PDB Chemical Component 106
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 106
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.364 |
1.343 |
N1 |
C8 |
1.353 |
1.391 |
C2 |
C3 |
1.482 |
1.472 |
C2 |
O11 |
1.228 |
1.218 |
C3 |
C9 |
1.419 |
1.481 |
C3 |
N12 |
1.452 |
1.315 |
C4 |
C5 |
1.488 |
1.381 |
C4 |
C9 |
1.472 |
1.390 |
C4 |
H4 |
1.080 |
1.079 |
C5 |
C6 |
1.488 |
1.386 |
C5 |
BR4 |
1.858 |
1.891 |
C6 |
C7 |
1.475 |
1.381 |
C6 |
H6 |
1.080 |
1.080 |
C7 |
C8 |
1.476 |
1.390 |
C7 |
H7 |
1.080 |
1.080 |
C8 |
C9 |
1.448 |
1.401 |
N12 |
N17 |
1.240 |
1.289 |
N17 |
C19 |
1.355 |
1.396 |
C19 |
C20 |
1.473 |
1.390 |
C19 |
C24 |
1.504 |
1.390 |
C20 |
C21 |
1.468 |
1.381 |
C20 |
H20 |
1.080 |
1.080 |
C21 |
C22 |
1.485 |
1.383 |
C21 |
H21 |
1.080 |
1.080 |
C22 |
C23 |
1.485 |
1.382 |
C22 |
S27 |
1.768 |
1.762 |
C23 |
C24 |
1.460 |
1.380 |
C23 |
H23 |
1.080 |
1.080 |
C24 |
H24 |
1.080 |
1.081 |
S27 |
O28 |
1.437 |
1.421 |
S27 |
O29 |
1.434 |
1.420 |
S27 |
N30 |
1.643 |
1.656 |
N30 |
H301 |
1.000 |
0.969 |
N30 |
H302 |
1.000 |
0.970 |
N1 |
H1 |
1.000 |
0.971 |
N17 |
H2 |
1.000 |
0.971 |
Bond Angles for 106
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C8 |
109.4 |
111.4 |
N1 |
C2 |
C3 |
109.2 |
108.0 |
N1 |
C2 |
O11 |
129.1 |
126.0 |
C2 |
N1 |
H1 |
125.3 |
124.3 |
N1 |
C8 |
C7 |
130.1 |
131.7 |
N1 |
C8 |
C9 |
109.7 |
109.2 |
C8 |
N1 |
H1 |
125.3 |
124.3 |
C3 |
C2 |
O11 |
121.7 |
126.0 |
C2 |
C3 |
C9 |
104.6 |
105.0 |
C2 |
C3 |
N12 |
126.3 |
127.5 |
C9 |
C3 |
N12 |
129.1 |
127.5 |
C3 |
C9 |
C4 |
130.7 |
133.3 |
C3 |
C9 |
C8 |
107.0 |
106.3 |
C3 |
N12 |
N17 |
122.9 |
120.0 |
C5 |
C4 |
C9 |
117.0 |
119.7 |
C5 |
C4 |
H4 |
121.5 |
120.2 |
C4 |
C5 |
C6 |
121.9 |
120.1 |
C4 |
C5 |
BR4 |
119.8 |
120.0 |
C9 |
C4 |
H4 |
121.5 |
120.1 |
C4 |
C9 |
C8 |
122.3 |
120.4 |
C6 |
C5 |
BR4 |
118.2 |
120.0 |
C5 |
C6 |
C7 |
118.4 |
120.6 |
C5 |
C6 |
H6 |
120.8 |
119.7 |
C7 |
C6 |
H6 |
120.8 |
119.7 |
C6 |
C7 |
C8 |
120.1 |
120.1 |
C6 |
C7 |
H7 |
120.0 |
119.9 |
C8 |
C7 |
H7 |
120.0 |
120.0 |
C7 |
C8 |
C9 |
120.2 |
119.1 |
N12 |
N17 |
C19 |
126.2 |
120.0 |
N12 |
N17 |
H2 |
116.9 |
120.0 |
N17 |
C19 |
C20 |
115.6 |
120.1 |
N17 |
C19 |
C24 |
124.3 |
120.0 |
C19 |
N17 |
H2 |
116.9 |
119.9 |
C20 |
C19 |
C24 |
120.0 |
119.9 |
C19 |
C20 |
C21 |
119.6 |
119.9 |
C19 |
C20 |
H20 |
120.2 |
120.1 |
C19 |
C24 |
C23 |
120.4 |
119.9 |
C19 |
C24 |
H24 |
119.8 |
120.1 |
C21 |
C20 |
H20 |
120.2 |
120.1 |
C20 |
C21 |
C22 |
120.3 |
120.1 |
C20 |
C21 |
H21 |
119.9 |
119.9 |
C22 |
C21 |
H21 |
119.9 |
120.0 |
C21 |
C22 |
C23 |
120.6 |
120.1 |
C21 |
C22 |
S27 |
115.8 |
119.9 |
C23 |
C22 |
S27 |
121.9 |
120.0 |
C22 |
C23 |
C24 |
119.2 |
120.1 |
C22 |
C23 |
H23 |
120.4 |
119.9 |
C22 |
S27 |
O28 |
106.0 |
106.4 |
C22 |
S27 |
O29 |
104.4 |
106.4 |
C22 |
S27 |
N30 |
113.0 |
107.2 |
C24 |
C23 |
H23 |
120.4 |
120.0 |
C23 |
C24 |
H24 |
119.8 |
120.0 |
O28 |
S27 |
O29 |
118.1 |
123.1 |
O28 |
S27 |
N30 |
109.1 |
106.4 |
O29 |
S27 |
N30 |
106.4 |
106.4 |
S27 |
N30 |
H301 |
109.5 |
120.0 |
S27 |
N30 |
H302 |
109.4 |
120.0 |
H301 |
N30 |
H302 |
109.5 |
120.0 |
Torsion Angles for 106
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C8 |
C7 |
180.1 |
180.0 |
C2 |
N1 |
C8 |
C9 |
1.4 |
360.0 |
C8 |
N1 |
C2 |
H1 |
180.0 |
180.3 |
C3 |
C2 |
N1 |
O11 |
180.7 |
180.0 |
N1 |
C2 |
C3 |
C9 |
2.7 |
0.0 |
N1 |
C2 |
C3 |
N12 |
181.0 |
180.0 |
C8 |
N1 |
C2 |
C3 |
357.4 |
360.0 |
C8 |
N1 |
C2 |
O11 |
176.8 |
180.0 |
C2 |
N1 |
C8 |
H1 |
180.0 |
179.7 |
C3 |
C9 |
C8 |
N1 |
0.3 |
0.0 |
C4 |
C9 |
C8 |
N1 |
179.4 |
180.0 |
C6 |
C7 |
C8 |
N1 |
179.0 |
180.1 |
N1 |
C8 |
C7 |
H7 |
359.0 |
360.0 |
C7 |
C8 |
N1 |
C9 |
178.7 |
180.0 |
C3 |
C2 |
N1 |
C8 |
357.4 |
360.0 |
N1 |
C2 |
C3 |
O11 |
179.4 |
180.0 |
C3 |
C2 |
N1 |
H1 |
177.4 |
179.7 |
C9 |
C3 |
C2 |
N12 |
181.6 |
180.1 |
C2 |
C3 |
C9 |
C4 |
179.2 |
180.0 |
C2 |
C3 |
C9 |
C8 |
358.2 |
360.0 |
C2 |
C3 |
N12 |
N17 |
35.2 |
0.0 |
O11 |
C2 |
N1 |
C8 |
176.8 |
180.0 |
N1 |
C2 |
O11 |
C3 |
180.7 |
180.0 |
O11 |
C2 |
N1 |
H1 |
356.8 |
359.7 |
O11 |
C2 |
C3 |
C9 |
183.3 |
180.0 |
O11 |
C2 |
C3 |
N12 |
1.7 |
360.0 |
N1 |
C8 |
C9 |
C3 |
0.3 |
0.0 |
C9 |
C3 |
C2 |
O11 |
183.3 |
180.0 |
C2 |
C3 |
C9 |
N12 |
178.3 |
179.9 |
C9 |
C3 |
N12 |
N17 |
213.1 |
180.0 |
C5 |
C4 |
C9 |
C3 |
180.0 |
179.9 |
C3 |
C9 |
C4 |
H4 |
0.0 |
359.9 |
C4 |
C9 |
C3 |
C8 |
181.0 |
180.1 |
C7 |
C8 |
C9 |
C3 |
181.5 |
180.0 |
N12 |
C3 |
C2 |
O11 |
1.7 |
360.0 |
C2 |
C3 |
N12 |
C9 |
182.1 |
180.1 |
N12 |
C3 |
C9 |
C4 |
1.0 |
0.1 |
N12 |
C3 |
C9 |
C8 |
179.9 |
180.0 |
C3 |
N12 |
N17 |
C19 |
166.6 |
180.0 |
C3 |
N12 |
N17 |
H2 |
346.6 |
0.0 |
C3 |
C9 |
C4 |
C5 |
180.0 |
179.9 |
C9 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
C5 |
C4 |
C9 |
C8 |
1.2 |
360.0 |
C6 |
C5 |
C4 |
BR4 |
177.5 |
180.1 |
C4 |
C5 |
C6 |
C7 |
359.2 |
0.0 |
C4 |
C5 |
C6 |
H6 |
179.2 |
180.0 |
N1 |
C8 |
C9 |
C4 |
179.4 |
180.0 |
C4 |
C9 |
C3 |
N12 |
1.0 |
0.1 |
C3 |
C9 |
C4 |
C8 |
178.9 |
179.9 |
C5 |
C4 |
C9 |
H4 |
180.0 |
180.0 |
C9 |
C4 |
C5 |
C6 |
358.9 |
0.0 |
C9 |
C4 |
C5 |
BR4 |
181.5 |
180.0 |
C7 |
C8 |
C9 |
C4 |
0.6 |
359.9 |
C5 |
C4 |
H4 |
C9 |
180.0 |
180.0 |
H4 |
C4 |
C5 |
C6 |
178.9 |
180.0 |
H4 |
C4 |
C5 |
BR4 |
1.5 |
359.9 |
H4 |
C4 |
C9 |
C8 |
181.2 |
180.0 |
C6 |
C5 |
C4 |
C9 |
358.9 |
0.0 |
C6 |
C5 |
C4 |
H4 |
178.9 |
180.0 |
C4 |
C5 |
C6 |
BR4 |
182.5 |
179.9 |
C7 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C5 |
C6 |
C7 |
C8 |
2.5 |
359.9 |
C5 |
C6 |
C7 |
H7 |
182.5 |
180.0 |
BR4 |
C5 |
C4 |
C9 |
181.5 |
180.0 |
BR4 |
C5 |
C4 |
H4 |
1.5 |
359.9 |
C4 |
C5 |
BR4 |
C6 |
177.6 |
180.1 |
BR4 |
C5 |
C6 |
C7 |
176.7 |
180.1 |
BR4 |
C5 |
C6 |
H6 |
356.7 |
0.1 |
N1 |
C8 |
C7 |
C6 |
179.0 |
180.1 |
C7 |
C6 |
C5 |
BR4 |
176.7 |
180.1 |
C5 |
C6 |
C7 |
H6 |
180.0 |
180.0 |
C8 |
C7 |
C6 |
H7 |
180.0 |
179.9 |
C6 |
C7 |
C8 |
C9 |
357.5 |
0.1 |
H6 |
C6 |
C5 |
BR4 |
356.7 |
0.1 |
C5 |
C6 |
H6 |
C7 |
180.0 |
180.0 |
H6 |
C6 |
C7 |
C8 |
182.6 |
179.9 |
H6 |
C6 |
C7 |
H7 |
2.5 |
0.0 |
N1 |
C8 |
C7 |
C9 |
181.5 |
180.0 |
C7 |
C8 |
N1 |
H1 |
0.1 |
0.3 |
C3 |
C9 |
C8 |
C7 |
181.5 |
180.0 |
C4 |
C9 |
C8 |
C7 |
0.6 |
359.9 |
C8 |
C7 |
C6 |
H6 |
182.6 |
179.9 |
C6 |
C7 |
C8 |
H7 |
180.0 |
180.1 |
H7 |
C7 |
C6 |
H6 |
2.5 |
0.0 |
C6 |
C7 |
H7 |
C8 |
180.0 |
179.9 |
H7 |
C7 |
C8 |
C9 |
177.5 |
180.0 |
N1 |
C8 |
C9 |
C7 |
178.8 |
180.0 |
C9 |
C8 |
N1 |
H1 |
181.4 |
180.3 |
C8 |
C9 |
C3 |
N12 |
179.9 |
180.0 |
C3 |
C9 |
C8 |
C4 |
180.9 |
180.1 |
C8 |
C9 |
C4 |
H4 |
181.2 |
180.0 |
C9 |
C8 |
C7 |
H7 |
177.5 |
180.0 |
N12 |
N17 |
C19 |
C20 |
141.8 |
180.0 |
N12 |
N17 |
C19 |
C24 |
318.6 |
359.8 |
C19 |
N17 |
N12 |
H2 |
180.0 |
179.9 |
N12 |
N17 |
C19 |
H2 |
180.0 |
180.1 |
C20 |
C19 |
N17 |
C24 |
183.2 |
180.2 |
N17 |
C19 |
C20 |
C21 |
175.1 |
180.0 |
N17 |
C19 |
C20 |
H20 |
355.1 |
0.1 |
N17 |
C19 |
C24 |
C23 |
184.4 |
179.7 |
N17 |
C19 |
C24 |
H24 |
4.4 |
360.0 |
N17 |
C19 |
C20 |
C24 |
176.9 |
179.8 |
C20 |
C19 |
N17 |
H2 |
321.8 |
359.9 |
C20 |
C19 |
C24 |
C23 |
1.1 |
359.5 |
C20 |
C19 |
C24 |
H24 |
181.1 |
179.7 |
C21 |
C20 |
C19 |
H20 |
180.0 |
179.9 |
C19 |
C20 |
C21 |
C22 |
1.9 |
0.0 |
C19 |
C20 |
C21 |
H21 |
181.9 |
180.0 |
N17 |
C19 |
C24 |
C20 |
183.4 |
180.2 |
C24 |
C19 |
N17 |
H2 |
138.6 |
179.7 |
C24 |
C19 |
C20 |
C21 |
358.2 |
0.2 |
C24 |
C19 |
C20 |
H20 |
178.2 |
180.3 |
C22 |
C23 |
C24 |
C19 |
359.6 |
0.5 |
C19 |
C24 |
C23 |
H23 |
179.6 |
180.4 |
C23 |
C24 |
C19 |
H24 |
180.0 |
179.7 |
C21 |
C20 |
C19 |
C24 |
358.2 |
0.2 |
C19 |
C20 |
C21 |
H20 |
180.0 |
180.1 |
C22 |
C21 |
C20 |
H21 |
180.0 |
180.1 |
C20 |
C21 |
C22 |
C23 |
358.8 |
360.0 |
C20 |
C21 |
C22 |
S27 |
193.5 |
180.0 |
H20 |
C20 |
C19 |
C24 |
178.2 |
180.3 |
C19 |
C20 |
H20 |
C21 |
180.0 |
179.9 |
H20 |
C20 |
C21 |
C22 |
181.9 |
180.0 |
H20 |
C20 |
C21 |
H21 |
1.9 |
359.9 |
C22 |
C21 |
C20 |
H20 |
181.9 |
180.0 |
C20 |
C21 |
C22 |
H21 |
180.0 |
179.9 |
C23 |
C22 |
C21 |
S27 |
165.3 |
180.0 |
C21 |
C22 |
C23 |
C24 |
0.5 |
359.8 |
C21 |
C22 |
C23 |
H23 |
180.5 |
179.9 |
C21 |
C22 |
S27 |
O28 |
64.0 |
203.5 |
C21 |
C22 |
S27 |
O29 |
298.6 |
336.4 |
C21 |
C22 |
S27 |
N30 |
183.5 |
90.0 |
H21 |
C21 |
C20 |
H20 |
1.9 |
359.9 |
C20 |
C21 |
H21 |
C22 |
180.0 |
180.1 |
H21 |
C21 |
C22 |
C23 |
178.8 |
180.0 |
H21 |
C21 |
C22 |
S27 |
13.5 |
0.0 |
C19 |
C24 |
C23 |
C22 |
359.6 |
0.5 |
C23 |
C22 |
C21 |
H21 |
178.8 |
180.0 |
C21 |
C22 |
C23 |
S27 |
195.6 |
180.0 |
C23 |
C22 |
S27 |
O28 |
258.9 |
23.5 |
C23 |
C22 |
S27 |
O29 |
133.5 |
156.4 |
C23 |
C22 |
S27 |
N30 |
18.4 |
270.0 |
C24 |
C23 |
C22 |
H23 |
180.0 |
179.8 |
C22 |
C23 |
C24 |
H24 |
179.6 |
180.3 |
S27 |
C22 |
C21 |
H21 |
13.5 |
0.0 |
C21 |
C22 |
S27 |
C23 |
165.1 |
180.0 |
S27 |
C22 |
C23 |
C24 |
164.9 |
179.7 |
S27 |
C22 |
C23 |
H23 |
344.9 |
359.9 |
O28 |
S27 |
C22 |
O29 |
125.4 |
227.1 |
O28 |
S27 |
C22 |
N30 |
240.5 |
113.5 |
O29 |
S27 |
C22 |
N30 |
115.1 |
246.4 |
C22 |
S27 |
N30 |
H301 |
180.0 |
360.0 |
C22 |
S27 |
N30 |
H302 |
300.0 |
180.0 |
C19 |
C24 |
C23 |
H24 |
180.0 |
180.3 |
C24 |
C23 |
C22 |
S27 |
164.9 |
179.7 |
C22 |
C23 |
C24 |
H23 |
180.0 |
180.2 |
H23 |
C23 |
C22 |
S27 |
344.9 |
359.9 |
C22 |
C23 |
H23 |
C24 |
180.0 |
179.8 |
H23 |
C23 |
C24 |
H24 |
359.6 |
0.1 |
C19 |
C24 |
H24 |
C23 |
180.0 |
179.7 |
H24 |
C24 |
C23 |
H23 |
359.6 |
0.1 |
C22 |
S27 |
O28 |
O29 |
243.5 |
122.9 |
C22 |
S27 |
O28 |
N30 |
122.0 |
245.9 |
O29 |
S27 |
O28 |
N30 |
238.5 |
123.0 |
O28 |
S27 |
N30 |
H301 |
297.7 |
246.5 |
O28 |
S27 |
N30 |
H302 |
57.7 |
66.5 |
C22 |
S27 |
O29 |
O28 |
117.4 |
237.1 |
C22 |
S27 |
O29 |
N30 |
240.3 |
114.1 |
O28 |
S27 |
O29 |
N30 |
122.9 |
237.1 |
O29 |
S27 |
N30 |
H301 |
66.0 |
113.6 |
O29 |
S27 |
N30 |
H302 |
186.1 |
293.6 |
C22 |
S27 |
N30 |
O28 |
242.3 |
113.5 |
C22 |
S27 |
N30 |
O29 |
113.9 |
246.4 |
O28 |
S27 |
N30 |
O29 |
231.6 |
132.9 |
H301 |
N30 |
S27 |
H302 |
240.0 |
180.0 |
S27 |
N30 |
H301 |
H302 |
120.0 |
180.0 |
S27 |
N30 |
H302 |
H301 |
240.0 |
180.0 |
C2 |
N1 |
H1 |
C8 |
180.0 |
180.3 |
H1 |
N1 |
C2 |
C3 |
177.4 |
179.7 |
H1 |
N1 |
C2 |
O11 |
356.8 |
359.7 |
H1 |
N1 |
C8 |
C7 |
0.1 |
0.3 |
H1 |
N1 |
C8 |
C9 |
181.4 |
180.3 |
N12 |
N17 |
H2 |
C19 |
180.0 |
179.9 |
H2 |
N17 |
C19 |
C20 |
321.8 |
359.9 |
H2 |
N17 |
C19 |
C24 |
138.6 |
179.7 |