PDB Chemical Component 109

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 109

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.385	1.392
C1	C6	1.383	1.395
C1	C8	1.448	1.481
C2	C3	1.395	1.386
C2	H2	1.102	1.080
C3	C4	1.399	1.388
C3	O1	1.348	1.359
C4	C5	1.390	1.382
C4	C7	1.451	1.506
C5	C6	1.380	1.380
C5	H5	1.103	1.080
C6	H6	1.104	1.080
C7	N	1.301	1.467
C7	H71	1.115	1.090
C7	H72	1.115	1.090
C8	N1	1.326	1.378
C8	N2	1.325	1.302
O1	HO1	0.950	0.966
N1	HN11	1.020	0.970
N1	HN12	1.020	0.971
N2	HN2	1.020	0.969
N	CA	1.460	1.468
N	H	1.019	1.008
CA	CB	1.525	1.530
CA	C	1.526	1.505
CA	HA	1.115	1.090
CB	HB1	1.114	1.089
CB	HB2	1.115	1.091
CB	HB3	1.115	1.090
C	O	1.239	1.208
C	OXT	1.289	1.342
OXT	HXT	0.950	0.967

Bond Angles for 109

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	118.9	119.8
C2	C1	C8	120.4	120.1
C1	C2	C3	121.1	119.8
C1	C2	H2	119.1	120.1
C6	C1	C8	120.4	120.1
C1	C6	C5	120.5	120.0
C1	C6	H6	119.9	120.0
C1	C8	N1	120.1	120.0
C1	C8	N2	120.0	120.0
C3	C2	H2	119.8	120.1
C2	C3	C4	119.6	120.0
C2	C3	O1	115.3	120.0
C4	C3	O1	125.0	120.0
C3	C4	C5	118.6	120.2
C3	C4	C7	122.5	119.9
C3	O1	HO1	115.3	106.8
C5	C4	C7	118.9	119.9
C4	C5	C6	121.2	120.2
C4	C5	H5	119.8	119.9
C4	C7	N	124.3	109.5
C4	C7	H71	106.9	109.5
C4	C7	H72	106.9	109.5
C6	C5	H5	119.0	119.9
C5	C6	H6	119.6	120.0
N	C7	H71	107.0	109.5
N	C7	H72	106.9	109.5
C7	N	CA	118.7	106.8
C7	N	H	108.9	106.8
H71	C7	H72	102.8	109.4
N1	C8	N2	119.9	119.9
C8	N1	HN11	120.1	120.0
C8	N1	HN12	108.4	120.0
C8	N2	HN2	119.5	120.1
HN11	N1	HN12	108.4	120.0
CA	N	H	108.9	106.6
N	CA	CB	109.9	109.4
N	CA	C	109.9	109.6
N	CA	HA	109.1	109.5
CB	CA	C	110.1	109.4
CB	CA	HA	108.9	109.4
CA	CB	HB1	109.9	109.5
CA	CB	HB2	112.1	109.5
CA	CB	HB3	112.1	109.5
C	CA	HA	108.9	109.5
CA	C	O	119.2	120.0
CA	C	OXT	115.9	120.1
HB1	CB	HB2	112.1	109.4
HB1	CB	HB3	112.0	109.5
HB2	CB	HB3	98.2	109.4
O	C	OXT	124.9	120.0
C	OXT	HXT	115.9	120.1

Torsion Angles for 109

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	C8	174.6	179.9
C2	C1	C6	C5	359.7	0.0
C2	C1	C6	H6	179.8	180.0
C2	C1	C8	N1	156.1	180.0
C2	C1	C8	N2	336.2	359.9
C3	C2	C1	H2	180.0	179.7
C1	C2	C3	C4	359.8	0.5
C1	C2	C3	O1	179.8	180.0
C2	C1	C6	C8	185.5	180.1
C6	C1	C2	C3	0.3	359.7
C6	C1	C2	H2	180.2	180.0
C6	C1	C8	N1	341.6	0.1
C6	C1	C8	N2	161.8	180.0
C4	C5	C6	C1	0.2	0.0
C1	C6	C5	H5	180.3	180.0
C5	C6	C1	H6	179.9	180.0
C2	C1	C8	C6	174.5	179.9
C8	C1	C2	C3	185.7	179.8
C8	C1	C2	H2	5.7	0.1
C8	C1	C6	C5	174.3	179.9
C8	C1	C6	H6	354.4	359.9
N1	C8	C1	N2	179.9	180.1
C1	C8	N1	HN11	180.0	179.9
C1	C8	N1	HN12	54.7	359.9
C1	C8	N2	HN2	64.9	180.1
C3	C2	C1	C6	0.3	359.7
C3	C2	C1	C8	185.7	179.8
C1	C2	C3	H2	180.0	180.3
C4	C3	C2	O1	180.0	180.5
C2	C3	C4	C5	0.2	359.6
C2	C3	C4	C7	179.9	179.7
C2	C3	O1	HO1	180.1	90.0
H2	C2	C1	C6	180.2	180.0
H2	C2	C1	C8	5.7	0.1
C1	C2	H2	C3	180.0	179.7
H2	C2	C3	C4	179.8	180.2
H2	C2	C3	O1	359.9	359.8
C4	C3	C2	H2	179.8	180.2
C2	C3	C4	O1	180.1	179.5
C4	C3	O1	HO1	0.1	269.5
C5	C4	C3	C7	180.3	179.8
C3	C4	C5	C6	359.8	0.2
C3	C4	C5	H5	179.7	180.2
C3	C4	C7	N	0.1	179.8
C3	C4	C7	H71	125.3	59.7
C3	C4	C7	H72	234.9	299.8
O1	C3	C2	H2	359.9	359.8
C2	C3	O1	C4	179.9	180.5
O1	C3	C4	C5	180.1	180.1
O1	C3	C4	C7	359.9	0.2
C1	C6	C5	C4	0.2	0.0
C5	C4	C3	O1	180.1	180.1
C3	C4	C5	C7	179.7	180.2
C5	C4	C7	N	179.8	359.9
C5	C4	C7	H71	305.1	239.9
C5	C4	C7	H72	54.6	120.0
C6	C5	C4	H5	180.1	180.0
C4	C5	C6	H6	180.2	180.1
C7	C4	C3	O1	359.9	0.2
C3	C4	C7	C5	180.3	179.8
C7	C4	C5	C6	180.1	180.0
C7	C4	C5	H5	0.0	0.0
N	C7	C4	H71	234.7	120.1
N	C7	C4	H72	125.2	240.0
C4	C7	N	CA	180.1	180.0
C4	C7	N	H	54.8	66.2
H71	C7	C4	H72	250.5	119.9
C5	C6	C1	C8	174.3	179.9
C1	C6	C5	H6	180.1	180.0
C6	C5	C4	C7	180.1	180.0
C4	C5	C6	H5	179.9	180.0
H5	C5	C4	C7	0.0	0.0
C4	C5	H5	C6	180.1	180.0
H5	C5	C6	H6	0.2	0.0
H6	C6	C1	C8	354.4	359.9
C1	C6	H6	C5	179.9	180.0
H6	C6	C5	H5	0.2	0.0
C4	C7	N	H71	125.3	240.0
C4	C7	N	H72	234.8	120.0
H71	C7	N	H72	109.5	240.1
CA	N	C7	H	125.3	113.8
C7	N	CA	CB	97.4	90.0
C7	N	CA	C	218.7	209.9
C7	N	CA	HA	338.1	330.1
C4	C7	H71	N	224.8	120.1
C4	C7	H71	H72	112.4	240.0
N	C7	H71	H72	247.6	120.0
H71	C7	N	CA	54.9	300.1
H71	C7	N	H	289.6	186.3
C4	C7	H72	N	135.2	240.0
C4	C7	H72	H71	247.6	120.0
N	C7	H72	H71	112.4	240.0
H72	C7	N	CA	305.3	60.0
H72	C7	N	H	180.1	306.2
C1	C8	N1	N2	180.1	179.9
N1	C8	N2	HN2	245.0	359.9
HN11	N1	C8	HN12	125.4	180.0
C1	C8	N2	N1	179.9	180.1
N2	C8	N1	HN11	359.9	0.1
N2	C8	N1	HN12	234.6	180.0
HN11	N1	C8	N2	359.9	0.1
C8	N1	HN11	HN12	234.7	180.0
HN12	N1	C8	N2	234.6	180.0
C8	N1	HN12	HN11	131.9	180.0
CA	N	C7	H71	54.9	300.1
CA	N	C7	H72	305.3	60.0
C7	N	CA	H	234.7	246.1
CB	CA	N	C	238.6	240.0
CB	CA	N	HA	119.3	119.9
N	CA	CB	HB1	180.0	60.1
N	CA	CB	HB2	305.3	180.1
N	CA	CB	HB3	54.7	300.0
C	CA	N	HA	240.7	239.9
N	CA	C	O	114.5	360.0
N	CA	C	OXT	294.7	180.0
H	N	C7	H71	289.6	186.3
H	N	C7	H72	180.1	306.2
C7	N	H	CA	130.8	113.9
H	N	CA	CB	222.7	203.8
H	N	CA	C	344.0	323.8
H	N	CA	HA	103.3	84.0
CB	CA	N	H	222.7	203.8
N	CA	CB	C	121.2	120.1
N	CA	CB	HA	240.6	240.1
C	CA	CB	HA	119.3	120.0
CB	CA	C	O	235.7	120.0
CB	CA	C	OXT	55.9	300.0
HB1	CB	CA	HB2	234.6	240.0
HB1	CB	CA	HB3	125.3	120.1
HB2	CB	CA	HB3	250.6	240.0
C	CA	N	H	344.0	323.8
N	CA	C	CB	238.8	240.0
N	CA	C	HA	119.4	120.1
CB	CA	C	HA	240.7	240.1
C	CA	CB	HB1	58.7	300.0
C	CA	CB	HB2	184.1	60.0
C	CA	CB	HB3	293.5	179.9
O	C	CA	OXT	179.8	180.0
CA	C	OXT	HXT	180.0	180.0
HA	CA	N	H	103.3	84.0
N	CA	HA	CB	119.9	119.9
N	CA	HA	C	240.0	239.8
CB	CA	HA	C	120.1	119.9
HA	CA	CB	HB1	299.4	180.0
HA	CA	CB	HB2	64.8	300.0
HA	CA	CB	HB3	174.1	59.9
HA	CA	C	O	355.1	239.9
HA	CA	C	OXT	175.3	59.9
HB1	CB	CA	C	58.7	300.0
HB1	CB	CA	HA	299.4	180.0
CA	CB	HB1	HB2	125.3	120.0
CA	CB	HB1	HB3	234.7	239.9
HB2	CB	HB1	HB3	109.4	120.0
HB2	CB	CA	C	184.1	60.0
HB2	CB	CA	HA	64.8	300.0
CA	CB	HB2	HB1	235.8	240.0
CA	CB	HB2	HB3	117.9	120.0
HB1	CB	HB2	HB3	242.1	240.0
HB3	CB	CA	C	293.5	179.9
HB3	CB	CA	HA	174.1	59.9
CA	CB	HB3	HB1	124.1	120.1
CA	CB	HB3	HB2	242.1	240.0
HB1	CB	HB3	HB2	118.0	119.9
O	C	CA	HA	355.1	239.9
CA	C	O	OXT	180.2	180.0
O	C	OXT	HXT	0.2	360.0
OXT	C	CA	HA	175.3	59.9
CA	C	OXT	O	179.8	180.0