Atom Nomenclature for 10Z

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 10Z

Atom Name (V3) Atom Name (V2)
C29 C29
O28 O28
C27 C27
C26 C26
N25 N25
C24 C24
C18 C18
C20 C20
C22 C22
C23 C23
C21 C21
C19 C19
N17 N17
C8 C8
N10 N10
C12 C12
C14 C14
C13 C13
C15 C15
C16 C16
C11 C11
C9 C9
N7 N7
C2 C2
C4 C4
C6 C6
N5 N5
C3 C3
C1 C1
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24