Atom Nomenclature for 0ZS

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0ZS

Atom Name (V3) Atom Name (V2)
O1 O1
C C1
O2 O2
CT C2
C1 C3
C2 C4
C3 C5
N1 N2
CA1 C15
C5 C16
OXT O6
CB1 C17
CG1 C18
CD11 C19
CD21 C20
CE11 C21
CE21 C22
CZ1 C23
CM C24
N N1
CA C6
C4 C7
O O4
CB C8
CG C9
CD1 C10
CD2 C11
CE1 C12
CE2 C13
CZ C14
N2 N3
CA2 C25
C6 C26
O3 O7
CB2 C27
CG2 C28
CD C29
OE1 O8
OE2 O9
N3 N4
CA3 C30
C7 C31
O4 O11
CB3 C32
CG3 C33
CD12 C34
CD22 C35
CE12 C36
CE22 C37
CZ2 C38
N4 N5
H11 H1
H12 H2
H13 H3
H21 H4
H22 H5
H23 H6
H31 H7
H32 H8
H33 H9
H1 H22
HA1 H24
HC H25
HOR H26
HB21 H27
HB31 H28
HD11 H29
HD21 H30
HE11 H31
HE21 H32
HZ1 H33
HM1 H34
HM2 H35
H H11
HA H13
HB2 H14
HB3 H15
HD1 H16
HD2 H17
HE1 H18
HE2 H19
HZ H20
H2 H37
HA2 H39
HB22 H40
HB32 H41
HG2 H42
HG3 H43
HE22 H44
H3 H46
HA3 H48
HB23 H49
HB33 H50
HD12 H51
HD22 H52
HE12 H53
HE23 H54
HZ2 H55
HN1 H57
HN2 H58