Atom Nomenclature for 0ZZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0ZZ

Atom Name (V3) Atom Name (V2)
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
O1 O1
C7 C7
BR1 BR1
C1 C1
C C
O O
CH3 CH3
N N
CA CA
C8 C8
O2 O2
CB CB
CG1 CG1
CG2 CG2
N1 N1
CA1 CA1
C9 C9
O3 O3
CB1 CB1
CG CG
OD1 OD1
OD2 OD2
C11 C11
S2 S2
C31 C31
C41 C41
C51 C51
C61 C61
C71 C71
C81 C81
C91 C91
H3 H3
H4 H4
H6 H6
H71 H71
H72 H72
H73 H73
H1 H1
H2 H2
H H
HA HA
HB HB
HG11 HG11
HG12 HG12
HG13 HG13
HG21 HG21
HG22 HG22
HG23 HG23
H5 H5
HA1 HA1
HB2 HB2
HB3 HB3
HD2 HD2
H11 H11
H12 H12
H31 H31
H32 H32
H51 H51
H61 H61
H7 H7
H8 H8
H9 H9
H80 H80
H81 H81