PDB Chemical Component 101

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 101

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O1P 1.480 1.480
P O2P 1.487 1.610
P O3P 1.488 1.611
P O3' 1.620 1.610
O2P HOP2 0.950 0.966
O3P HOP3 0.950 0.967
O5' C5' 1.422 1.428
O5' HO5' 0.950 0.967
C5' C4' 1.512 1.531
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.089
C4' O4' 1.453 1.445
C4' C3' 1.535 1.550
C4' H4' 1.099 1.089
O4' C1' 1.414 1.437
C3' O3' 1.438 1.429
C3' C2' 1.520 1.548
C3' H3' 1.099 1.089
C2' C1' 1.520 1.541
C2' H2'1 1.099 1.090
C2' H2'2 1.100 1.090
C1' N9 1.468 1.465
C1' H1' 1.100 1.090
N9 C8 1.375 1.363
N9 C4 1.375 1.371
C8 N7 1.312 1.302
C8 H8 1.080 1.080
N7 C5 1.388 1.355
C5 C6 1.410 1.405
C5 C4 1.381 1.405
C6 N6 1.333 1.385
C6 N1 1.356 1.329
N6 HN61 1.000 0.971
N6 HN62 1.000 0.969
N1 C2 1.337 1.320
C2 N3 1.338 1.317
C2 H2 1.080 1.080
N3 C4 1.345 1.329

Bond Angles for 101

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P O2P 119.3 109.5
O1P P O3P 108.1 109.5
O1P P O3' 109.4 109.5
O2P P O3P 107.9 109.4
O2P P O3' 108.1 109.5
P O2P HOP2 109.5 106.8
O3P P O3' 102.9 109.5
P O3P HOP3 109.5 106.8
P O3' C3' 119.8 106.8
C5' O5' HO5' 109.5 106.8
O5' C5' C4' 110.0 109.5
O5' C5' H5'1 109.1 109.5
O5' C5' H5'2 109.3 109.5
C4' C5' H5'1 109.2 109.4
C4' C5' H5'2 109.3 109.5
C5' C4' O4' 109.3 110.7
C5' C4' C3' 114.2 110.6
C5' C4' H4' 105.5 110.5
H5'1 C5' H5'2 109.9 109.5
O4' C4' C3' 106.7 103.6
O4' C4' H4' 113.2 110.6
C4' O4' C1' 109.3 106.9
C3' C4' H4' 108.1 110.6
C4' C3' O3' 112.2 110.9
C4' C3' C2' 103.7 102.1
C4' C3' H3' 112.0 110.9
O4' C1' C2' 105.1 107.4
O4' C1' N9 108.7 109.9
O4' C1' H1' 114.2 109.9
O3' C3' C2' 110.9 110.9
O3' C3' H3' 104.9 110.8
C2' C3' H3' 113.3 111.0
C3' C2' C1' 103.2 104.2
C3' C2' H2'1 113.0 110.5
C3' C2' H2'2 111.6 110.4
C1' C2' H2'1 113.0 110.6
C1' C2' H2'2 111.6 110.5
C2' C1' N9 113.4 109.9
C2' C1' H1' 109.6 109.8
H2'1 C2' H2'2 104.7 110.5
N9 C1' H1' 106.0 109.8
C1' N9 C8 128.4 126.2
C1' N9 C4 125.8 126.3
C8 N9 C4 105.7 107.4
N9 C8 N7 113.7 110.0
N9 C8 H8 123.1 125.0
N9 C4 C5 105.8 106.0
N9 C4 N3 127.4 134.9
N7 C8 H8 123.2 125.0
C8 N7 C5 103.9 109.4
N7 C5 C6 132.1 134.7
N7 C5 C4 110.8 107.2
C6 C5 C4 117.1 118.2
C5 C6 N6 123.5 120.7
C5 C6 N1 117.8 118.5
C5 C4 N3 126.7 119.1
N6 C6 N1 118.7 120.8
C6 N6 HN61 124.9 119.9
C6 N6 HN62 110.3 120.1
C6 N1 C2 118.5 121.2
HN61 N6 HN62 124.9 120.0
N1 C2 N3 129.2 122.5
N1 C2 H2 115.4 118.7
N3 C2 H2 115.4 118.8
C2 N3 C4 110.8 120.6

Torsion Angles for 101

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2P P O1P O3P 123.6 120.0
O2P P O1P O3' 234.9 240.0
O1P P O2P HOP2 296.2 180.0
O3P P O1P O3' 111.3 120.0
O1P P O3P HOP3 224.2 60.0
O1P P O3' C3' 39.0 305.0
O1P P O2P O3P 236.3 240.0
O1P P O2P O3' 125.7 120.0
O3P P O2P O3' 249.4 240.0
O2P P O3P HOP3 94.0 300.0
O2P P O3' C3' 170.3 65.0
O1P P O3P O2P 130.2 120.0
O1P P O3P O3' 244.4 240.0
O2P P O3P O3' 114.1 120.0
O3P P O2P HOP2 59.9 300.0
O3P P O3' C3' 284.3 185.0
O1P P O3' O2P 228.7 240.0
O1P P O3' O3P 114.7 120.0
O2P P O3' O3P 246.0 240.0
O3' P O2P HOP2 170.5 60.0
O3' P O3P HOP3 339.9 180.0
C4' C3' O3' P 204.0 234.2
P O3' C3' C2' 88.5 121.5
P O3' C3' H3' 325.9 357.8
HOP2 O2P P O3P 59.9 300.0
HOP2 O2P P O3' 170.5 60.0
HOP3 O3P P O3' 339.9 180.0
C4' C5' O5' H5'1 119.8 120.0
C4' C5' O5' H5'2 240.0 240.0
O5' C5' C4' O4' 286.9 70.8
O5' C5' C4' C3' 46.3 185.0
O5' C5' C4' H4' 165.0 307.8
H5'1 C5' O5' H5'2 120.2 120.0
HO5' O5' C5' C4' 75.7 180.0
HO5' O5' C5' H5'1 315.9 60.0
HO5' O5' C5' H5'2 195.7 300.0
C4' C5' O5' HO5' 75.7 180.0
O5' C5' C4' H5'1 240.2 240.0
O5' C5' C4' H5'2 120.0 120.0
H5'1 C5' C4' H5'2 239.7 240.0
O4' C4' C5' C3' 240.6 245.8
O4' C4' C5' H4' 122.0 122.9
C5' C4' O4' C1' 135.3 158.5
C3' C4' C5' H4' 241.4 237.1
C5' C4' C3' O3' 130.5 86.1
C5' C4' C3' C2' 250.3 204.3
C5' C4' C3' H3' 12.8 322.5
H5'1 C5' O5' HO5' 315.9 60.0
O5' C5' H5'1 C4' 120.3 120.0
O5' C5' H5'1 H5'2 240.2 240.0
C4' C5' H5'1 H5'2 119.9 120.0
H5'1 C5' C4' O4' 46.7 190.8
H5'1 C5' C4' C3' 166.1 305.0
H5'1 C5' C4' H4' 284.7 67.9
H5'2 C5' O5' HO5' 195.7 300.0
O5' C5' H5'2 C4' 239.5 240.0
O5' C5' H5'2 H5'1 119.7 120.0
C4' C5' H5'2 H5'1 240.2 240.0
H5'2 C5' C4' O4' 167.0 310.7
H5'2 C5' C4' C3' 286.4 64.9
H5'2 C5' C4' H4' 45.0 187.8
O4' C4' C5' H5'1 46.7 190.8
O4' C4' C5' H5'2 167.0 310.7
C5' C4' O4' C3' 123.9 118.6
C5' C4' O4' H4' 242.8 237.1
C3' C4' O4' H4' 118.8 118.5
O4' C4' C3' O3' 251.4 204.8
O4' C4' C3' C2' 11.1 323.0
O4' C4' C3' H3' 133.7 81.2
C4' O4' C1' C2' 330.7 333.6
C4' O4' C1' N9 209.0 214.1
C4' O4' C1' H1' 90.8 93.1
P O3' C3' C4' 204.0 234.2
C3' C4' C5' H5'1 166.1 305.0
C3' C4' C5' H5'2 286.4 64.9
C5' C4' C3' O4' 239.2 241.3
C5' C4' C3' H4' 117.1 122.8
O4' C4' C3' H4' 237.9 241.5
C3' C4' O4' C1' 11.3 39.9
O3' C3' C4' C2' 240.2 241.8
O3' C3' C4' H3' 117.7 123.6
C2' C3' C4' H3' 237.5 241.8
C4' C3' C2' C1' 332.4 20.9
C4' C3' C2' H2'1 210.1 262.2
C4' C3' C2' H2'2 92.4 139.6
H4' C4' C5' H5'1 284.7 67.9
H4' C4' C5' H5'2 45.0 187.8
C5' C4' H4' O4' 119.4 123.0
C5' C4' H4' C3' 237.4 237.1
O4' C4' H4' C3' 118.0 114.1
H4' C4' O4' C1' 252.5 281.4
H4' C4' C3' O3' 13.4 323.3
H4' C4' C3' C2' 133.2 81.5
H4' C4' C3' H3' 255.7 199.7
C1' O4' C4' C3' 11.3 39.9
C1' O4' C4' H4' 252.5 281.4
C3' C2' C1' O4' 35.4 1.9
O4' C1' C2' H2'1 157.7 120.7
O4' C1' C2' H2'2 275.4 243.3
C2' C1' O4' N9 121.7 119.5
C2' C1' O4' H1' 239.9 240.6
N9 C1' O4' H1' 118.1 121.0
O4' C1' N9 C8 50.7 23.2
O4' C1' N9 C4 226.9 203.3
O3' C3' C4' H4' 13.4 323.3
C4' C3' O3' C2' 115.4 112.7
C4' C3' O3' H3' 238.1 236.4
C2' C3' O3' H3' 122.7 123.7
O3' C3' C2' C1' 93.0 139.1
O3' C3' C2' H2'1 330.7 20.4
O3' C3' C2' H2'2 213.0 257.8
C2' C3' C4' H4' 133.2 81.5
C4' C3' C2' O3' 239.4 241.8
C4' C3' C2' H3' 121.7 118.2
O4' C1' C2' C3' 35.4 1.9
O3' C3' C2' H3' 242.3 236.4
C1' C2' C3' H2'1 122.3 118.8
C1' C2' C3' H2'2 240.0 241.4
C3' C2' C1' N9 154.0 121.5
C3' C2' C1' H1' 272.2 242.4
H2'1 C2' C3' H2'2 117.7 122.6
H3' C3' C4' H4' 255.7 199.7
C4' C3' H3' O3' 122.0 123.7
C4' C3' H3' C2' 243.1 247.3
O3' C3' H3' C2' 121.1 123.6
H3' C3' C2' C1' 210.7 262.7
H3' C3' C2' H2'1 88.4 144.0
H3' C3' C2' H2'2 330.7 21.4
O4' C1' C2' N9 241.4 240.4
O4' C1' C2' H1' 123.1 119.5
C1' C2' C3' H3' 210.7 262.7
C3' C2' C1' H2'1 237.7 241.2
C3' C2' C1' H2'2 120.0 118.6
H2'1 C2' C1' H2'2 242.3 237.4
N9 C1' C2' H1' 241.7 239.1
C2' C1' N9 C8 294.2 265.2
C2' C1' N9 C4 110.4 85.3
H2'1 C2' C3' H3' 88.4 144.0
C3' C2' H2'1 C1' 116.6 114.8
C3' C2' H2'1 H2'2 238.3 237.5
C1' C2' H2'1 H2'2 121.7 122.6
H2'1 C2' C1' N9 276.3 240.2
H2'1 C2' C1' H1' 34.5 1.2
H2'2 C2' C3' H3' 330.7 21.4
C3' C2' H2'2 C1' 245.1 245.3
C3' C2' H2'2 H2'1 122.6 122.6
C1' C2' H2'2 H2'1 237.4 237.3
H2'2 C2' C1' N9 34.0 2.9
H2'2 C2' C1' H1' 152.3 123.8
O4' C1' N9 C2' 116.5 118.0
O4' C1' N9 H1' 236.8 238.9
N9 C1' C2' H2'1 276.3 240.2
N9 C1' C2' H2'2 34.0 2.9
C2' C1' N9 H1' 120.3 120.9
C8 N9 C1' C4 183.8 179.9
C1' N9 C8 N7 174.2 180.0
C1' N9 C8 H8 354.2 0.1
C1' N9 C4 C5 186.2 180.2
C1' N9 C4 N3 4.4 360.0
O4' C1' H1' C2' 242.4 242.0
O4' C1' H1' N9 119.7 121.1
H1' C1' C2' H2'1 34.5 1.2
H1' C1' C2' H2'2 152.3 123.8
C2' C1' H1' N9 237.2 239.1
H1' C1' N9 C8 173.8 144.3
H1' C1' N9 C4 350.1 324.4
C8 N9 C1' H1' 173.8 144.3
C1' N9 C8 C4 176.8 180.1
C8 N9 C4 C5 3.1 0.3
C8 N9 C4 N3 181.3 180.0
N7 C8 N9 H8 180.0 179.9
N9 C8 N7 C5 0.9 359.8
C4 N9 C1' H1' 350.1 324.4
C1' N9 C4 C8 183.1 179.9
C4 N9 C8 N7 357.4 359.9
C4 N9 C8 H8 177.4 180.0
N7 C5 C4 N9 357.2 359.6
C6 C5 C4 N9 176.3 180.3
C5 C4 N9 N3 181.8 180.3
C2 N3 C4 N9 183.2 180.0
N7 C8 N9 C4 357.4 359.9
N9 C8 N7 H8 180.0 180.1
C8 N7 C5 C6 182.3 179.5
C8 N7 C5 C4 1.2 0.4
H8 C8 N9 C4 177.4 180.0
N9 C8 H8 N7 180.0 179.9
H8 C8 N7 C5 180.9 179.7
N9 C4 C5 N7 357.2 359.6
C5 N7 C8 H8 180.9 179.7
C6 C5 N7 C4 181.1 179.1
N7 C5 C6 N6 0.5 0.7
N7 C5 C6 N1 180.5 180.5
N7 C5 C4 N3 179.0 179.8
N9 C4 C5 C6 176.3 180.3
N7 C5 C6 C4 178.8 181.0
C6 C5 C4 N3 358.1 0.5
N6 C6 C5 N1 180.1 180.2
C5 C6 N6 HN61 0.0 179.7
C5 C6 N6 HN62 180.0 359.5
C5 C6 N1 C2 359.2 0.2
N9 C4 C5 N3 178.2 179.8
N7 C5 C4 C6 180.9 179.3
C4 C5 C6 N6 181.7 179.7
C4 C5 C6 N1 1.7 359.5
C2 N3 C4 C5 1.0 359.7
N6 C6 C5 C4 181.7 179.7
C5 C6 N6 N1 179.9 179.8
N6 C6 N1 C2 179.2 180.0
HN61 N6 C6 HN62 180.0 180.3
N1 C6 C5 C4 1.7 359.5
C5 C6 N1 N6 180.1 180.2
N1 C6 N6 HN61 180.1 359.9
N1 C6 N6 HN62 0.1 179.7
C6 N1 C2 N3 359.9 0.0
C6 N1 C2 H2 179.9 180.1
HN61 N6 C6 N1 180.1 359.9
C6 N6 HN61 HN62 180.0 179.7
HN62 N6 C6 N1 0.1 179.7
C6 N6 HN62 HN61 180.0 180.3
N3 C2 N1 H2 180.0 179.9
N1 C2 N3 C4 0.0 360.0
N9 C4 N3 C2 183.2 180.0
C5 C4 N3 C2 1.0 359.7
N1 C2 N3 H2 180.0 180.1
N1 C2 H2 N3 180.0 179.9
H2 C2 N3 C4 180.0 179.9
N9 C4 N3 C5 182.2 180.3
C4 N3 C2 H2 180.0 179.9