PDB Chemical Component 125

Ideal Model

Chemical Description

Name 2'-O-FLUOROETHYL-5-METHYL-URIDINE-5'-MONOPHOSPHATE
Formula C12 H18 F N2 O9 P
Formal charge 0
Molecular weight 384.251 g/mol
Component type RNA LINKING
Nonstandard Parent Id U

Chemical features

Atom count 43
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms OP3 HO3'
Bond count 44
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-O-(2-fluoroethyl)-5-methyluridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-4-(2-fluoroethoxy)-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2OCCF)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2OCCF)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OCCF
InChI descriptor InChI=1S/C12H18FN2O9P/c1-6-4-15(12(18)14-10(6)17)11-9(22-3-2-13)8(16)7(24-11)5-23-25(19,20)21/h4,7-9,11,16H,2-3,5H2,1H3,(H,14,17,18)(H2,19,20,21)/t7-,8-,9-,11-/m1/s1
InChIKey descriptor MUGZYWKCXQUUJO-TURQNECASA-N

Status Information

Last modified 2011-06-04
Created 2001-02-09
Release status REL
Model PDB code 1I0M
Processing site RCSB