PDB Chemical Component 122
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 122
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.433 |
1.401 |
| C1 |
C6 |
1.402 |
1.395 |
| C1 |
C7 |
1.404 |
1.477 |
| C2 |
C3 |
1.405 |
1.362 |
| C2 |
HC2 |
1.064 |
1.079 |
| C3 |
C4 |
1.366 |
1.401 |
| C3 |
HC3 |
1.085 |
1.080 |
| C4 |
C5 |
1.347 |
1.408 |
| C4 |
N3 |
1.320 |
1.348 |
| C5 |
C6 |
1.363 |
1.384 |
| C5 |
N4 |
1.288 |
1.383 |
| C6 |
HC6 |
1.074 |
1.079 |
| C7 |
N1 |
1.317 |
1.333 |
| C7 |
N2 |
1.312 |
1.332 |
| N1 |
HH11 |
1.015 |
0.970 |
| N1 |
HH12 |
0.996 |
0.971 |
| N2 |
HH21 |
1.001 |
0.970 |
| N2 |
HH22 |
0.993 |
0.970 |
| N3 |
C8 |
1.328 |
1.313 |
| N4 |
C8 |
1.298 |
1.367 |
| N4 |
HN4 |
0.985 |
0.970 |
| C8 |
C1' |
1.455 |
1.477 |
| C1' |
C2' |
1.435 |
1.396 |
| C1' |
C6' |
1.457 |
1.401 |
| C2' |
C3' |
1.378 |
1.379 |
| C2' |
HC2' |
1.077 |
1.080 |
| C3' |
C4' |
1.386 |
1.384 |
| C3' |
HC3' |
1.071 |
1.080 |
| C4' |
C5' |
1.392 |
1.382 |
| C4' |
HC4' |
1.065 |
1.079 |
| C5' |
C6' |
1.389 |
1.386 |
| C5' |
HC5' |
1.097 |
1.080 |
| C6' |
O6' |
1.378 |
1.358 |
| O6' |
HO6 |
0.950 |
0.967 |
Bond Angles for 122
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
116.6 |
120.1 |
| C2 |
C1 |
C7 |
122.4 |
119.9 |
| C1 |
C2 |
C3 |
124.5 |
120.5 |
| C1 |
C2 |
HC2 |
117.9 |
119.7 |
| C6 |
C1 |
C7 |
121.0 |
119.9 |
| C1 |
C6 |
C5 |
117.3 |
119.6 |
| C1 |
C6 |
HC6 |
125.2 |
120.2 |
| C1 |
C7 |
N1 |
120.0 |
120.0 |
| C1 |
C7 |
N2 |
119.6 |
120.0 |
| C3 |
C2 |
HC2 |
117.6 |
119.8 |
| C2 |
C3 |
C4 |
114.3 |
120.1 |
| C2 |
C3 |
HC3 |
123.2 |
119.9 |
| C4 |
C3 |
HC3 |
122.5 |
120.0 |
| C3 |
C4 |
C5 |
122.4 |
119.6 |
| C3 |
C4 |
N3 |
124.8 |
133.1 |
| C5 |
C4 |
N3 |
112.7 |
107.2 |
| C4 |
C5 |
C6 |
124.9 |
120.0 |
| C4 |
C5 |
N4 |
106.0 |
106.1 |
| C4 |
N3 |
C8 |
99.9 |
109.8 |
| C6 |
C5 |
N4 |
129.1 |
133.9 |
| C5 |
C6 |
HC6 |
117.5 |
120.2 |
| C5 |
N4 |
C8 |
106.4 |
107.1 |
| C5 |
N4 |
HN4 |
131.6 |
126.4 |
| N1 |
C7 |
N2 |
120.4 |
120.0 |
| C7 |
N1 |
HH11 |
119.2 |
120.0 |
| C7 |
N1 |
HH12 |
125.1 |
120.0 |
| C7 |
N2 |
HH21 |
119.2 |
120.0 |
| C7 |
N2 |
HH22 |
125.2 |
120.0 |
| HH11 |
N1 |
HH12 |
115.6 |
120.0 |
| HH21 |
N2 |
HH22 |
115.6 |
120.0 |
| N3 |
C8 |
N4 |
114.9 |
109.8 |
| N3 |
C8 |
C1' |
124.8 |
125.1 |
| C8 |
N4 |
HN4 |
121.9 |
126.5 |
| N4 |
C8 |
C1' |
120.3 |
125.1 |
| C8 |
C1' |
C2' |
119.0 |
120.2 |
| C8 |
C1' |
C6' |
125.8 |
120.2 |
| C2' |
C1' |
C6' |
115.2 |
119.6 |
| C1' |
C2' |
C3' |
122.2 |
119.9 |
| C1' |
C2' |
HC2' |
119.0 |
120.0 |
| C1' |
C6' |
C5' |
122.1 |
119.8 |
| C1' |
C6' |
O6' |
127.0 |
120.1 |
| C3' |
C2' |
HC2' |
118.8 |
120.1 |
| C2' |
C3' |
C4' |
119.9 |
120.3 |
| C2' |
C3' |
HC3' |
119.7 |
119.9 |
| C4' |
C3' |
HC3' |
120.4 |
119.9 |
| C3' |
C4' |
C5' |
121.9 |
120.3 |
| C3' |
C4' |
HC4' |
119.9 |
119.8 |
| C5' |
C4' |
HC4' |
118.2 |
119.9 |
| C4' |
C5' |
C6' |
118.7 |
120.1 |
| C4' |
C5' |
HC5' |
123.4 |
119.9 |
| C6' |
C5' |
HC5' |
117.8 |
120.0 |
| C5' |
C6' |
O6' |
110.9 |
120.1 |
| C6' |
O6' |
HO6 |
109.5 |
106.8 |
Torsion Angles for 122
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
C7 |
178.3 |
180.2 |
| C2 |
C1 |
C6 |
C5 |
0.1 |
359.4 |
| C2 |
C1 |
C6 |
HC6 |
180.2 |
179.7 |
| C2 |
C1 |
C7 |
N1 |
161.4 |
180.0 |
| C2 |
C1 |
C7 |
N2 |
341.4 |
359.9 |
| C3 |
C2 |
C1 |
HC2 |
178.9 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
0.2 |
360.0 |
| C1 |
C2 |
C3 |
HC3 |
180.1 |
180.0 |
| C2 |
C1 |
C6 |
C7 |
181.7 |
179.8 |
| C6 |
C1 |
C2 |
C3 |
359.5 |
0.3 |
| C6 |
C1 |
C2 |
HC2 |
180.6 |
180.3 |
| C6 |
C1 |
C7 |
N1 |
343.2 |
359.8 |
| C6 |
C1 |
C7 |
N2 |
163.2 |
179.7 |
| C4 |
C5 |
C6 |
C1 |
0.8 |
0.5 |
| C1 |
C6 |
C5 |
N4 |
179.7 |
180.3 |
| C5 |
C6 |
C1 |
HC6 |
179.8 |
179.8 |
| C2 |
C1 |
C7 |
C6 |
178.2 |
180.2 |
| C7 |
C1 |
C2 |
C3 |
181.2 |
180.1 |
| C7 |
C1 |
C2 |
HC2 |
2.3 |
0.1 |
| C7 |
C1 |
C6 |
C5 |
178.4 |
179.7 |
| C7 |
C1 |
C6 |
HC6 |
358.6 |
359.9 |
| N1 |
C7 |
C1 |
N2 |
180.0 |
180.1 |
| C1 |
C7 |
N1 |
HH11 |
358.5 |
180.0 |
| C1 |
C7 |
N1 |
HH12 |
179.2 |
359.9 |
| C1 |
C7 |
N2 |
HH21 |
358.1 |
0.1 |
| C1 |
C7 |
N2 |
HH22 |
178.5 |
179.7 |
| C3 |
C2 |
C1 |
C6 |
359.5 |
0.3 |
| C3 |
C2 |
C1 |
C7 |
181.2 |
180.1 |
| C1 |
C2 |
C3 |
HC2 |
181.1 |
180.0 |
| C4 |
C3 |
C2 |
HC3 |
180.1 |
180.0 |
| C2 |
C3 |
C4 |
C5 |
0.6 |
0.0 |
| C2 |
C3 |
C4 |
N3 |
178.8 |
180.0 |
| HC2 |
C2 |
C1 |
C6 |
180.6 |
180.3 |
| HC2 |
C2 |
C1 |
C7 |
2.3 |
0.1 |
| C1 |
C2 |
HC2 |
C3 |
179.0 |
180.0 |
| HC2 |
C2 |
C3 |
C4 |
179.1 |
180.0 |
| HC2 |
C2 |
C3 |
HC3 |
359.0 |
360.0 |
| C4 |
C3 |
C2 |
HC2 |
179.1 |
180.0 |
| C2 |
C3 |
C4 |
HC3 |
179.9 |
180.0 |
| C5 |
C4 |
C3 |
N3 |
181.9 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
358.8 |
359.7 |
| C3 |
C4 |
C5 |
N4 |
179.7 |
179.9 |
| C3 |
C4 |
N3 |
C8 |
180.4 |
180.0 |
| HC3 |
C3 |
C2 |
HC2 |
359.0 |
360.0 |
| C2 |
C3 |
HC3 |
C4 |
180.1 |
180.0 |
| HC3 |
C3 |
C4 |
C5 |
180.7 |
180.0 |
| HC3 |
C3 |
C4 |
N3 |
358.8 |
360.0 |
| C1 |
C6 |
C5 |
C4 |
0.8 |
0.5 |
| C5 |
C4 |
C3 |
HC3 |
180.7 |
180.0 |
| C3 |
C4 |
C5 |
N3 |
178.4 |
180.0 |
| C5 |
C4 |
N3 |
C8 |
358.7 |
360.0 |
| C6 |
C5 |
C4 |
N4 |
179.1 |
179.8 |
| C4 |
C5 |
C6 |
HC6 |
180.6 |
180.3 |
| C4 |
C5 |
N4 |
C8 |
359.4 |
0.1 |
| C4 |
C5 |
N4 |
HN4 |
179.4 |
180.0 |
| N3 |
C4 |
C3 |
HC3 |
358.8 |
360.0 |
| C3 |
C4 |
N3 |
C5 |
181.7 |
180.0 |
| N3 |
C4 |
C5 |
C6 |
180.4 |
179.8 |
| N3 |
C4 |
C5 |
N4 |
1.3 |
360.0 |
| C4 |
N3 |
C8 |
N4 |
0.9 |
0.1 |
| C4 |
N3 |
C8 |
C1' |
180.5 |
180.0 |
| C5 |
C6 |
C1 |
C7 |
178.4 |
179.7 |
| C1 |
C6 |
C5 |
HC6 |
180.2 |
180.2 |
| C6 |
C5 |
C4 |
N3 |
180.4 |
179.8 |
| C4 |
C5 |
C6 |
N4 |
181.1 |
180.3 |
| C6 |
C5 |
N4 |
C8 |
180.3 |
180.3 |
| C6 |
C5 |
N4 |
HN4 |
0.3 |
0.2 |
| N4 |
C5 |
C4 |
N3 |
1.3 |
360.0 |
| C4 |
C5 |
N4 |
C6 |
179.1 |
179.7 |
| N4 |
C5 |
C6 |
HC6 |
359.6 |
0.0 |
| N3 |
C8 |
N4 |
C5 |
359.8 |
359.9 |
| C8 |
N4 |
C5 |
HN4 |
179.9 |
180.1 |
| C5 |
N4 |
C8 |
C1' |
180.2 |
180.0 |
| HC6 |
C6 |
C1 |
C7 |
358.6 |
359.9 |
| C1 |
C6 |
HC6 |
C5 |
179.8 |
179.8 |
| HC6 |
C6 |
C5 |
N4 |
359.6 |
0.0 |
| C1 |
C7 |
N1 |
N2 |
180.0 |
179.9 |
| N1 |
C7 |
N2 |
HH21 |
178.0 |
180.0 |
| N1 |
C7 |
N2 |
HH22 |
358.5 |
359.6 |
| HH11 |
N1 |
C7 |
HH12 |
179.3 |
180.1 |
| C1 |
C7 |
N2 |
N1 |
180.0 |
180.1 |
| N2 |
C7 |
N1 |
HH11 |
178.5 |
0.1 |
| N2 |
C7 |
N1 |
HH12 |
359.2 |
180.0 |
| HH21 |
N2 |
C7 |
HH22 |
179.5 |
180.3 |
| HH11 |
N1 |
C7 |
N2 |
178.5 |
0.1 |
| C7 |
N1 |
HH11 |
HH12 |
180.7 |
179.9 |
| HH12 |
N1 |
C7 |
N2 |
359.2 |
180.0 |
| C7 |
N1 |
HH12 |
HH11 |
179.3 |
180.1 |
| C7 |
N2 |
HH21 |
HH22 |
180.4 |
179.7 |
| C7 |
N2 |
HH22 |
HH21 |
179.5 |
180.3 |
| C5 |
N4 |
C8 |
N3 |
359.8 |
359.9 |
| N3 |
C8 |
N4 |
HN4 |
179.8 |
180.0 |
| N4 |
C8 |
N3 |
C1' |
180.4 |
180.1 |
| N3 |
C8 |
C1' |
C2' |
168.1 |
140.3 |
| N3 |
C8 |
C1' |
C6' |
348.6 |
320.0 |
| C5 |
N4 |
C8 |
HN4 |
180.1 |
179.9 |
| N3 |
C8 |
N4 |
C1' |
179.6 |
179.9 |
| N4 |
C8 |
C1' |
C2' |
347.6 |
320.2 |
| N4 |
C8 |
C1' |
C6' |
168.2 |
139.9 |
| C5 |
N4 |
HN4 |
C8 |
179.9 |
180.1 |
| HN4 |
N4 |
C8 |
C1' |
0.1 |
0.1 |
| N3 |
C8 |
C1' |
N4 |
180.4 |
180.1 |
| C1' |
C8 |
N4 |
HN4 |
0.1 |
0.1 |
| C2' |
C1' |
C8 |
C6' |
179.5 |
180.3 |
| C8 |
C1' |
C2' |
C3' |
180.9 |
180.0 |
| C8 |
C1' |
C2' |
HC2' |
0.2 |
359.9 |
| C8 |
C1' |
C6' |
C5' |
178.9 |
179.8 |
| C8 |
C1' |
C6' |
O6' |
357.6 |
0.3 |
| C8 |
C1' |
C2' |
C6' |
180.5 |
179.7 |
| C2' |
C1' |
C6' |
C5' |
359.4 |
359.5 |
| C2' |
C1' |
C6' |
O6' |
178.2 |
180.0 |
| C3' |
C2' |
C1' |
HC2' |
180.7 |
180.0 |
| C1' |
C2' |
C3' |
C4' |
359.8 |
360.0 |
| C1' |
C2' |
C3' |
HC3' |
180.3 |
180.0 |
| C8 |
C1' |
C6' |
C2' |
179.5 |
180.3 |
| C6' |
C1' |
C2' |
C3' |
0.4 |
0.3 |
| C6' |
C1' |
C2' |
HC2' |
179.7 |
180.2 |
| C4' |
C5' |
C6' |
C1' |
0.5 |
0.5 |
| C1' |
C6' |
C5' |
HC5' |
180.7 |
180.4 |
| C5' |
C6' |
C1' |
O6' |
181.2 |
179.5 |
| C1' |
C6' |
O6' |
HO6 |
196.9 |
269.5 |
| C3' |
C2' |
C1' |
C6' |
0.4 |
0.3 |
| C1' |
C2' |
C3' |
HC2' |
179.3 |
180.0 |
| C4' |
C3' |
C2' |
HC3' |
179.5 |
180.0 |
| C2' |
C3' |
C4' |
C5' |
0.0 |
360.0 |
| C2' |
C3' |
C4' |
HC4' |
179.8 |
179.9 |
| HC2' |
C2' |
C1' |
C6' |
179.7 |
180.2 |
| C1' |
C2' |
HC2' |
C3' |
180.7 |
180.0 |
| HC2' |
C2' |
C3' |
C4' |
180.5 |
180.0 |
| HC2' |
C2' |
C3' |
HC3' |
1.0 |
0.0 |
| C4' |
C3' |
C2' |
HC2' |
180.5 |
180.0 |
| C2' |
C3' |
C4' |
HC3' |
180.5 |
180.0 |
| C5' |
C4' |
C3' |
HC4' |
180.2 |
180.0 |
| C3' |
C4' |
C5' |
C6' |
359.8 |
359.8 |
| C3' |
C4' |
C5' |
HC5' |
179.6 |
179.9 |
| HC3' |
C3' |
C2' |
HC2' |
1.0 |
0.0 |
| C2' |
C3' |
HC3' |
C4' |
179.5 |
180.0 |
| HC3' |
C3' |
C4' |
C5' |
179.6 |
180.0 |
| HC3' |
C3' |
C4' |
HC4' |
359.4 |
360.0 |
| C1' |
C6' |
C5' |
C4' |
0.5 |
0.5 |
| C5' |
C4' |
C3' |
HC3' |
179.6 |
180.0 |
| C3' |
C4' |
C5' |
HC4' |
179.8 |
180.0 |
| C6' |
C5' |
C4' |
HC5' |
180.2 |
179.9 |
| C4' |
C5' |
C6' |
O6' |
181.6 |
180.0 |
| HC4' |
C4' |
C3' |
HC3' |
359.4 |
360.0 |
| C3' |
C4' |
HC4' |
C5' |
180.2 |
180.0 |
| HC4' |
C4' |
C5' |
C6' |
180.0 |
179.8 |
| HC4' |
C4' |
C5' |
HC5' |
359.7 |
359.9 |
| C1' |
C6' |
C5' |
O6' |
178.9 |
180.5 |
| C6' |
C5' |
C4' |
HC4' |
180.0 |
179.8 |
| C4' |
C5' |
C6' |
HC5' |
179.8 |
180.1 |
| C5' |
C6' |
O6' |
HO6 |
15.8 |
90.0 |
| HC5' |
C5' |
C4' |
HC4' |
359.7 |
359.9 |
| C4' |
C5' |
HC5' |
C6' |
180.2 |
179.9 |
| HC5' |
C5' |
C6' |
O6' |
1.8 |
359.9 |
| C1' |
C6' |
O6' |
C5' |
181.1 |
179.5 |
| O6' |
C6' |
C5' |
HC5' |
1.8 |
359.9 |