PDB Chemical Component 10D
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 10D
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O11 |
P10 |
1.540 |
1.479 |
| O12 |
P8 |
1.511 |
1.481 |
| P10 |
O9 |
1.595 |
1.610 |
| P10 |
O15 |
1.505 |
1.610 |
| P10 |
O14 |
1.449 |
1.610 |
| O13 |
P8 |
1.570 |
1.610 |
| O9 |
P8 |
1.587 |
1.610 |
| P8 |
O7 |
1.532 |
1.609 |
| O7 |
C6 |
1.345 |
1.429 |
| C5 |
C6 |
1.415 |
1.507 |
| C5 |
C3 |
1.276 |
1.310 |
| F2 |
C1 |
1.420 |
1.399 |
| C1 |
C3 |
1.531 |
1.507 |
| C3 |
C4 |
1.551 |
1.508 |
| O14 |
H1 |
0.950 |
0.967 |
| O15 |
H2 |
0.950 |
0.967 |
| O13 |
H3 |
0.950 |
0.967 |
| C6 |
H4 |
1.100 |
1.090 |
| C6 |
H5 |
1.100 |
1.089 |
| C5 |
H6 |
1.080 |
1.080 |
| C4 |
H9 |
1.101 |
1.090 |
| C4 |
H10 |
1.100 |
1.089 |
| C4 |
H11 |
1.100 |
1.090 |
| C1 |
H12 |
1.100 |
1.090 |
| C1 |
H13 |
1.100 |
1.090 |
Bond Angles for 10D
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O11 |
P10 |
O9 |
106.3 |
109.4 |
| O11 |
P10 |
O15 |
113.4 |
109.5 |
| O12 |
P8 |
O7 |
113.8 |
109.5 |
| O15 |
P10 |
O9 |
102.6 |
109.5 |
| P10 |
O9 |
P8 |
134.7 |
134.0 |
| P10 |
O15 |
H2 |
109.5 |
113.9 |
| P10 |
O14 |
H1 |
109.5 |
114.0 |
| O13 |
P8 |
O7 |
102.6 |
109.5 |
| O9 |
P8 |
O7 |
105.4 |
109.5 |
| P8 |
O7 |
C6 |
130.6 |
123.0 |
| O7 |
C6 |
H4 |
110.6 |
109.4 |
| O7 |
C6 |
H5 |
110.6 |
109.4 |
| C5 |
C6 |
H4 |
110.6 |
109.5 |
| C5 |
C6 |
H5 |
110.6 |
109.5 |
| C5 |
C3 |
C4 |
119.6 |
120.0 |
| C3 |
C5 |
H6 |
123.4 |
120.1 |
| F2 |
C1 |
H12 |
110.5 |
109.5 |
| F2 |
C1 |
H13 |
110.5 |
109.5 |
| C3 |
C4 |
H9 |
109.5 |
109.5 |
| C3 |
C4 |
H10 |
109.5 |
109.5 |
| C3 |
C4 |
H11 |
109.5 |
109.4 |
| H4 |
C6 |
H5 |
109.5 |
109.5 |
| H9 |
C4 |
H10 |
109.5 |
109.5 |
| H9 |
C4 |
H11 |
109.5 |
109.5 |
| H10 |
C4 |
H11 |
109.5 |
109.6 |
| H12 |
C1 |
H13 |
109.5 |
109.5 |
Torsion Angles for 10D
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O15 |
P10 |
O11 |
O9 |
248.0 |
120.0 |
| O11 |
P10 |
O9 |
P8 |
100.0 |
320.0 |
| O11 |
P10 |
O15 |
H2 |
0.0 |
60.0 |
| O11 |
P10 |
O14 |
H1 |
360.0 |
180.0 |
| O13 |
P8 |
O12 |
O7 |
125.7 |
120.0 |
| O9 |
P8 |
O12 |
O7 |
247.8 |
240.0 |
| O12 |
P8 |
O7 |
C6 |
344.1 |
55.0 |
| O11 |
P10 |
O9 |
O15 |
240.7 |
120.0 |
| O9 |
P10 |
O15 |
H2 |
245.8 |
180.0 |
| O9 |
P10 |
O14 |
H1 |
122.6 |
60.0 |
| P10 |
O9 |
P8 |
O7 |
74.6 |
200.0 |
| O11 |
P10 |
O15 |
O9 |
114.2 |
240.0 |
| O15 |
P10 |
O9 |
P8 |
219.2 |
200.0 |
| O15 |
P10 |
O14 |
H1 |
233.7 |
300.1 |
| O12 |
P8 |
O13 |
O7 |
229.6 |
240.0 |
| O9 |
P8 |
O13 |
O7 |
111.5 |
120.0 |
| O13 |
P8 |
O7 |
C6 |
207.8 |
295.0 |
| O12 |
P8 |
O9 |
O7 |
118.5 |
120.0 |
| O13 |
P8 |
O9 |
O7 |
250.3 |
240.0 |
| O9 |
P8 |
O7 |
C6 |
93.5 |
175.0 |
| P8 |
O7 |
C6 |
H4 |
55.4 |
300.0 |
| P8 |
O7 |
C6 |
H5 |
176.9 |
60.0 |
| C5 |
C6 |
O7 |
H4 |
240.7 |
240.0 |
| C5 |
C6 |
O7 |
H5 |
119.3 |
120.0 |
| H4 |
C6 |
O7 |
H5 |
238.6 |
240.0 |
| O7 |
C6 |
C5 |
H4 |
119.3 |
120.0 |
| O7 |
C6 |
C5 |
H5 |
240.7 |
240.0 |
| H4 |
C6 |
C5 |
H5 |
121.4 |
120.0 |
| C3 |
C5 |
C6 |
H4 |
162.5 |
104.6 |
| C3 |
C5 |
C6 |
H5 |
41.1 |
344.6 |
| C5 |
C3 |
C4 |
H9 |
180.0 |
85.0 |
| C5 |
C3 |
C4 |
H10 |
300.0 |
204.9 |
| C5 |
C3 |
C4 |
H11 |
60.0 |
325.0 |
| H12 |
C1 |
F2 |
H13 |
238.7 |
120.0 |
| C1 |
C3 |
C5 |
H6 |
6.3 |
354.3 |
| C1 |
C3 |
C4 |
H9 |
351.0 |
265.0 |
| C1 |
C3 |
C4 |
H10 |
111.1 |
24.9 |
| C1 |
C3 |
C4 |
H11 |
231.0 |
145.0 |
| C4 |
C3 |
C5 |
H6 |
179.1 |
174.4 |
| H9 |
C4 |
C3 |
H10 |
240.0 |
240.0 |
| H9 |
C4 |
C3 |
H11 |
120.0 |
120.0 |
| H10 |
C4 |
C3 |
H11 |
240.0 |
239.9 |
| H2 |
O15 |
P10 |
O9 |
245.8 |
180.0 |
| H3 |
O13 |
P8 |
O7 |
130.4 |
300.0 |
| O7 |
C6 |
H4 |
H5 |
122.1 |
120.0 |
| C5 |
C6 |
H4 |
H5 |
237.9 |
239.9 |
| O7 |
C6 |
H5 |
H4 |
237.9 |
240.0 |
| C5 |
C6 |
H5 |
H4 |
122.1 |
120.0 |
| H6 |
C5 |
C6 |
H4 |
342.5 |
284.6 |
| H6 |
C5 |
C6 |
H5 |
221.1 |
164.6 |
| H6 |
C5 |
C3 |
C4 |
179.1 |
174.4 |
| C3 |
C4 |
H9 |
H10 |
120.0 |
120.0 |
| C3 |
C4 |
H9 |
H11 |
240.0 |
240.1 |
| H10 |
C4 |
H9 |
H11 |
120.0 |
120.1 |
| C3 |
C4 |
H10 |
H9 |
240.0 |
240.0 |
| C3 |
C4 |
H10 |
H11 |
120.0 |
120.0 |
| H9 |
C4 |
H10 |
H11 |
240.0 |
239.9 |
| C3 |
C4 |
H11 |
H9 |
120.0 |
119.9 |
| C3 |
C4 |
H11 |
H10 |
240.0 |
240.0 |
| H9 |
C4 |
H11 |
H10 |
120.0 |
120.0 |
| F2 |
C1 |
H12 |
H13 |
121.9 |
240.0 |
| F2 |
C1 |
H13 |
H12 |
238.1 |
120.0 |