 |
120.0 |
120.0 |
H111 |
C11 |
C12 |
H112 |
120.7 |
120.1 |
H2 |
C2 |
N1 |
C3 |
179.6 |
180.0 |
N1 |
C2 |
H2 |
N9 |
180.0 |
180.0 |
H2 |
C2 |
N9 |
C8 |
179.9 |
180.0 |
C3 |
C17 |
H17 |
C7 |
180.0 |
180.0 |
H17 |
C17 |
C7 |
H7 |
359.9 |
0.0 |
H91C |
C9 |
N3 |
C12 |
66.9 |
60.6 |
N3 |
C9 |
H91C |
C10 |
242.2 |
240.1 |
N3 |
C9 |
H91C |
H92C |
121.1 |
120.1 |
C10 |
C9 |
H91C |
H92C |
238.9 |
240.0 |
H91C |
C9 |
C10 |
H101 |
177.5 |
178.4 |
H91C |
C9 |
C10 |
H102 |
56.9 |
58.4 |
H92C |
C9 |
N3 |
C12 |
187.7 |
180.7 |
N3 |
C9 |
H92C |
C10 |
117.8 |
119.9 |
N3 |
C9 |
H92C |
H91C |
238.9 |
239.9 |
C10 |
C9 |
H92C |
H91C |
121.1 |
120.0 |
H92C |
C9 |
C10 |
H101 |
56.7 |
58.4 |
H92C |
C9 |
C10 |
H102 |
296.1 |
298.3 |
N3 |
C12 |
H121 |
C11 |
240.0 |
240.1 |
N3 |
C12 |
H121 |
H122 |
119.9 |
120.1 |
C11 |
C12 |
H121 |
H122 |
240.0 |
240.0 |
H121 |
C12 |
C11 |
H111 |
173.4 |
61.6 |
H121 |
C12 |
C11 |
H112 |
52.7 |
301.5 |
N3 |
C12 |
H122 |
C11 |
120.1 |
119.9 |
N3 |
C12 |
H122 |
H121 |
240.0 |
239.9 |
C11 |
C12 |
H122 |
H121 |
120.0 |
120.0 |
H122 |
C12 |
C11 |
H111 |
53.4 |
301.6 |
H122 |
C12 |
C11 |
H112 |
292.7 |
181.6 |
H5 |
C5 |
C4 |
C8 |
359.7 |
360.0 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.1 |
H5 |
C5 |
C6 |
C7 |
179.9 |
180.0 |
H5 |
C5 |
C6 |
H6 |
359.9 |
0.1 |
H101 |
C10 |
N4 |
C11 |
112.7 |
60.6 |
H101 |
C10 |
N4 |
C13 |
293.1 |
296.8 |
N4 |
C10 |
H101 |
C9 |
241.9 |
240.1 |
N4 |
C10 |
H101 |
H102 |
121.0 |
120.1 |
H101 |
C10 |
C9 |
H91C |
177.5 |
178.4 |
H101 |
C10 |
C9 |
H92C |
56.7 |
58.4 |
C9 |
C10 |
H101 |
H102 |
239.1 |
240.0 |
H102 |
C10 |
N4 |
C11 |
233.4 |
180.7 |
H102 |
C10 |
N4 |
C13 |
53.7 |
56.9 |
N4 |
C10 |
H102 |
C9 |
118.1 |
119.8 |
N4 |
C10 |
H102 |
H101 |
239.0 |
239.8 |
H102 |
C10 |
C9 |
H91C |
56.9 |
58.4 |
H102 |
C10 |
C9 |
H92C |
296.1 |
298.3 |
C9 |
C10 |
H102 |
H101 |
120.9 |
120.0 |
H111 |
C11 |
N4 |
C13 |
250.3 |
303.1 |
N4 |
C11 |
H111 |
C12 |
242.2 |
240.1 |
N4 |
C11 |
H111 |
H112 |
121.1 |
120.1 |
H111 |
C11 |
C12 |
H121 |
173.4 |
61.6 |
H111 |
C11 |
C12 |
H122 |
53.4 |
301.6 |
C12 |
C11 |
H111 |
H112 |
238.9 |
240.0 |
H112 |
C11 |
N4 |
C13 |
11.1 |
63.2 |
N4 |
C11 |
H112 |
C12 |
117.8 |
119.9 |
N4 |
C11 |
H112 |
H111 |
238.9 |
239.9 |
H112 |
C11 |
C12 |
H121 |
52.7 |
301.5 |
H112 |
C11 |
C12 |
H122 |
292.7 |
181.6 |
C12 |
C11 |
H112 |
H111 |
121.1 |
120.0 |
N4 |
C13 |
H131 |
H132 |
120.0 |
119.9 |
N4 |
C13 |
H131 |
H133 |
240.0 |
240.0 |
H132 |
C13 |
H131 |
H133 |
120.0 |
120.0 |
N4 |
C13 |
H132 |
H131 |
240.0 |
240.0 |
N4 |
C13 |
H132 |
H133 |
120.0 |
120.0 |
H131 |
C13 |
H132 |
H133 |
240.0 |
240.0 |
N4 |
C13 |
H133 |
H131 |
120.0 |
120.0 |
N4 |
C13 |
H133 |
H132 |
240.0 |
240.0 |
H131 |
C13 |
H133 |
H132 |
120.0 |
120.0 |
C5 |
C6 |
H6 |
C7 |
180.0 |
180.0 |
H6 |
C6 |
C5 |
H5 |
359.9 |
0.1 |
H6 |
C6 |
C7 |
C17 |
180.0 |
180.0 |
H6 |
C6 |
C7 |
H7 |
0.0 |
360.0 |
C6 |
C7 |
H7 |
C17 |
180.0 |
180.0 |
H7 |
C7 |
C6 |
H6 |
0.0 |
360.0 |
H7 |
C7 |
C17 |
H17 |
359.9 |
0.0 |