PDB Chemical Component 129
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 129
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
P |
O1P |
1.539 |
1.480 |
P |
O2P |
1.536 |
1.611 |
P |
O3P |
1.538 |
1.609 |
P |
C4 |
1.800 |
1.823 |
O2P |
HOP2 |
0.950 |
0.967 |
O3P |
HOP3 |
0.950 |
0.967 |
C4 |
C3 |
1.544 |
1.529 |
C4 |
H41 |
1.115 |
1.090 |
C4 |
H42 |
1.116 |
1.089 |
C3 |
N2 |
1.471 |
1.465 |
C3 |
H31 |
1.115 |
1.091 |
C3 |
H32 |
1.114 |
1.089 |
N2 |
C1 |
1.307 |
1.347 |
N2 |
O2 |
1.401 |
1.415 |
C1 |
O1 |
1.209 |
1.212 |
C1 |
H1 |
1.103 |
1.080 |
O2 |
HO2 |
0.950 |
0.967 |
Bond Angles for 129
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1P |
P |
O2P |
109.1 |
109.4 |
O1P |
P |
O3P |
109.7 |
109.5 |
O1P |
P |
C4 |
109.7 |
109.5 |
O2P |
P |
O3P |
113.5 |
109.4 |
O2P |
P |
C4 |
107.5 |
109.4 |
P |
O2P |
HOP2 |
109.1 |
106.8 |
O3P |
P |
C4 |
107.2 |
109.5 |
P |
O3P |
HOP3 |
109.7 |
106.8 |
P |
C4 |
C3 |
111.3 |
109.4 |
P |
C4 |
H41 |
111.5 |
109.5 |
P |
C4 |
H42 |
111.5 |
109.5 |
C3 |
C4 |
H41 |
111.6 |
109.5 |
C3 |
C4 |
H42 |
111.5 |
109.5 |
C4 |
C3 |
N2 |
104.7 |
109.4 |
C4 |
C3 |
H31 |
114.0 |
109.4 |
C4 |
C3 |
H32 |
114.0 |
109.5 |
H41 |
C4 |
H42 |
98.8 |
109.4 |
N2 |
C3 |
H31 |
114.0 |
109.5 |
N2 |
C3 |
H32 |
114.0 |
109.5 |
C3 |
N2 |
C1 |
127.2 |
120.0 |
C3 |
N2 |
O2 |
115.9 |
120.0 |
H31 |
C3 |
H32 |
96.5 |
109.5 |
C1 |
N2 |
O2 |
114.1 |
120.0 |
N2 |
C1 |
O1 |
120.6 |
120.0 |
N2 |
C1 |
H1 |
123.6 |
119.9 |
N2 |
O2 |
HO2 |
115.9 |
106.8 |
O1 |
C1 |
H1 |
115.8 |
120.0 |
Torsion Angles for 129
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2P |
P |
O1P |
O3P |
125.0 |
119.9 |
O2P |
P |
O1P |
C4 |
242.5 |
240.1 |
O1P |
P |
O2P |
HOP2 |
180.0 |
300.0 |
O3P |
P |
O1P |
C4 |
117.5 |
120.1 |
O1P |
P |
O3P |
HOP3 |
180.1 |
179.9 |
O1P |
P |
C4 |
C3 |
154.3 |
60.0 |
O1P |
P |
C4 |
H41 |
279.7 |
300.1 |
O1P |
P |
C4 |
H42 |
29.1 |
180.1 |
O1P |
P |
O2P |
O3P |
237.3 |
240.0 |
O1P |
P |
O2P |
C4 |
118.9 |
120.0 |
O3P |
P |
O2P |
C4 |
241.6 |
240.0 |
O2P |
P |
O3P |
HOP3 |
57.7 |
60.0 |
O2P |
P |
C4 |
C3 |
272.9 |
180.0 |
O2P |
P |
C4 |
H41 |
38.2 |
60.0 |
O2P |
P |
C4 |
H42 |
147.6 |
300.0 |
O1P |
P |
O3P |
O2P |
122.4 |
119.9 |
O1P |
P |
O3P |
C4 |
240.9 |
239.9 |
O2P |
P |
O3P |
C4 |
118.6 |
120.0 |
O3P |
P |
O2P |
HOP2 |
302.7 |
60.0 |
O3P |
P |
C4 |
C3 |
35.3 |
299.9 |
O3P |
P |
C4 |
H41 |
160.6 |
180.0 |
O3P |
P |
C4 |
H42 |
270.0 |
60.0 |
O1P |
P |
C4 |
O2P |
241.5 |
240.1 |
O1P |
P |
C4 |
O3P |
119.1 |
120.1 |
O2P |
P |
C4 |
O3P |
237.6 |
240.0 |
C4 |
P |
O2P |
HOP2 |
61.1 |
180.0 |
C4 |
P |
O3P |
HOP3 |
299.1 |
300.0 |
C3 |
C4 |
P |
H41 |
234.7 |
120.0 |
C3 |
C4 |
P |
H42 |
125.3 |
239.9 |
P |
C4 |
C3 |
N2 |
192.6 |
180.0 |
P |
C4 |
C3 |
H31 |
317.8 |
60.0 |
P |
C4 |
C3 |
H32 |
67.3 |
300.0 |
H41 |
C4 |
P |
H42 |
250.6 |
120.0 |
HOP2 |
O2P |
P |
O3P |
302.7 |
60.0 |
HOP2 |
O2P |
P |
C4 |
61.1 |
180.0 |
HOP3 |
O3P |
P |
C4 |
299.1 |
300.0 |
P |
C4 |
C3 |
H41 |
125.3 |
240.1 |
P |
C4 |
C3 |
H42 |
234.7 |
120.1 |
H41 |
C4 |
C3 |
H42 |
109.4 |
240.0 |
N2 |
C3 |
C4 |
H31 |
234.8 |
119.9 |
N2 |
C3 |
C4 |
H32 |
125.3 |
239.9 |
C4 |
C3 |
N2 |
C1 |
120.5 |
90.1 |
C4 |
C3 |
N2 |
O2 |
320.8 |
270.0 |
H31 |
C3 |
C4 |
H32 |
250.5 |
120.0 |
P |
C4 |
H41 |
C3 |
234.8 |
119.9 |
P |
C4 |
H41 |
H42 |
117.4 |
240.0 |
C3 |
C4 |
H41 |
H42 |
242.6 |
120.1 |
H41 |
C4 |
C3 |
N2 |
67.3 |
299.9 |
H41 |
C4 |
C3 |
H31 |
192.5 |
180.0 |
H41 |
C4 |
C3 |
H32 |
302.0 |
60.0 |
P |
C4 |
H42 |
C3 |
125.2 |
240.0 |
P |
C4 |
H42 |
H41 |
242.6 |
120.0 |
C3 |
C4 |
H42 |
H41 |
117.4 |
240.0 |
H42 |
C4 |
C3 |
N2 |
317.9 |
59.9 |
H42 |
C4 |
C3 |
H31 |
83.1 |
300.0 |
H42 |
C4 |
C3 |
H32 |
192.6 |
180.0 |
N2 |
C3 |
C4 |
H41 |
67.3 |
299.9 |
N2 |
C3 |
C4 |
H42 |
317.9 |
59.9 |
C4 |
C3 |
N2 |
H31 |
125.2 |
240.1 |
C4 |
C3 |
N2 |
H32 |
234.7 |
120.1 |
H31 |
C3 |
N2 |
H32 |
109.5 |
240.0 |
C1 |
N2 |
C3 |
O2 |
159.7 |
180.1 |
C3 |
N2 |
C1 |
O1 |
199.6 |
179.9 |
C3 |
N2 |
C1 |
H1 |
19.6 |
360.0 |
C3 |
N2 |
O2 |
HO2 |
180.0 |
180.0 |
H31 |
C3 |
C4 |
H41 |
192.5 |
180.0 |
H31 |
C3 |
C4 |
H42 |
83.1 |
300.0 |
C4 |
C3 |
H31 |
N2 |
239.9 |
119.9 |
C4 |
C3 |
H31 |
H32 |
120.0 |
240.0 |
N2 |
C3 |
H31 |
H32 |
240.1 |
120.1 |
H31 |
C3 |
N2 |
C1 |
355.3 |
210.0 |
H31 |
C3 |
N2 |
O2 |
195.6 |
29.9 |
H32 |
C3 |
C4 |
H41 |
302.0 |
60.0 |
H32 |
C3 |
C4 |
H42 |
192.6 |
180.0 |
C4 |
C3 |
H32 |
N2 |
120.2 |
240.0 |
C4 |
C3 |
H32 |
H31 |
240.1 |
120.0 |
N2 |
C3 |
H32 |
H31 |
119.9 |
240.0 |
H32 |
C3 |
N2 |
C1 |
245.8 |
330.0 |
H32 |
C3 |
N2 |
O2 |
86.1 |
149.9 |
C1 |
N2 |
C3 |
H31 |
355.3 |
210.0 |
C1 |
N2 |
C3 |
H32 |
245.8 |
330.0 |
C3 |
N2 |
C1 |
O2 |
200.0 |
179.9 |
C1 |
N2 |
O2 |
HO2 |
17.6 |
360.0 |
O1 |
C1 |
N2 |
H1 |
180.1 |
180.0 |
O2 |
N2 |
C3 |
H31 |
195.6 |
29.9 |
O2 |
N2 |
C3 |
H32 |
86.1 |
149.9 |
C3 |
N2 |
O2 |
C1 |
162.4 |
180.1 |
O2 |
N2 |
C1 |
O1 |
359.7 |
0.0 |
O2 |
N2 |
C1 |
H1 |
179.6 |
180.1 |
O1 |
C1 |
N2 |
O2 |
359.7 |
0.0 |
N2 |
C1 |
O1 |
H1 |
179.9 |
180.0 |
H1 |
C1 |
N2 |
O2 |
179.6 |
180.1 |
N2 |
C1 |
H1 |
O1 |
180.1 |
180.0 |