PDB Chemical Component 0ZY

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 0ZY

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O1 C 1.237 1.215
C O2 1.398 1.347
C N 1.329 1.348
O2 CT 1.442 1.452
CT C1 1.559 1.530
CT C2 1.548 1.531
CT C3 1.557 1.529
C1 H11 1.100 1.090
C1 H12 1.100 1.090
C1 H13 1.100 1.090
C2 H21 1.100 1.090
C2 H22 1.100 1.090
C2 H23 1.100 1.089
C3 H31 1.100 1.090
C3 H32 1.100 1.089
C3 H33 1.100 1.090
N CA 1.446 1.465
N H 1.000 0.970
CA C4 1.525 1.507
CA CB 1.523 1.529
CA HA 1.099 1.090
C4 O 1.249 1.213
C4 N1 1.336 1.348
CB HB1 1.100 1.090
CB HB2 1.100 1.090
CB HB3 1.100 1.091
N1 CA1 1.455 1.465
N1 H1 1.000 0.970
CA1 C5 1.528 1.507
CA1 CB1 1.560 1.530
CA1 HA1 1.100 1.090
C5 O3 1.247 1.213
C5 N2 1.338 1.347
CB1 CG1 1.493 1.529
CB1 CG2 1.478 1.531
CB1 HB 1.100 1.090
CG1 HG11 1.100 1.090
CG1 HG12 1.100 1.090
CG1 HG13 1.100 1.090
CG2 HG21 1.100 1.090
CG2 HG22 1.100 1.090
CG2 HG23 1.100 1.090
N2 CA2 1.473 1.465
CA2 B 1.645 1.570
CA2 HA2 1.100 1.091
CB2 CA2 1.549 1.530
CB2 HB4 1.100 1.090
CB2 HBA 1.100 1.090
CG CB2 1.524 1.530
CG HG 1.100 1.090
CG HGA 1.100 1.091
CD CG 1.516 1.530
CD HD 1.100 1.090
CD HDA 1.100 1.090
CE CD 1.520 1.530
CE HE 1.100 1.091
CE HEA 1.100 1.090
NZ CE 1.445 1.469
NZ HNZA 1.000 1.009
NZ HNZ 1.000 1.009
B O4 1.461 1.419
B O21 1.793 1.420
O21 C6 1.522 1.429
C6 H2 1.100 1.090
C6 HC 1.100 1.091
C6 HF 1.100 1.090
HN N2 1.000 0.970
HNZB NZ 1.000 1.009
HO O4 0.949 0.968

Bond Angles for 0ZY

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1 C O2 121.3 120.0
O1 C N 120.2 120.0
O2 C N 118.5 120.0
C O2 CT 129.5 117.0
C N CA 122.9 120.0
C N H 118.6 120.0
O2 CT C1 109.5 109.5
O2 CT C2 113.9 109.4
O2 CT C3 108.7 109.5
C1 CT C2 103.4 109.5
C1 CT C3 113.8 109.5
CT C1 H11 109.5 109.5
CT C1 H12 109.5 109.5
CT C1 H13 109.5 109.5
C2 CT C3 107.5 109.5
CT C2 H21 109.5 109.5
CT C2 H22 109.5 109.4
CT C2 H23 109.4 109.5
CT C3 H31 109.5 109.5
CT C3 H32 109.4 109.5
CT C3 H33 109.5 109.5
H11 C1 H12 109.4 109.5
H11 C1 H13 109.5 109.4
H12 C1 H13 109.5 109.5
H21 C2 H22 109.5 109.5
H21 C2 H23 109.5 109.5
H22 C2 H23 109.5 109.5
H31 C3 H32 109.5 109.5
H31 C3 H33 109.5 109.4
H32 C3 H33 109.5 109.5
CA N H 118.6 120.0
N CA C4 112.8 109.4
N CA CB 110.7 109.5
N CA HA 105.8 109.5
C4 CA CB 107.8 109.5
C4 CA HA 108.8 109.4
CA C4 O 124.3 120.0
CA C4 N1 110.0 120.0
CB CA HA 111.0 109.5
CA CB HB1 109.5 109.5
CA CB HB2 109.4 109.4
CA CB HB3 109.5 109.4
O C4 N1 125.6 120.0
C4 N1 CA1 126.5 120.0
C4 N1 H1 116.8 120.0
HB1 CB HB2 109.5 109.5
HB1 CB HB3 109.4 109.5
HB2 CB HB3 109.5 109.4
CA1 N1 H1 116.8 120.0
N1 CA1 C5 106.8 109.5
N1 CA1 CB1 100.9 109.5
N1 CA1 HA1 120.0 109.5
C5 CA1 CB1 118.6 109.4
C5 CA1 HA1 102.9 109.5
CA1 C5 O3 118.4 120.0
CA1 C5 N2 119.7 120.1
CB1 CA1 HA1 108.6 109.5
CA1 CB1 CG1 116.0 109.5
CA1 CB1 CG2 105.0 109.5
CA1 CB1 HB 108.8 109.5
O3 C5 N2 121.8 119.9
C5 N2 CA2 122.9 120.1
CG1 CB1 CG2 111.2 109.5
CG1 CB1 HB 102.3 109.5
CB1 CG1 HG11 109.5 109.5
CB1 CG1 HG12 109.5 109.5
CB1 CG1 HG13 109.5 109.5
CG2 CB1 HB 113.8 109.4
CB1 CG2 HG21 109.5 109.4
CB1 CG2 HG22 109.5 109.4
CB1 CG2 HG23 109.5 109.5
HG11 CG1 HG12 109.4 109.4
HG11 CG1 HG13 109.4 109.5
HG12 CG1 HG13 109.5 109.5
HG21 CG2 HG22 109.5 109.5
HG21 CG2 HG23 109.4 109.5
HG22 CG2 HG23 109.5 109.5
N2 CA2 B 106.4 109.5
N2 CA2 HA2 115.0 109.5
B CA2 HA2 107.1 109.5
CB2 CA2 B 115.3 109.5
CA2 B O4 110.6 120.0
CA2 B O21 125.7 120.0
CB2 CA2 HA2 106.1 109.4
HB4 CB2 HBA 106.8 109.5
CG CB2 HB4 110.6 109.5
CG CB2 HBA 111.4 109.4
HG CG HGA 110.0 109.5
CD CG HG 109.2 109.5
CD CG HGA 109.1 109.4
HD CD HDA 111.0 109.4
CE CD HD 108.8 109.5
CE CD HDA 108.4 109.5
HE CE HEA 110.0 109.4
NZ CE HE 109.2 109.4
NZ CE HEA 109.1 109.5
HNZ NZ HNZA 109.5 109.5
O4 B O21 114.1 120.0
B O21 C6 101.5 114.0
O21 C6 H2 109.5 109.5
O21 C6 HC 109.5 109.4
O21 C6 HF 109.5 109.5
H2 C6 HC 109.5 109.4
H2 C6 HF 109.5 109.5
HC C6 HF 109.5 109.5

Torsion Angles for 0ZY

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2 C O1 N 178.6 180.3
O1 C O2 CT 24.2 360.0
O1 C N CA 359.9 0.1
O1 C N H 179.9 180.0
O1 C O2 N 181.4 179.7
O2 C N CA 181.2 179.8
O2 C N H 1.3 359.7
C O2 CT C1 51.3 60.1
C O2 CT C2 166.5 180.0
C O2 CT C3 286.4 300.0
O1 C N O2 178.6 180.3
N C O2 CT 202.9 180.3
CA N C H 180.0 180.1
C N CA C4 208.1 205.0
C N CA CB 87.2 85.0
C N CA HA 326.9 324.9
CT O2 C N 202.9 180.3
C1 CT O2 C2 244.7 240.1
C1 CT O2 C3 124.9 120.1
O2 CT C1 H11 329.6 59.9
O2 CT C1 H12 89.5 180.0
O2 CT C1 H13 209.5 300.0
C2 CT O2 C3 240.2 240.0
O2 CT C2 H21 329.1 60.0
O2 CT C2 H22 89.1 180.1
O2 CT C2 H23 209.1 300.0
O2 CT C3 H31 236.2 60.0
O2 CT C3 H32 356.2 180.0
O2 CT C3 H33 116.2 300.1
O2 CT C1 C2 121.8 119.9
O2 CT C1 C3 238.1 239.9
C2 CT C1 C3 116.3 120.0
C1 CT C2 H21 87.9 180.0
C1 CT C2 H22 207.9 300.0
C1 CT C2 H23 327.9 60.0
C1 CT C3 H31 113.9 299.9
C1 CT C3 H32 233.8 60.0
C1 CT C3 H33 353.9 180.0
H11 C1 CT H12 240.0 240.0
H11 C1 CT H13 120.0 120.0
H12 C1 CT H13 240.0 240.0
O2 CT C2 C1 241.2 240.0
O2 CT C2 C3 120.5 120.0
C1 CT C2 C3 239.3 240.0
C2 CT C1 H11 207.8 300.0
C2 CT C1 H12 327.8 60.0
C2 CT C1 H13 87.8 180.1
C2 CT C3 H31 359.9 179.9
C2 CT C3 H32 119.9 300.0
C2 CT C3 H33 239.9 60.0
H21 C2 CT H22 240.0 240.0
H21 C2 CT H23 120.0 120.0
H22 C2 CT H23 240.0 240.1
O2 CT C3 C1 122.3 120.1
O2 CT C3 C2 236.3 240.0
C1 CT C3 C2 113.9 120.0
C3 CT C1 H11 91.5 180.0
C3 CT C1 H12 211.4 300.1
C3 CT C1 H13 331.4 60.1
C3 CT C2 H21 208.6 300.0
C3 CT C2 H22 328.6 60.0
C3 CT C2 H23 88.6 180.0
H31 C3 CT H32 240.0 240.0
H31 C3 CT H33 120.0 119.9
H32 C3 CT H33 240.0 239.9
H11 C1 CT C2 207.8 300.0
H11 C1 CT C3 91.5 180.0
CT C1 H11 H12 120.0 120.0
CT C1 H11 H13 240.0 240.0
H12 C1 H11 H13 120.0 120.0
H12 C1 CT C2 327.8 60.0
H12 C1 CT C3 211.4 300.1
CT C1 H12 H11 240.0 240.0
CT C1 H12 H13 120.0 120.0
H11 C1 H12 H13 240.0 240.0
H13 C1 CT C2 87.8 180.1
H13 C1 CT C3 331.4 60.1
CT C1 H13 H11 120.0 120.0
CT C1 H13 H12 240.0 240.0
H11 C1 H13 H12 120.0 120.0
H21 C2 CT C3 208.6 300.0
CT C2 H21 H22 120.0 120.0
CT C2 H21 H23 240.0 240.0
H22 C2 H21 H23 120.0 120.0
H22 C2 CT C3 328.6 60.0
CT C2 H22 H21 240.0 240.0
CT C2 H22 H23 120.0 120.0
H21 C2 H22 H23 240.0 240.0
H23 C2 CT C3 88.6 180.0
CT C2 H23 H21 120.0 120.0
CT C2 H23 H22 240.0 240.1
H21 C2 H23 H22 120.0 120.0
CT C3 H31 H32 120.0 120.1
CT C3 H31 H33 240.0 240.1
H32 C3 H31 H33 120.1 120.0
CT C3 H32 H31 240.0 240.0
CT C3 H32 H33 120.0 120.1
H31 C3 H32 H33 240.0 240.1
CT C3 H33 H31 120.0 119.9
CT C3 H33 H32 240.0 239.9
H31 C3 H33 H32 120.0 120.0
C N CA H 180.0 179.9
C4 CA N CB 120.9 120.1
C4 CA N HA 241.2 240.1
N CA C4 O 328.4 359.9
N CA C4 N1 147.4 180.0
CB CA N HA 120.3 120.0
N CA CB HB1 359.4 180.0
N CA CB HB2 119.4 300.0
N CA CB HB3 239.4 60.0
C N H CA 180.0 180.1
H N CA C4 28.1 25.1
H N CA CB 267.2 265.0
H N CA HA 146.9 145.0
C4 CA N H 28.1 25.1
N CA C4 CB 237.5 239.9
N CA C4 HA 117.0 119.9
CB CA C4 HA 239.6 240.0
C4 CA CB HB1 235.6 60.0
C4 CA CB HB2 355.6 180.0
C4 CA CB HB3 115.6 300.0
O C4 CA N1 181.0 179.9
CA C4 N1 CA1 180.9 180.0
CA C4 N1 H1 0.9 360.0
CB CA N H 267.2 265.0
N CA CB C4 123.8 120.0
N CA CB HA 242.9 240.0
C4 CA CB HA 119.1 120.0
CB CA C4 O 90.9 120.0
CB CA C4 N1 269.9 300.0
HB1 CB CA HB2 240.0 240.0
HB1 CB CA HB3 120.0 120.0
HB2 CB CA HB3 240.0 240.1
HA CA N H 146.9 145.0
N CA HA C4 238.6 240.1
N CA HA CB 120.1 120.1
C4 CA HA CB 241.6 240.0
HA CA C4 O 211.4 240.0
HA CA C4 N1 30.3 60.1
HA CA CB HB1 116.5 300.0
HA CA CB HB2 236.6 60.1
HA CA CB HB3 356.6 180.0
O C4 CA CB 90.9 120.0
O C4 CA HA 211.4 240.0
CA C4 O N1 178.8 180.1
O C4 N1 CA1 359.8 0.0
O C4 N1 H1 179.9 180.0
N1 C4 CA CB 269.9 300.0
N1 C4 CA HA 30.3 60.1
CA C4 N1 O 181.0 179.9
CA1 N1 C4 H1 180.0 180.0
C4 N1 CA1 C5 287.5 205.0
C4 N1 CA1 CB1 163.0 85.0
C4 N1 CA1 HA1 43.9 325.0
HB1 CB CA HA 116.5 300.0
CA CB HB1 HB2 120.0 120.0
CA CB HB1 HB3 240.0 240.0
HB2 CB HB1 HB3 120.0 120.0
HB2 CB CA HA 236.6 60.1
CA CB HB2 HB1 240.0 240.0
CA CB HB2 HB3 120.0 119.9
HB1 CB HB2 HB3 240.0 240.0
HB3 CB CA HA 356.6 180.0
CA CB HB3 HB1 120.0 120.0
CA CB HB3 HB2 240.0 240.1
HB1 CB HB3 HB2 120.0 120.0
C4 N1 CA1 H1 180.0 180.0
C5 CA1 N1 CB1 124.6 120.0
C5 CA1 N1 HA1 243.7 240.0
N1 CA1 C5 O3 322.1 342.5
N1 CA1 C5 N2 138.3 162.5
CB1 CA1 N1 HA1 119.1 120.0
N1 CA1 CB1 CG1 117.2 65.6
N1 CA1 CB1 CG2 240.4 185.6
N1 CA1 CB1 HB 2.5 305.6
C4 N1 H1 CA1 180.0 180.0
H1 N1 CA1 C5 107.5 25.0
H1 N1 CA1 CB1 343.0 265.0
H1 N1 CA1 HA1 223.8 145.0
C5 CA1 N1 H1 107.5 25.0
N1 CA1 C5 CB1 247.1 240.0
N1 CA1 C5 HA1 127.2 120.0
CB1 CA1 C5 HA1 240.2 240.0
C5 CA1 CB1 CG1 1.0 305.5
C5 CA1 CB1 CG2 124.2 65.6
C5 CA1 CB1 HB 246.4 185.5
O3 C5 CA1 N2 183.8 180.0
CA1 C5 N2 CA2 179.9 185.2
CB1 CA1 N1 H1 343.0 265.0
N1 CA1 CB1 C5 116.2 120.1
N1 CA1 CB1 HA1 233.0 240.0
C5 CA1 CB1 HA1 116.8 120.0
CB1 CA1 C5 O3 75.1 102.6
CB1 CA1 C5 N2 251.3 282.5
CG1 CB1 CA1 CG2 236.8 239.9
CG1 CB1 CA1 HB 114.6 120.0
CA1 CB1 CG1 HG11 321.8 55.8
CA1 CB1 CG1 HG12 81.7 175.8
CA1 CB1 CG1 HG13 201.8 295.8
CG2 CB1 CA1 HB 237.8 240.1
CA1 CB1 CG2 HG21 231.6 300.3
CA1 CB1 CG2 HG22 351.6 60.3
CA1 CB1 CG2 HG23 111.6 180.4
HA1 CA1 N1 H1 223.8 145.0
N1 CA1 HA1 C5 241.6 240.0
N1 CA1 HA1 CB1 115.2 120.0
C5 CA1 HA1 CB1 233.5 240.1
HA1 CA1 C5 O3 194.9 222.5
HA1 CA1 C5 N2 11.1 42.5
HA1 CA1 CB1 CG1 244.2 185.6
HA1 CA1 CB1 CG2 7.4 305.6
HA1 CA1 CB1 HB 129.6 65.6
O3 C5 CA1 CB1 75.1 102.6
O3 C5 CA1 HA1 194.9 222.5
CA1 C5 O3 N2 176.1 180.0
O3 C5 N2 CA2 356.0 5.2
N2 C5 CA1 CB1 251.3 282.5
N2 C5 CA1 HA1 11.1 42.5
CA1 C5 N2 O3 183.9 180.0
C5 N2 CA2 B 260.3 255.7
C5 N2 CA2 HA2 18.6 15.7
CG1 CB1 CA1 HA1 244.2 185.6
CA1 CB1 CG1 CG2 119.9 120.1
CA1 CB1 CG1 HB 241.7 240.0
CG2 CB1 CG1 HB 121.8 119.9
CG1 CB1 CG2 HG21 357.7 60.4
CG1 CB1 CG2 HG22 117.8 180.3
CG1 CB1 CG2 HG23 237.8 300.4
HG11 CG1 CB1 HG12 240.0 240.0
HG11 CG1 CB1 HG13 120.0 120.0
HG12 CG1 CB1 HG13 240.0 240.0
CG2 CB1 CA1 HA1 7.4 305.6
CA1 CB1 CG2 CG1 233.8 240.0
CA1 CB1 CG2 HB 118.9 120.0
CG1 CB1 CG2 HB 245.1 240.0
CG2 CB1 CG1 HG11 201.9 295.8
CG2 CB1 CG1 HG12 321.9 55.7
CG2 CB1 CG1 HG13 81.9 175.8
HG21 CG2 CB1 HG22 240.0 240.0
HG21 CG2 CB1 HG23 120.0 120.0
HG22 CG2 CB1 HG23 240.0 239.9
HB CB1 CA1 HA1 129.6 65.6
CA1 CB1 HB CG1 123.2 120.0
CA1 CB1 HB CG2 243.3 240.0
CG1 CB1 HB CG2 120.0 120.0
HB CB1 CG1 HG11 80.0 175.9
HB CB1 CG1 HG12 200.0 295.8
HB CB1 CG1 HG13 320.1 55.8
HB CB1 CG2 HG21 112.7 180.4
HB CB1 CG2 HG22 232.7 300.3
HB CB1 CG2 HG23 352.7 60.4
HG11 CG1 CB1 CG2 201.9 295.8
HG11 CG1 CB1 HB 80.0 175.9
CB1 CG1 HG11 HG12 120.0 120.0
CB1 CG1 HG11 HG13 240.0 240.0
HG12 CG1 HG11 HG13 120.0 120.0
HG12 CG1 CB1 CG2 321.9 55.7
HG12 CG1 CB1 HB 200.0 295.8
CB1 CG1 HG12 HG11 240.0 240.0
CB1 CG1 HG12 HG13 120.0 120.0
HG11 CG1 HG12 HG13 240.0 240.0
HG13 CG1 CB1 CG2 81.9 175.8
HG13 CG1 CB1 HB 320.1 55.8
CB1 CG1 HG13 HG11 120.0 120.0
CB1 CG1 HG13 HG12 240.0 240.0
HG11 CG1 HG13 HG12 120.0 119.9
HG21 CG2 CB1 HB 112.7 180.4
CB1 CG2 HG21 HG22 120.0 119.9
CB1 CG2 HG21 HG23 240.0 240.0
HG22 CG2 HG21 HG23 120.0 120.1
HG22 CG2 CB1 HB 232.7 300.3
CB1 CG2 HG22 HG21 239.9 240.1
CB1 CG2 HG22 HG23 120.0 120.0
HG21 CG2 HG22 HG23 240.1 240.0
HG23 CG2 CB1 HB 352.7 60.4
CB1 CG2 HG23 HG21 120.0 120.0
CB1 CG2 HG23 HG22 240.0 240.0
HG21 CG2 HG23 HG22 120.0 120.0
B CA2 N2 HA2 241.7 240.0
CB2 CA2 N2 B 236.1 240.0
N2 CA2 B O4 47.9 304.1
N2 CA2 B O21 191.7 124.2
CB2 CA2 N2 HA2 117.8 120.0
N2 CA2 B HA2 123.5 120.0
CB2 CA2 B HA2 242.3 240.0
O4 B CA2 O21 216.2 179.9
CA2 B O21 C6 219.9 5.0
N2 CA2 HA2 B 242.1 240.0
CB2 CA2 HA2 B 123.6 120.0
HA2 CA2 B O4 284.5 184.1
HA2 CA2 B O21 68.3 4.2
N2 CA2 CB2 B 118.3 120.0
N2 CA2 CB2 HA2 236.5 240.0
B CA2 CB2 HA2 118.3 120.0
CB2 CA2 B O4 166.7 64.2
CB2 CA2 B O21 310.6 244.2
HB4 CB2 CA2 B 295.0 185.2
HB4 CB2 CA2 HA2 176.8 65.2
CG CB2 HB4 HBA 238.6 240.0
HBA CB2 CA2 B 53.7 305.2
HBA CB2 CA2 HA2 295.4 185.2
CG CB2 HBA HB4 120.9 120.0
CG CB2 CA2 B 175.0 65.1
CG CB2 CA2 HA2 56.8 305.2
HB4 CB2 CG HBA 118.7 120.0
HG CG CB2 HB4 180.7 184.7
HG CG CB2 HBA 62.1 64.7
CD CG HG HGA 240.3 240.1
HGA CG CB2 HB4 301.0 304.8
HGA CG CB2 HBA 182.4 184.8
CD CG HGA HG 119.8 120.0
CD CG CB2 HB4 60.8 64.7
CD CG CB2 HBA 302.1 304.7
HG CG CD HGA 120.3 120.0
HD CD CG HG 193.0 180.0
HD CD CG HGA 72.7 60.0
CE CD HD HDA 240.8 240.0
HDA CD CG HG 313.8 299.9
HDA CD CG HGA 193.5 180.0
CE CD HDA HD 119.5 120.0
CE CD CG HG 73.0 60.0
CE CD CG HGA 312.7 300.0
HD CD CE HDA 120.8 119.9
HE CE CD HD 180.5 180.0
HE CE CD HDA 59.7 60.0
NZ CE HE HEA 240.3 240.0
HEA CE CD HD 300.8 299.9
HEA CE CD HDA 180.0 180.0
NZ CE HEA HE 119.8 120.0
NZ CE CD HD 60.5 60.0
NZ CE CD HDA 299.7 300.1
HE CE NZ HEA 120.3 120.0
HNZA NZ CE HE 238.2 300.0
HNZA NZ CE HEA 117.9 180.1
HNZ NZ CE HE 358.2 180.0
HNZ NZ CE HEA 237.9 60.0
O4 B CA2 HA2 284.5 184.1
CA2 B O4 O21 148.3 180.1
O4 B O21 C6 2.7 185.1
O21 B CA2 HA2 68.3 4.2
CA2 B O21 O4 217.2 179.9
B O21 C6 H2 32.7 55.1
B O21 C6 HC 152.7 175.0
B O21 C6 HF 272.7 295.0
H2 C6 O21 HC 240.0 240.1
H2 C6 O21 HF 120.0 120.1
HC C6 O21 HF 240.0 240.0
O21 C6 H2 HC 120.0 119.9
O21 C6 H2 HF 240.0 240.0
HC C6 H2 HF 120.0 120.0
O21 C6 HC H2 240.0 240.0
O21 C6 HC HF 120.0 120.0
H2 C6 HC HF 240.0 240.0
O21 C6 HF H2 120.0 120.0
O21 C6 HF HC 240.0 240.0
H2 C6 HF HC 120.0 120.0
HN N2 CA2 HA2 198.6 195.7
HNZB NZ CE HE 118.2 60.0
HNZB NZ CE HEA 357.9 300.0