PDB Chemical Component 120
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 120
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.431 |
1.400 |
| C1 |
C6 |
1.430 |
1.391 |
| C1 |
C7 |
1.393 |
1.478 |
| C2 |
C3 |
1.398 |
1.366 |
| C2 |
HC2 |
1.077 |
1.080 |
| C3 |
C4 |
1.360 |
1.389 |
| C3 |
HC3 |
1.080 |
1.080 |
| C4 |
C5 |
1.357 |
1.408 |
| C4 |
N3 |
1.288 |
1.380 |
| C5 |
C6 |
1.388 |
1.395 |
| C5 |
N4 |
1.331 |
1.357 |
| C6 |
HC6 |
1.079 |
1.080 |
| C7 |
N1 |
1.297 |
1.332 |
| C7 |
N2 |
1.306 |
1.333 |
| N1 |
HH11 |
1.005 |
0.969 |
| N1 |
HH12 |
0.994 |
0.971 |
| N2 |
HH21 |
1.013 |
0.970 |
| N2 |
HH22 |
0.990 |
0.970 |
| N3 |
C8 |
1.297 |
1.370 |
| N3 |
HN3 |
0.981 |
0.970 |
| N4 |
C8 |
1.342 |
1.312 |
| C8 |
C1' |
1.414 |
1.475 |
| C1' |
C2' |
1.384 |
1.390 |
| C1' |
C6' |
1.444 |
1.418 |
| C2' |
C3' |
1.371 |
1.397 |
| C2' |
HC2' |
1.082 |
1.080 |
| C3' |
C4' |
1.380 |
1.357 |
| C3' |
HC3' |
1.081 |
1.080 |
| C4' |
N5' |
1.328 |
1.356 |
| C4' |
HC4' |
1.079 |
1.081 |
| N5' |
C6' |
1.334 |
1.347 |
| N5' |
HN5' |
0.982 |
0.969 |
| C6' |
O6' |
1.220 |
1.219 |
Bond Angles for 120
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
118.1 |
120.2 |
| C2 |
C1 |
C7 |
119.6 |
119.9 |
| C1 |
C2 |
C3 |
122.6 |
120.5 |
| C1 |
C2 |
HC2 |
120.2 |
119.8 |
| C6 |
C1 |
C7 |
122.4 |
119.9 |
| C1 |
C6 |
C5 |
117.3 |
119.5 |
| C1 |
C6 |
HC6 |
121.9 |
120.2 |
| C1 |
C7 |
N1 |
119.2 |
120.0 |
| C1 |
C7 |
N2 |
120.5 |
120.0 |
| C3 |
C2 |
HC2 |
117.2 |
119.7 |
| C2 |
C3 |
C4 |
116.0 |
120.2 |
| C2 |
C3 |
HC3 |
122.5 |
119.9 |
| C4 |
C3 |
HC3 |
121.6 |
120.0 |
| C3 |
C4 |
C5 |
124.2 |
120.1 |
| C3 |
C4 |
N3 |
128.7 |
133.7 |
| C5 |
C4 |
N3 |
107.1 |
106.2 |
| C4 |
C5 |
C6 |
121.9 |
119.5 |
| C4 |
C5 |
N4 |
112.4 |
107.2 |
| C4 |
N3 |
C8 |
105.3 |
107.3 |
| C4 |
N3 |
HN3 |
129.2 |
126.3 |
| C6 |
C5 |
N4 |
125.7 |
133.3 |
| C5 |
C6 |
HC6 |
120.8 |
120.3 |
| C5 |
N4 |
C8 |
98.9 |
109.5 |
| N1 |
C7 |
N2 |
120.4 |
120.0 |
| C7 |
N1 |
HH11 |
118.3 |
120.0 |
| C7 |
N1 |
HH12 |
124.1 |
120.0 |
| C7 |
N2 |
HH21 |
119.4 |
120.0 |
| C7 |
N2 |
HH22 |
123.4 |
119.9 |
| HH11 |
N1 |
HH12 |
117.6 |
120.0 |
| HH21 |
N2 |
HH22 |
117.1 |
120.1 |
| C8 |
N3 |
HN3 |
125.5 |
126.4 |
| N3 |
C8 |
N4 |
116.4 |
109.8 |
| N3 |
C8 |
C1' |
119.6 |
125.1 |
| N4 |
C8 |
C1' |
123.8 |
125.1 |
| C8 |
C1' |
C2' |
119.7 |
120.6 |
| C8 |
C1' |
C6' |
122.3 |
120.6 |
| C2' |
C1' |
C6' |
118.0 |
118.9 |
| C1' |
C2' |
C3' |
120.2 |
119.0 |
| C1' |
C2' |
HC2' |
120.5 |
120.5 |
| C1' |
C6' |
N5' |
116.6 |
119.8 |
| C1' |
C6' |
O6' |
122.1 |
120.1 |
| C3' |
C2' |
HC2' |
119.3 |
120.5 |
| C2' |
C3' |
C4' |
121.6 |
120.1 |
| C2' |
C3' |
HC3' |
119.3 |
120.0 |
| C4' |
C3' |
HC3' |
119.2 |
119.9 |
| C3' |
C4' |
N5' |
116.5 |
121.2 |
| C3' |
C4' |
HC4' |
121.4 |
119.4 |
| N5' |
C4' |
HC4' |
122.1 |
119.4 |
| C4' |
N5' |
C6' |
127.1 |
121.0 |
| C4' |
N5' |
HN5' |
114.4 |
119.5 |
| C6' |
N5' |
HN5' |
118.4 |
119.5 |
| N5' |
C6' |
O6' |
121.3 |
120.1 |
Torsion Angles for 120
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
C7 |
179.2 |
180.3 |
| C2 |
C1 |
C6 |
C5 |
359.9 |
359.4 |
| C2 |
C1 |
C6 |
HC6 |
179.6 |
179.6 |
| C2 |
C1 |
C7 |
N1 |
168.4 |
180.0 |
| C2 |
C1 |
C7 |
N2 |
349.1 |
360.0 |
| C3 |
C2 |
C1 |
HC2 |
179.9 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
0.2 |
0.0 |
| C1 |
C2 |
C3 |
HC3 |
180.2 |
180.0 |
| C2 |
C1 |
C6 |
C7 |
180.8 |
179.7 |
| C6 |
C1 |
C2 |
C3 |
359.9 |
0.3 |
| C6 |
C1 |
C2 |
HC2 |
180.0 |
180.3 |
| C6 |
C1 |
C7 |
N1 |
349.2 |
359.8 |
| C6 |
C1 |
C7 |
N2 |
169.8 |
179.7 |
| C4 |
C5 |
C6 |
C1 |
0.3 |
0.6 |
| C1 |
C6 |
C5 |
N4 |
179.5 |
180.2 |
| C5 |
C6 |
C1 |
HC6 |
180.3 |
179.8 |
| C2 |
C1 |
C7 |
C6 |
179.2 |
180.3 |
| C7 |
C1 |
C2 |
C3 |
180.6 |
180.0 |
| C7 |
C1 |
C2 |
HC2 |
0.8 |
360.0 |
| C7 |
C1 |
C6 |
C5 |
179.1 |
179.7 |
| C7 |
C1 |
C6 |
HC6 |
358.8 |
359.9 |
| N1 |
C7 |
C1 |
N2 |
179.4 |
180.1 |
| C1 |
C7 |
N1 |
HH11 |
357.1 |
360.0 |
| C1 |
C7 |
N1 |
HH12 |
175.5 |
180.0 |
| C1 |
C7 |
N2 |
HH21 |
1.6 |
180.0 |
| C1 |
C7 |
N2 |
HH22 |
178.7 |
359.7 |
| C3 |
C2 |
C1 |
C6 |
359.9 |
0.3 |
| C3 |
C2 |
C1 |
C7 |
180.6 |
180.0 |
| C1 |
C2 |
C3 |
HC2 |
180.1 |
180.0 |
| C4 |
C3 |
C2 |
HC3 |
179.9 |
180.0 |
| C2 |
C3 |
C4 |
C5 |
0.0 |
0.0 |
| C2 |
C3 |
C4 |
N3 |
179.6 |
179.9 |
| HC2 |
C2 |
C1 |
C6 |
180.0 |
180.3 |
| HC2 |
C2 |
C1 |
C7 |
0.8 |
360.0 |
| C1 |
C2 |
HC2 |
C3 |
179.9 |
180.0 |
| HC2 |
C2 |
C3 |
C4 |
180.0 |
180.0 |
| HC2 |
C2 |
C3 |
HC3 |
0.1 |
360.0 |
| C4 |
C3 |
C2 |
HC2 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
HC3 |
180.1 |
180.0 |
| C5 |
C4 |
C3 |
N3 |
180.4 |
180.1 |
| C3 |
C4 |
C5 |
C6 |
359.7 |
359.7 |
| C3 |
C4 |
C5 |
N4 |
180.5 |
180.0 |
| C3 |
C4 |
N3 |
C8 |
179.5 |
180.0 |
| C3 |
C4 |
N3 |
HN3 |
0.1 |
0.0 |
| HC3 |
C3 |
C2 |
HC2 |
0.1 |
360.0 |
| C2 |
C3 |
HC3 |
C4 |
179.9 |
180.0 |
| HC3 |
C3 |
C4 |
C5 |
179.9 |
180.0 |
| HC3 |
C3 |
C4 |
N3 |
359.6 |
360.0 |
| C1 |
C6 |
C5 |
C4 |
0.3 |
0.6 |
| C5 |
C4 |
C3 |
HC3 |
179.9 |
180.0 |
| C3 |
C4 |
C5 |
N3 |
179.7 |
180.0 |
| C5 |
C4 |
N3 |
C8 |
359.2 |
360.0 |
| C5 |
C4 |
N3 |
HN3 |
179.8 |
180.0 |
| C6 |
C5 |
C4 |
N4 |
179.3 |
179.7 |
| C4 |
C5 |
C6 |
HC6 |
180.6 |
180.4 |
| C4 |
C5 |
N4 |
C8 |
359.6 |
359.9 |
| N3 |
C4 |
C3 |
HC3 |
359.6 |
360.0 |
| C3 |
C4 |
N3 |
C5 |
180.3 |
180.1 |
| N3 |
C4 |
C5 |
C6 |
180.0 |
179.7 |
| N3 |
C4 |
C5 |
N4 |
0.8 |
0.0 |
| C8 |
N3 |
C4 |
HN3 |
179.4 |
180.0 |
| C4 |
N3 |
C8 |
N4 |
0.6 |
360.0 |
| C4 |
N3 |
C8 |
C1' |
175.9 |
180.0 |
| C5 |
C6 |
C1 |
C7 |
179.1 |
179.7 |
| C1 |
C6 |
C5 |
HC6 |
179.7 |
180.2 |
| C6 |
C5 |
C4 |
N3 |
180.0 |
179.7 |
| C4 |
C5 |
C6 |
N4 |
180.8 |
180.4 |
| C6 |
C5 |
N4 |
C8 |
180.4 |
180.3 |
| N4 |
C5 |
C4 |
N3 |
0.8 |
0.0 |
| C4 |
C5 |
N4 |
C6 |
179.3 |
179.6 |
| N4 |
C5 |
C6 |
HC6 |
359.8 |
360.0 |
| N3 |
C8 |
N4 |
C5 |
359.8 |
0.0 |
| C5 |
N4 |
C8 |
C1' |
184.8 |
180.0 |
| HC6 |
C6 |
C1 |
C7 |
358.8 |
359.9 |
| C1 |
C6 |
HC6 |
C5 |
180.3 |
179.8 |
| HC6 |
C6 |
C5 |
N4 |
359.8 |
360.0 |
| C1 |
C7 |
N1 |
N2 |
180.6 |
179.9 |
| N1 |
C7 |
N2 |
HH21 |
182.2 |
359.9 |
| N1 |
C7 |
N2 |
HH22 |
359.3 |
179.7 |
| HH11 |
N1 |
C7 |
HH12 |
181.7 |
180.0 |
| C1 |
C7 |
N2 |
N1 |
179.4 |
180.1 |
| N2 |
C7 |
N1 |
HH11 |
176.5 |
180.1 |
| N2 |
C7 |
N1 |
HH12 |
354.8 |
0.1 |
| HH21 |
N2 |
C7 |
HH22 |
182.9 |
180.2 |
| HH11 |
N1 |
C7 |
N2 |
176.5 |
180.1 |
| C7 |
N1 |
HH11 |
HH12 |
178.4 |
180.0 |
| HH12 |
N1 |
C7 |
N2 |
354.8 |
0.1 |
| C7 |
N1 |
HH12 |
HH11 |
181.7 |
180.0 |
| C7 |
N2 |
HH21 |
HH22 |
177.2 |
179.8 |
| C7 |
N2 |
HH22 |
HH21 |
182.9 |
180.2 |
| C4 |
N3 |
C8 |
HN3 |
180.5 |
180.0 |
| C5 |
N4 |
C8 |
N3 |
359.8 |
0.0 |
| N4 |
C8 |
N3 |
C1' |
184.7 |
180.0 |
| N3 |
C8 |
C1' |
C2' |
194.8 |
140.3 |
| N3 |
C8 |
C1' |
C6' |
14.5 |
320.0 |
| C4 |
N3 |
HN3 |
C8 |
179.3 |
180.0 |
| HN3 |
N3 |
C8 |
N4 |
180.1 |
180.0 |
| HN3 |
N3 |
C8 |
C1' |
355.4 |
360.0 |
| N4 |
C8 |
N3 |
HN3 |
180.1 |
180.0 |
| N3 |
C8 |
N4 |
C1' |
175.1 |
180.0 |
| N4 |
C8 |
C1' |
C2' |
9.7 |
320.3 |
| N4 |
C8 |
C1' |
C6' |
189.5 |
140.0 |
| C1' |
C8 |
N3 |
HN3 |
355.4 |
360.0 |
| N3 |
C8 |
C1' |
N4 |
185.1 |
180.0 |
| C2' |
C1' |
C8 |
C6' |
180.2 |
180.3 |
| C8 |
C1' |
C2' |
C3' |
180.0 |
180.0 |
| C8 |
C1' |
C2' |
HC2' |
359.8 |
359.9 |
| C8 |
C1' |
C6' |
N5' |
180.0 |
179.7 |
| C8 |
C1' |
C6' |
O6' |
0.5 |
0.3 |
| C8 |
C1' |
C2' |
C6' |
179.8 |
179.7 |
| C2' |
C1' |
C6' |
N5' |
359.7 |
359.4 |
| C2' |
C1' |
C6' |
O6' |
180.3 |
180.0 |
| C3' |
C2' |
C1' |
HC2' |
180.2 |
180.1 |
| C1' |
C2' |
C3' |
C4' |
359.8 |
360.0 |
| C1' |
C2' |
C3' |
HC3' |
179.9 |
180.0 |
| C8 |
C1' |
C6' |
C2' |
180.2 |
180.3 |
| C6' |
C1' |
C2' |
C3' |
0.2 |
0.3 |
| C6' |
C1' |
C2' |
HC2' |
180.0 |
180.2 |
| C4' |
N5' |
C6' |
C1' |
0.3 |
0.6 |
| C1' |
C6' |
N5' |
HN5' |
179.9 |
180.3 |
| N5' |
C6' |
C1' |
O6' |
179.4 |
179.4 |
| C3' |
C2' |
C1' |
C6' |
0.2 |
0.3 |
| C1' |
C2' |
C3' |
HC2' |
179.8 |
179.9 |
| C4' |
C3' |
C2' |
HC3' |
179.9 |
180.0 |
| C2' |
C3' |
C4' |
N5' |
0.2 |
0.0 |
| C2' |
C3' |
C4' |
HC4' |
179.8 |
180.0 |
| HC2' |
C2' |
C1' |
C6' |
180.0 |
180.2 |
| C1' |
C2' |
HC2' |
C3' |
180.2 |
180.1 |
| HC2' |
C2' |
C3' |
C4' |
180.0 |
180.1 |
| HC2' |
C2' |
C3' |
HC3' |
0.1 |
0.1 |
| C4' |
C3' |
C2' |
HC2' |
180.0 |
180.1 |
| C2' |
C3' |
C4' |
HC3' |
180.1 |
180.0 |
| N5' |
C4' |
C3' |
HC4' |
180.4 |
180.0 |
| C3' |
C4' |
N5' |
C6' |
359.7 |
359.7 |
| C3' |
C4' |
N5' |
HN5' |
180.1 |
180.0 |
| HC3' |
C3' |
C2' |
HC2' |
0.1 |
0.1 |
| C2' |
C3' |
HC3' |
C4' |
179.9 |
180.0 |
| HC3' |
C3' |
C4' |
N5' |
180.1 |
180.0 |
| HC3' |
C3' |
C4' |
HC4' |
359.7 |
360.0 |
| C1' |
C6' |
N5' |
C4' |
0.3 |
0.6 |
| N5' |
C4' |
C3' |
HC3' |
180.1 |
180.0 |
| C3' |
C4' |
N5' |
HC4' |
179.6 |
180.0 |
| C6' |
N5' |
C4' |
HN5' |
179.6 |
179.7 |
| C4' |
N5' |
C6' |
O6' |
179.7 |
180.0 |
| HC4' |
C4' |
C3' |
HC3' |
359.7 |
360.0 |
| C3' |
C4' |
HC4' |
N5' |
180.4 |
180.0 |
| HC4' |
C4' |
N5' |
C6' |
180.1 |
179.7 |
| HC4' |
C4' |
N5' |
HN5' |
0.5 |
0.0 |
| C1' |
C6' |
N5' |
O6' |
180.6 |
180.6 |
| C6' |
N5' |
C4' |
HC4' |
180.1 |
179.7 |
| C4' |
N5' |
C6' |
HN5' |
180.5 |
180.3 |
| HN5' |
N5' |
C4' |
HC4' |
0.5 |
0.0 |
| C4' |
N5' |
HN5' |
C6' |
179.6 |
179.7 |
| HN5' |
N5' |
C6' |
O6' |
359.3 |
359.7 |
| C1' |
C6' |
O6' |
N5' |
179.4 |
179.4 |
| O6' |
C6' |
N5' |
HN5' |
359.3 |
359.7 |