PDB Chemical Component 124
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 124
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.409 |
1.402 |
| C1 |
C6 |
1.396 |
1.391 |
| C1 |
C7 |
1.395 |
1.478 |
| C2 |
C3 |
1.383 |
1.364 |
| C2 |
HC2 |
1.078 |
1.080 |
| C3 |
C4 |
1.368 |
1.393 |
| C3 |
HC3 |
1.074 |
1.080 |
| C4 |
C5 |
1.350 |
1.410 |
| C4 |
N3 |
1.311 |
1.375 |
| C5 |
C6 |
1.382 |
1.394 |
| C5 |
C9 |
1.373 |
1.464 |
| C6 |
HC6 |
1.069 |
1.080 |
| C7 |
N1 |
1.319 |
1.332 |
| C7 |
N2 |
1.326 |
1.333 |
| N1 |
HH11 |
1.012 |
0.970 |
| N1 |
HH12 |
0.995 |
0.970 |
| N2 |
HH21 |
1.011 |
0.970 |
| N2 |
HH22 |
0.999 |
0.970 |
| N3 |
C8 |
1.308 |
1.377 |
| N3 |
HN3 |
0.985 |
0.969 |
| C9 |
C8 |
1.375 |
1.356 |
| C9 |
HC9 |
1.079 |
1.080 |
| C8 |
C1' |
1.387 |
1.478 |
| C1' |
C2' |
1.393 |
1.395 |
| C1' |
C6' |
1.397 |
1.400 |
| C2' |
C3' |
1.382 |
1.379 |
| C2' |
HC2' |
1.080 |
1.080 |
| C3' |
C4' |
1.390 |
1.384 |
| C3' |
HC3' |
1.082 |
1.080 |
| C4' |
C5' |
1.407 |
1.382 |
| C4' |
HC4' |
1.081 |
1.080 |
| C5' |
C6' |
1.394 |
1.385 |
| C5' |
HC5' |
1.085 |
1.081 |
| C6' |
O6' |
1.390 |
1.358 |
| O6' |
HO6 |
0.950 |
0.967 |
Bond Angles for 124
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
119.4 |
120.0 |
| C2 |
C1 |
C7 |
119.2 |
120.0 |
| C1 |
C2 |
C3 |
121.0 |
120.7 |
| C1 |
C2 |
HC2 |
121.3 |
119.6 |
| C6 |
C1 |
C7 |
121.5 |
120.0 |
| C1 |
C6 |
C5 |
117.5 |
119.4 |
| C1 |
C6 |
HC6 |
121.8 |
120.2 |
| C1 |
C7 |
N1 |
118.8 |
120.0 |
| C1 |
C7 |
N2 |
119.3 |
120.0 |
| C3 |
C2 |
HC2 |
117.7 |
119.7 |
| C2 |
C3 |
C4 |
118.3 |
120.3 |
| C2 |
C3 |
HC3 |
121.9 |
119.8 |
| C4 |
C3 |
HC3 |
119.8 |
119.9 |
| C3 |
C4 |
C5 |
121.3 |
119.5 |
| C3 |
C4 |
N3 |
129.1 |
133.0 |
| C5 |
C4 |
N3 |
109.6 |
107.4 |
| C4 |
C5 |
C6 |
122.6 |
120.0 |
| C4 |
C5 |
C9 |
105.9 |
106.3 |
| C4 |
N3 |
C8 |
109.8 |
109.8 |
| C4 |
N3 |
HN3 |
127.8 |
125.1 |
| C6 |
C5 |
C9 |
131.5 |
133.7 |
| C5 |
C6 |
HC6 |
120.7 |
120.3 |
| C5 |
C9 |
C8 |
106.8 |
106.8 |
| C5 |
C9 |
HC9 |
127.8 |
126.6 |
| N1 |
C7 |
N2 |
121.9 |
120.0 |
| C7 |
N1 |
HH11 |
118.6 |
120.0 |
| C7 |
N1 |
HH12 |
125.6 |
120.0 |
| C7 |
N2 |
HH21 |
119.8 |
120.0 |
| C7 |
N2 |
HH22 |
124.0 |
119.9 |
| HH11 |
N1 |
HH12 |
115.8 |
120.0 |
| HH21 |
N2 |
HH22 |
116.2 |
120.0 |
| C8 |
N3 |
HN3 |
122.4 |
125.0 |
| N3 |
C8 |
C9 |
107.8 |
109.6 |
| N3 |
C8 |
C1' |
125.0 |
125.2 |
| C8 |
C9 |
HC9 |
125.4 |
126.6 |
| C9 |
C8 |
C1' |
127.2 |
125.2 |
| C8 |
C1' |
C2' |
118.9 |
120.2 |
| C8 |
C1' |
C6' |
120.3 |
120.2 |
| C2' |
C1' |
C6' |
120.8 |
119.6 |
| C1' |
C2' |
C3' |
120.5 |
120.0 |
| C1' |
C2' |
HC2' |
121.1 |
120.0 |
| C1' |
C6' |
C5' |
118.8 |
119.7 |
| C1' |
C6' |
O6' |
121.5 |
120.2 |
| C3' |
C2' |
HC2' |
118.4 |
120.1 |
| C2' |
C3' |
C4' |
119.4 |
120.3 |
| C2' |
C3' |
HC3' |
120.4 |
119.9 |
| C4' |
C3' |
HC3' |
120.2 |
119.8 |
| C3' |
C4' |
C5' |
120.5 |
120.3 |
| C3' |
C4' |
HC4' |
119.5 |
119.9 |
| C5' |
C4' |
HC4' |
120.0 |
119.8 |
| C4' |
C5' |
C6' |
120.0 |
120.1 |
| C4' |
C5' |
HC5' |
119.4 |
120.0 |
| C6' |
C5' |
HC5' |
120.6 |
119.9 |
| C5' |
C6' |
O6' |
119.7 |
120.1 |
| C6' |
O6' |
HO6 |
109.5 |
106.8 |
Torsion Angles for 124
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
C7 |
178.9 |
180.4 |
| C2 |
C1 |
C6 |
C5 |
359.7 |
359.4 |
| C2 |
C1 |
C6 |
HC6 |
179.6 |
179.6 |
| C2 |
C1 |
C7 |
N1 |
167.7 |
180.0 |
| C2 |
C1 |
C7 |
N2 |
348.4 |
0.1 |
| C3 |
C2 |
C1 |
HC2 |
181.7 |
180.1 |
| C1 |
C2 |
C3 |
C4 |
0.1 |
359.9 |
| C1 |
C2 |
C3 |
HC3 |
179.5 |
180.0 |
| C2 |
C1 |
C6 |
C7 |
181.1 |
179.6 |
| C6 |
C1 |
C2 |
C3 |
0.2 |
0.3 |
| C6 |
C1 |
C2 |
HC2 |
178.5 |
180.3 |
| C6 |
C1 |
C7 |
N1 |
348.8 |
359.6 |
| C6 |
C1 |
C7 |
N2 |
169.5 |
179.7 |
| C4 |
C5 |
C6 |
C1 |
0.1 |
0.6 |
| C1 |
C6 |
C5 |
C9 |
180.8 |
180.2 |
| C5 |
C6 |
C1 |
HC6 |
180.1 |
179.8 |
| C2 |
C1 |
C7 |
C6 |
178.9 |
180.4 |
| C7 |
C1 |
C2 |
C3 |
181.3 |
180.0 |
| C7 |
C1 |
C2 |
HC2 |
359.6 |
359.9 |
| C7 |
C1 |
C6 |
C5 |
178.6 |
179.8 |
| C7 |
C1 |
C6 |
HC6 |
358.5 |
360.0 |
| N1 |
C7 |
C1 |
N2 |
179.3 |
179.9 |
| C1 |
C7 |
N1 |
HH11 |
359.4 |
180.0 |
| C1 |
C7 |
N1 |
HH12 |
178.6 |
0.0 |
| C1 |
C7 |
N2 |
HH21 |
357.9 |
359.9 |
| C1 |
C7 |
N2 |
HH22 |
177.8 |
179.7 |
| C3 |
C2 |
C1 |
C6 |
0.2 |
0.3 |
| C3 |
C2 |
C1 |
C7 |
181.3 |
180.0 |
| C1 |
C2 |
C3 |
HC2 |
178.4 |
179.9 |
| C4 |
C3 |
C2 |
HC3 |
180.6 |
180.0 |
| C2 |
C3 |
C4 |
C5 |
359.7 |
0.0 |
| C2 |
C3 |
C4 |
N3 |
179.4 |
180.1 |
| HC2 |
C2 |
C1 |
C6 |
178.5 |
180.3 |
| HC2 |
C2 |
C1 |
C7 |
359.6 |
359.9 |
| C1 |
C2 |
HC2 |
C3 |
181.6 |
180.1 |
| HC2 |
C2 |
C3 |
C4 |
181.7 |
180.0 |
| HC2 |
C2 |
C3 |
HC3 |
1.2 |
0.1 |
| C4 |
C3 |
C2 |
HC2 |
181.7 |
180.0 |
| C2 |
C3 |
C4 |
HC3 |
179.4 |
180.0 |
| C5 |
C4 |
C3 |
N3 |
180.3 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
0.3 |
359.7 |
| C3 |
C4 |
C5 |
C9 |
179.7 |
180.0 |
| C3 |
C4 |
N3 |
C8 |
180.7 |
180.0 |
| C3 |
C4 |
N3 |
HN3 |
2.8 |
360.0 |
| HC3 |
C3 |
C2 |
HC2 |
1.2 |
0.1 |
| C2 |
C3 |
HC3 |
C4 |
180.6 |
180.0 |
| HC3 |
C3 |
C4 |
C5 |
180.2 |
180.0 |
| HC3 |
C3 |
C4 |
N3 |
360.0 |
0.0 |
| C1 |
C6 |
C5 |
C4 |
0.1 |
0.6 |
| C5 |
C4 |
C3 |
HC3 |
180.2 |
180.0 |
| C3 |
C4 |
C5 |
N3 |
179.8 |
180.0 |
| C5 |
C4 |
N3 |
C8 |
0.4 |
0.0 |
| C5 |
C4 |
N3 |
HN3 |
182.5 |
180.0 |
| C6 |
C5 |
C4 |
C9 |
180.5 |
179.7 |
| C4 |
C5 |
C6 |
HC6 |
180.1 |
180.3 |
| C4 |
C5 |
C9 |
C8 |
359.7 |
0.0 |
| C4 |
C5 |
C9 |
HC9 |
177.7 |
180.0 |
| N3 |
C4 |
C3 |
HC3 |
360.0 |
0.0 |
| C3 |
C4 |
N3 |
C5 |
180.2 |
180.0 |
| N3 |
C4 |
C5 |
C6 |
180.5 |
179.7 |
| N3 |
C4 |
C5 |
C9 |
359.9 |
360.0 |
| C8 |
N3 |
C4 |
HN3 |
177.9 |
180.0 |
| C4 |
N3 |
C8 |
C9 |
359.4 |
360.0 |
| C4 |
N3 |
C8 |
C1' |
179.2 |
180.0 |
| C5 |
C6 |
C1 |
C7 |
178.6 |
179.8 |
| C1 |
C6 |
C5 |
HC6 |
179.9 |
180.2 |
| C6 |
C5 |
C4 |
N3 |
180.5 |
179.7 |
| C4 |
C5 |
C6 |
C9 |
179.3 |
180.4 |
| C6 |
C5 |
C9 |
C8 |
179.1 |
180.3 |
| C6 |
C5 |
C9 |
HC9 |
357.1 |
0.3 |
| C9 |
C5 |
C4 |
N3 |
359.9 |
360.0 |
| C4 |
C5 |
C9 |
C6 |
180.6 |
179.7 |
| C9 |
C5 |
C6 |
HC6 |
0.8 |
360.0 |
| N3 |
C8 |
C9 |
C5 |
0.5 |
0.0 |
| C8 |
C9 |
C5 |
HC9 |
182.0 |
180.0 |
| C5 |
C9 |
C8 |
C1' |
180.8 |
180.0 |
| HC6 |
C6 |
C1 |
C7 |
358.5 |
360.0 |
| C1 |
C6 |
HC6 |
C5 |
180.1 |
179.8 |
| HC6 |
C6 |
C5 |
C9 |
0.8 |
360.0 |
| C1 |
C7 |
N1 |
N2 |
180.7 |
180.1 |
| N1 |
C7 |
N2 |
HH21 |
178.6 |
180.0 |
| N1 |
C7 |
N2 |
HH22 |
358.6 |
359.8 |
| HH11 |
N1 |
C7 |
HH12 |
180.8 |
180.0 |
| C1 |
C7 |
N2 |
N1 |
179.2 |
179.9 |
| N2 |
C7 |
N1 |
HH11 |
178.7 |
360.0 |
| N2 |
C7 |
N1 |
HH12 |
357.9 |
180.0 |
| HH21 |
N2 |
C7 |
HH22 |
180.1 |
180.2 |
| HH11 |
N1 |
C7 |
N2 |
178.7 |
360.0 |
| C7 |
N1 |
HH11 |
HH12 |
179.3 |
180.0 |
| HH12 |
N1 |
C7 |
N2 |
357.9 |
180.0 |
| C7 |
N1 |
HH12 |
HH11 |
180.8 |
180.0 |
| C7 |
N2 |
HH21 |
HH22 |
179.9 |
179.8 |
| C7 |
N2 |
HH22 |
HH21 |
180.1 |
180.2 |
| C4 |
N3 |
C8 |
HN3 |
182.0 |
180.0 |
| C5 |
C9 |
C8 |
N3 |
0.5 |
0.0 |
| N3 |
C8 |
C9 |
HC9 |
182.5 |
180.0 |
| C9 |
C8 |
N3 |
C1' |
180.3 |
180.0 |
| N3 |
C8 |
C1' |
C2' |
194.5 |
140.0 |
| N3 |
C8 |
C1' |
C6' |
15.0 |
319.8 |
| C4 |
N3 |
HN3 |
C8 |
177.6 |
180.0 |
| HN3 |
N3 |
C8 |
C9 |
177.4 |
180.0 |
| HN3 |
N3 |
C8 |
C1' |
357.2 |
360.0 |
| C5 |
C9 |
C8 |
HC9 |
178.0 |
180.0 |
| C9 |
C8 |
N3 |
HN3 |
177.4 |
180.0 |
| N3 |
C8 |
C9 |
C1' |
179.7 |
180.0 |
| C9 |
C8 |
C1' |
C2' |
14.2 |
320.0 |
| C9 |
C8 |
C1' |
C6' |
194.7 |
139.7 |
| C5 |
C9 |
HC9 |
C8 |
182.4 |
180.0 |
| HC9 |
C9 |
C8 |
C1' |
2.8 |
0.0 |
| C1' |
C8 |
N3 |
HN3 |
357.2 |
360.0 |
| N3 |
C8 |
C1' |
C9 |
180.3 |
180.0 |
| C1' |
C8 |
C9 |
HC9 |
2.8 |
0.0 |
| C2' |
C1' |
C8 |
C6' |
179.5 |
180.2 |
| C8 |
C1' |
C2' |
C3' |
179.9 |
180.0 |
| C8 |
C1' |
C2' |
HC2' |
359.9 |
0.0 |
| C8 |
C1' |
C6' |
C5' |
180.0 |
179.7 |
| C8 |
C1' |
C6' |
O6' |
359.6 |
0.2 |
| C8 |
C1' |
C2' |
C6' |
180.5 |
179.8 |
| C2' |
C1' |
C6' |
C5' |
0.5 |
359.5 |
| C2' |
C1' |
C6' |
O6' |
180.1 |
180.0 |
| C3' |
C2' |
C1' |
HC2' |
180.0 |
180.0 |
| C1' |
C2' |
C3' |
C4' |
0.5 |
0.0 |
| C1' |
C2' |
C3' |
HC3' |
181.3 |
180.0 |
| C8 |
C1' |
C6' |
C2' |
179.5 |
180.2 |
| C6' |
C1' |
C2' |
C3' |
359.4 |
0.2 |
| C6' |
C1' |
C2' |
HC2' |
179.4 |
180.2 |
| C4' |
C5' |
C6' |
C1' |
359.6 |
0.6 |
| C1' |
C6' |
C5' |
HC5' |
178.8 |
180.3 |
| C5' |
C6' |
C1' |
O6' |
180.4 |
179.5 |
| C1' |
C6' |
O6' |
HO6 |
186.1 |
269.5 |
| C3' |
C2' |
C1' |
C6' |
359.4 |
0.2 |
| C1' |
C2' |
C3' |
HC2' |
180.0 |
180.0 |
| C4' |
C3' |
C2' |
HC3' |
179.2 |
180.0 |
| C2' |
C3' |
C4' |
C5' |
359.6 |
0.0 |
| C2' |
C3' |
C4' |
HC4' |
181.7 |
179.9 |
| HC2' |
C2' |
C1' |
C6' |
179.4 |
180.2 |
| C1' |
C2' |
HC2' |
C3' |
180.0 |
180.0 |
| HC2' |
C2' |
C3' |
C4' |
180.5 |
180.0 |
| HC2' |
C2' |
C3' |
HC3' |
1.3 |
0.0 |
| C4' |
C3' |
C2' |
HC2' |
180.5 |
180.0 |
| C2' |
C3' |
C4' |
HC3' |
180.8 |
180.0 |
| C5' |
C4' |
C3' |
HC4' |
177.9 |
180.1 |
| C3' |
C4' |
C5' |
C6' |
0.3 |
359.7 |
| C3' |
C4' |
C5' |
HC5' |
181.2 |
180.0 |
| HC3' |
C3' |
C2' |
HC2' |
1.3 |
0.0 |
| C2' |
C3' |
HC3' |
C4' |
179.2 |
180.0 |
| HC3' |
C3' |
C4' |
C5' |
178.8 |
180.0 |
| HC3' |
C3' |
C4' |
HC4' |
0.9 |
359.9 |
| C1' |
C6' |
C5' |
C4' |
359.6 |
0.6 |
| C5' |
C4' |
C3' |
HC3' |
178.8 |
180.0 |
| C3' |
C4' |
C5' |
HC4' |
182.1 |
179.9 |
| C6' |
C5' |
C4' |
HC5' |
179.1 |
179.7 |
| C4' |
C5' |
C6' |
O6' |
180.0 |
180.0 |
| HC4' |
C4' |
C3' |
HC3' |
0.9 |
359.9 |
| C3' |
C4' |
HC4' |
C5' |
178.0 |
180.1 |
| HC4' |
C4' |
C5' |
C6' |
178.2 |
179.8 |
| HC4' |
C4' |
C5' |
HC5' |
359.1 |
0.1 |
| C1' |
C6' |
C5' |
O6' |
179.6 |
180.5 |
| C6' |
C5' |
C4' |
HC4' |
178.2 |
179.8 |
| C4' |
C5' |
C6' |
HC5' |
180.9 |
180.3 |
| C5' |
C6' |
O6' |
HO6 |
5.8 |
90.0 |
| HC5' |
C5' |
C4' |
HC4' |
359.1 |
0.1 |
| C4' |
C5' |
HC5' |
C6' |
179.1 |
179.7 |
| HC5' |
C5' |
C6' |
O6' |
359.1 |
359.7 |
| C1' |
C6' |
O6' |
C5' |
180.4 |
179.5 |
| O6' |
C6' |
C5' |
HC5' |
359.1 |
359.7 |