Atom Nomenclature for 10P

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 10P

Atom Name (V3) Atom Name (V2)
N22 N22
C3 C3
C4 C4
O24 O24
C2 C2
C1 C1
C5 C5
C9 C9
C6 C6
C8 C8
C7 C7
N23 N23
C10 C10
C11 C11
O25 O25
C14 C14
C15 C15
C16 C16
C12 C12
C13 C13
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
N26 N26
N27 N27
HN22 HN22
HN2A HN2A
H3 H3
H2 H2
H2A H2A
H5 H5
H9 H9
H6 H6
H8 H8
H7 H7
H10 H10
H14 H14
H14A H14A
H15 H15
H15A H15A
H16 H16
H16A H16A
H12 H12
H12A H12A
H17 H17
H18 H18
H18A H18A
H18B H18B
H19 H19
H20 H20
H21 H21
HN26 HN26