PDB Chemical Component 127

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 127

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.531 1.479
P OP2 1.479 1.609
P OP3 1.609 1.609
P O5' 1.578 1.610
OP2 HOP2 0.951 0.967
OP3 HOP3 0.951 0.966
O5' C5' 1.409 1.428
C5' C4' 1.501 1.529
C5' H5' 1.114 1.090
C5' H5'' 1.115 1.090
C4' O4' 1.459 1.443
C4' C3' 1.530 1.544
C4' H4' 1.115 1.090
O4' C1' 1.415 1.443
C3' O3' 1.436 1.429
C3' C2' 1.519 1.546
C3' H3' 1.115 1.091
O3' HO3' 0.950 0.966
C2' O2' 1.417 1.429
C2' C1' 1.531 1.544
C2' H2' 1.116 1.090
O2' CA' 1.444 1.428
C1' N1 1.483 1.465
C1' H1' 1.115 1.090
N1 C2 1.373 1.345
N1 C6 1.386 1.369
C2 O2 1.227 1.215
C2 N3 1.378 1.345
N3 C4 1.385 1.349
N3 H3 1.020 0.971
C4 O4 1.220 1.217
C4 C5 1.450 1.415
C5 C5M 1.508 1.507
C5 C6 1.345 1.350
C5M H71 1.114 1.089
C5M H72 1.116 1.091
C5M H73 1.115 1.091
C6 H6 1.102 1.080
CA' CB' 1.458 1.530
CA' HA'1 1.115 1.090
CA' HA'2 1.116 1.089
CB' OC' 1.439 1.429
CB' HB'1 1.114 1.090
CB' HB'2 1.115 1.090
OC' ND' 1.506 1.463
ND' HD'1 1.020 1.009
ND' HD'2 1.020 1.008

Bond Angles for 127

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.2 109.5
OP1 P OP3 103.5 109.5
OP1 P O5' 107.6 109.5
OP2 P OP3 112.7 109.4
OP2 P O5' 106.9 109.5
P OP2 HOP2 119.2 106.8
OP3 P O5' 106.2 109.5
P OP3 HOP3 103.5 106.8
P O5' C5' 122.1 106.9
O5' C5' C4' 109.2 109.5
O5' C5' H5' 112.3 109.4
O5' C5' H5'' 112.3 109.5
C4' C5' H5' 112.3 109.5
C4' C5' H5'' 112.3 109.4
C5' C4' O4' 110.1 110.4
C5' C4' C3' 115.4 110.5
C5' C4' H4' 103.1 110.3
H5' C5' H5'' 98.2 109.5
O4' C4' C3' 102.9 104.8
O4' C4' H4' 115.5 110.3
C4' O4' C1' 109.1 105.3
C3' C4' H4' 110.2 110.3
C4' C3' O3' 114.6 110.6
C4' C3' C2' 100.3 104.1
C4' C3' H3' 112.6 110.5
O4' C1' C2' 107.0 104.9
O4' C1' N1 108.7 110.4
O4' C1' H1' 112.2 110.4
O3' C3' C2' 110.3 110.6
O3' C3' H3' 103.0 110.4
C3' O3' HO3' 114.5 106.8
C2' C3' H3' 116.6 110.6
C3' C2' O2' 110.0 110.5
C3' C2' C1' 100.4 104.0
C3' C2' H2' 115.0 110.5
O2' C2' C1' 109.6 110.8
O2' C2' H2' 106.6 110.4
C2' O2' CA' 116.6 106.9
C1' C2' H2' 115.3 110.4
C2' C1' N1 111.1 110.3
C2' C1' H1' 109.8 110.4
O2' CA' CB' 111.7 109.5
O2' CA' HA'1 111.4 109.5
O2' CA' HA'2 111.4 109.5
N1 C1' H1' 108.1 110.3
C1' N1 C2 116.4 119.7
C1' N1 C6 122.0 119.7
C2 N1 C6 121.5 120.6
N1 C2 O2 122.8 119.5
N1 C2 N3 114.6 120.9
N1 C6 C5 123.5 119.7
N1 C6 H6 119.8 120.1
O2 C2 N3 122.6 119.6
C2 N3 C4 127.1 120.3
C2 N3 H3 116.2 119.9
C4 N3 H3 116.7 119.8
N3 C4 O4 119.8 120.3
N3 C4 C5 115.5 119.3
O4 C4 C5 124.7 120.3
C4 C5 C5M 119.1 120.4
C4 C5 C6 117.7 119.1
C5M C5 C6 123.2 120.5
C5 C5M H71 119.1 109.5
C5 C5M H72 108.7 109.5
C5 C5M H73 108.7 109.4
C5 C6 H6 116.6 120.2
H71 C5M H72 108.8 109.5
H71 C5M H73 108.8 109.5
H72 C5M H73 101.2 109.4
CB' CA' HA'1 111.4 109.4
CB' CA' HA'2 111.4 109.5
CA' CB' OC' 113.1 109.5
CA' CB' HB'1 110.9 109.5
CA' CB' HB'2 110.8 109.4
HA'1 CA' HA'2 98.9 109.5
OC' CB' HB'1 110.9 109.5
OC' CB' HB'2 110.8 109.5
CB' OC' ND' 111.7 106.8
HB'1 CB' HB'2 99.4 109.4
OC' ND' HD'1 111.8 106.7
OC' ND' HD'2 111.4 106.8
HD'1 ND' HD'2 111.4 106.7

Torsion Angles for 127

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 126.0 120.0
OP2 P OP1 O5' 238.2 240.0
OP1 P OP2 HOP2 180.0 300.1
OP3 P OP1 O5' 112.1 120.0
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' C5' 50.8 60.0
OP1 P OP2 OP3 238.5 240.0
OP1 P OP2 O5' 122.2 120.0
OP3 P OP2 O5' 243.7 240.0
OP2 P OP3 HOP3 49.9 60.0
OP2 P O5' C5' 180.0 180.0
OP1 P OP3 OP2 130.1 120.0
OP1 P OP3 O5' 246.8 240.0
OP2 P OP3 O5' 116.7 120.0
OP3 P OP2 HOP2 301.5 60.1
OP3 P O5' C5' 300.5 300.0
OP1 P O5' OP2 230.8 240.0
OP1 P O5' OP3 110.3 120.0
OP2 P O5' OP3 239.5 240.0
O5' P OP2 HOP2 57.8 180.0
O5' P OP3 HOP3 293.2 300.0
P O5' C5' C4' 170.8 180.0
P O5' C5' H5' 296.1 60.0
P O5' C5' H5'' 45.6 300.0
HOP2 OP2 P OP3 301.5 60.1
HOP2 OP2 P O5' 57.8 180.0
HOP3 OP3 P O5' 293.2 300.0
C4' C5' O5' H5' 234.8 120.0
C4' C5' O5' H5'' 125.2 240.1
O5' C5' C4' O4' 290.5 61.4
O5' C5' C4' C3' 46.4 176.9
O5' C5' C4' H4' 166.7 299.2
H5' C5' O5' H5'' 250.5 120.0
O5' C5' C4' H5' 125.2 240.0
O5' C5' C4' H5'' 234.8 120.0
H5' C5' C4' H5'' 109.5 240.0
O4' C4' C5' C3' 244.1 244.5
O4' C4' C5' H4' 123.8 122.2
C5' C4' O4' C1' 147.6 159.5
C3' C4' C5' H4' 239.7 237.8
C5' C4' C3' O3' 80.2 98.3
C5' C4' C3' C2' 198.3 217.0
C5' C4' C3' H3' 323.0 335.8
O5' C5' H5' C4' 236.5 120.0
O5' C5' H5' H5'' 118.3 240.0
C4' C5' H5' H5'' 241.8 120.0
H5' C5' C4' O4' 165.3 181.4
H5' C5' C4' C3' 281.2 296.9
H5' C5' C4' H4' 41.5 59.2
O5' C5' H5'' C4' 123.5 240.0
O5' C5' H5'' H5' 241.7 119.9
C4' C5' H5'' H5' 118.3 240.0
H5'' C5' C4' O4' 55.8 301.5
H5'' C5' C4' C3' 171.7 57.0
H5'' C5' C4' H4' 291.9 179.2
O4' C4' C5' H5' 165.3 181.4
O4' C4' C5' H5'' 55.8 301.5
C5' C4' O4' C3' 123.6 119.0
C5' C4' O4' H4' 243.7 237.8
C3' C4' O4' H4' 120.2 118.7
O4' C4' C3' O3' 200.1 217.3
O4' C4' C3' C2' 318.3 336.0
O4' C4' C3' H3' 82.9 94.7
C4' O4' C1' C2' 3.6 319.6
C4' O4' C1' N1 243.6 200.7
C4' O4' C1' H1' 124.0 78.5
C3' C4' C5' H5' 281.2 296.9
C3' C4' C5' H5'' 171.7 57.0
C5' C4' C3' O4' 240.0 241.0
C5' C4' C3' H4' 116.3 122.2
O4' C4' C3' H4' 236.3 241.2
C3' C4' O4' C1' 24.0 40.4
O3' C3' C4' C2' 241.8 241.3
O3' C3' C4' H3' 117.2 122.5
C4' C3' O3' HO3' 180.0 298.6
C2' C3' C4' H3' 235.4 241.3
C4' C3' C2' O2' 287.3 241.1
C4' C3' C2' C1' 42.7 0.1
C4' C3' C2' H2' 167.0 118.6
H4' C4' C5' H5' 41.5 59.2
H4' C4' C5' H5'' 291.9 179.2
C5' C4' H4' O4' 120.2 122.3
C5' C4' H4' C3' 236.2 237.6
O4' C4' H4' C3' 116.1 115.3
H4' C4' O4' C1' 263.9 281.7
H4' C4' C3' O3' 323.9 336.0
H4' C4' C3' C2' 82.0 94.8
H4' C4' C3' H3' 206.7 213.5
C1' O4' C4' C3' 24.0 40.4
C1' O4' C4' H4' 263.9 281.7
C3' C2' C1' O4' 330.3 23.8
O2' C2' C1' O4' 86.0 142.6
O4' C1' C2' H2' 206.2 265.3
C2' C1' O4' N1 120.0 118.9
C2' C1' O4' H1' 239.5 241.1
N1 C1' O4' H1' 119.5 122.2
O4' C1' N1 C2 202.2 57.0
O4' C1' N1 C6 22.0 237.1
O3' C3' C4' H4' 323.9 336.0
C4' C3' O3' C2' 112.3 114.7
C4' C3' O3' H3' 237.4 237.4
C2' C3' O3' H3' 125.1 122.7
O3' C3' C2' O2' 48.5 359.8
O3' C3' C2' C1' 163.9 118.8
O3' C3' C2' H2' 288.3 237.3
C2' C3' C4' H4' 82.0 94.8
C4' C3' C2' O3' 238.8 241.3
C4' C3' C2' H3' 121.9 118.7
O4' C1' C2' C3' 330.3 23.8
O3' C3' C2' H3' 243.1 237.4
C2' C3' O3' HO3' 67.7 183.9
O2' C2' C3' C1' 244.6 241.0
O2' C2' C3' H2' 120.2 122.5
C3' C2' O2' CA' 189.9 268.6
C1' C2' C3' H2' 235.6 241.5
C3' C2' C1' N1 88.8 142.8
C3' C2' C1' H1' 208.3 264.9
H3' C3' C4' H4' 206.7 213.5
C4' C3' H3' O3' 123.9 122.6
C4' C3' H3' C2' 244.8 245.3
O3' C3' H3' C2' 120.9 122.7
H3' C3' O3' HO3' 302.6 61.2
H3' C3' C2' O2' 165.4 122.4
H3' C3' C2' C1' 280.8 241.4
H3' C3' C2' H2' 45.2 359.9
HO3' O3' C3' C2' 67.7 183.9
HO3' O3' C3' H3' 302.6 61.2
O4' C1' C2' O2' 86.0 142.6
O2' C2' C3' H3' 165.4 122.4
C3' C2' O2' C1' 109.4 114.7
C3' C2' O2' H2' 234.8 237.4
C1' C2' O2' H2' 125.4 122.7
O2' C2' C1' N1 204.5 261.5
O2' C2' C1' H1' 324.0 23.7
C2' O2' CA' CB' 186.5 180.0
C2' O2' CA' HA'1 311.8 300.0
C2' O2' CA' HA'2 61.2 60.0
O4' C1' C2' N1 241.6 241.1
O4' C1' C2' H1' 122.0 118.9
C1' C2' C3' H3' 280.8 241.4
C3' C2' C1' O2' 244.3 241.3
C3' C2' C1' H2' 124.1 118.6
O2' C2' C1' H2' 239.8 237.3
C1' C2' O2' CA' 80.5 153.8
N1 C1' C2' H1' 240.5 237.8
C2' C1' N1 C2 84.8 301.5
C2' C1' N1 C6 264.6 121.6
H2' C2' C3' H3' 45.2 359.9
C3' C2' H2' O2' 122.1 122.6
C3' C2' H2' C1' 243.9 245.5
O2' C2' H2' C1' 121.8 122.9
H2' C2' O2' CA' 315.1 31.2
H2' C2' C1' N1 324.6 24.2
H2' C2' C1' H1' 84.2 146.3
CA' O2' C2' C1' 80.5 153.8
CA' O2' C2' H2' 315.1 31.2
CB' CA' O2' HA'1 234.7 240.0
CB' CA' O2' HA'2 125.3 120.0
O2' CA' CB' OC' 283.5 60.0
O2' CA' CB' HB'1 48.8 180.0
O2' CA' CB' HB'2 158.3 299.9
HA'1 CA' O2' HA'2 250.6 240.0
O4' C1' N1 C2' 117.4 115.5
O4' C1' N1 H1' 238.0 237.7
N1 C1' C2' H2' 324.6 24.2
C2' C1' N1 H1' 120.5 122.2
C2 N1 C1' C6 180.2 179.9
C1' N1 C2 O2 357.2 0.1
C1' N1 C2 N3 178.1 180.0
C1' N1 C6 C5 181.0 179.9
C1' N1 C6 H6 1.0 359.9
O4' C1' H1' C2' 241.2 244.5
O4' C1' H1' N1 119.8 122.3
H1' C1' C2' H2' 84.2 146.3
C2' C1' H1' N1 238.7 237.8
H1' C1' N1 C2 324.3 179.3
H1' C1' N1 C6 144.1 359.4
C2 N1 C1' H1' 324.3 179.3
C1' N1 C2 C6 179.8 180.1
C2 N1 C6 C5 0.8 0.0
C2 N1 C6 H6 180.8 180.0
O2 C2 N1 N3 179.1 180.1
N1 C2 N3 C4 1.0 359.8
N1 C2 N3 H3 181.0 180.1
C6 N1 C1' H1' 144.1 359.4
C1' N1 C6 C2 180.2 179.9
C6 N1 C2 O2 177.4 180.0
C6 N1 C2 N3 358.3 359.9
C4 C5 C6 N1 0.8 0.3
C5M C5 C6 N1 180.8 179.9
C5 C6 N1 H6 180.0 180.0
O2 C2 N1 C6 177.4 180.0
N1 C2 O2 N3 181.0 179.9
O2 C2 N3 C4 182.0 179.7
O2 C2 N3 H3 1.9 359.9
N3 C2 N1 C6 358.3 359.9
N1 C2 N3 O2 179.1 180.1
C4 N3 C2 H3 180.0 179.8
C2 N3 C4 O4 181.9 180.0
C2 N3 C4 C5 0.5 0.5
C2 N3 C4 H3 180.0 180.2
O4 C4 N3 C5 181.4 179.5
N3 C4 C5 C5M 178.6 179.8
N3 C4 C5 C6 358.6 359.5
C2 N3 H3 C4 180.0 179.8
H3 N3 C4 O4 1.9 359.7
H3 N3 C4 C5 180.5 180.3
O4 C4 N3 H3 1.9 359.7
N3 C4 O4 C5 178.4 180.5
O4 C4 C5 C5M 357.1 0.3
O4 C4 C5 C6 177.1 180.0
N1 C6 C5 C4 0.8 0.3
C5 C4 N3 H3 180.5 180.3
N3 C4 C5 O4 181.5 179.5
C5M C5 C4 C6 180.0 180.4
C4 C5 C5M H71 180.0 359.6
C4 C5 C5M H72 305.3 119.7
C4 C5 C5M H73 54.7 239.6
C4 C5 C6 H6 180.8 180.3
N1 C6 C5 C5M 180.8 179.9
C4 C5 C5M C6 180.0 179.6
C5M C5 C6 H6 0.8 359.9
H71 C5M C5 H72 234.7 239.9
H71 C5M C5 H73 125.3 120.0
H72 C5M C5 H73 250.6 240.1
N1 C6 C5 H6 180.0 180.0
C4 C5 C6 C5M 180.0 180.4
C6 C5 C5M H71 0.0 180.0
C6 C5 C5M H72 125.3 300.1
C6 C5 C5M H73 234.7 60.0
H71 C5M C5 C6 0.0 180.0
C5 C5M H71 H72 125.3 120.0
C5 C5M H71 H73 234.7 240.0
H72 C5M H71 H73 109.5 120.0
H72 C5M C5 C6 125.3 300.1
C5 C5M H72 H71 228.9 239.9
C5 C5M H72 H73 114.4 119.9
H71 C5M H72 H73 245.5 240.0
H73 C5M C5 C6 234.7 60.0
C5 C5M H73 H71 131.1 120.0
C5 C5M H73 H72 245.6 240.1
H71 C5M H73 H72 114.5 120.0
N1 C6 H6 C5 180.0 180.0
O2' CA' CB' HA'1 125.3 120.0
O2' CA' CB' HA'2 234.7 240.0
HA'1 CA' CB' HA'2 109.4 120.0
OC' CB' CA' HB'1 234.7 240.0
OC' CB' CA' HB'2 125.2 120.1
CA' CB' OC' ND' 313.8 180.0
HB'1 CB' CA' HB'2 250.5 240.1
O2' CA' HA'1 CB' 234.5 240.0
O2' CA' HA'1 HA'2 117.3 120.0
CB' CA' HA'1 HA'2 242.7 240.0
HA'1 CA' CB' OC' 158.2 300.0
HA'1 CA' CB' HB'1 283.5 60.0
HA'1 CA' CB' HB'2 33.0 180.0
O2' CA' HA'2 CB' 125.5 120.1
O2' CA' HA'2 HA'1 242.7 240.0
CB' CA' HA'2 HA'1 117.3 120.0
HA'2 CA' CB' OC' 48.8 180.0
HA'2 CA' CB' HB'1 174.1 300.0
HA'2 CA' CB' HB'2 283.6 60.0
OC' CB' CA' HA'1 158.2 300.0
OC' CB' CA' HA'2 48.8 180.0
CA' CB' OC' HB'1 125.3 120.0
CA' CB' OC' HB'2 234.8 240.0
HB'1 CB' OC' HB'2 109.5 120.0
CB' OC' ND' HD'1 180.0 180.0
CB' OC' ND' HD'2 54.7 293.8
HB'1 CB' CA' HA'1 283.5 60.0
HB'1 CB' CA' HA'2 174.1 300.0
CA' CB' HB'1 OC' 233.4 240.0
CA' CB' HB'1 HB'2 116.7 119.9
OC' CB' HB'1 HB'2 243.3 239.9
HB'1 CB' OC' ND' 188.5 60.0
HB'2 CB' CA' HA'1 33.0 180.0
HB'2 CB' CA' HA'2 283.6 60.0
CA' CB' HB'2 OC' 126.5 120.0
CA' CB' HB'2 HB'1 243.3 240.0
OC' CB' HB'2 HB'1 116.8 120.0
HB'2 CB' OC' ND' 79.1 300.0
ND' OC' CB' HB'1 188.5 60.0
ND' OC' CB' HB'2 79.1 300.0
HD'1 ND' OC' HD'2 125.3 246.2
OC' ND' HD'1 HD'2 234.7 113.8
OC' ND' HD'2 HD'1 125.5 246.2