Atom Nomenclature for 0ZR

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0ZR

Atom Name (V3) Atom Name (V2)
O1 O1
C C1
O2 O2
CT C2
C1 C3
C2 C4
C3 C5
N N1
CA C6
C4 C7
OS O4
CB C8
CG C9
CD1 C10
CD2 C11
CE1 C12
CE2 C13
CZ C14
CM C15
N1 N2
CA1 C16
C5 C17
O O5
CB1 C18
CG1 C19
CD11 C20
CD21 C21
CE11 C22
CE21 C23
CZ1 C24
N2 N3
CA2 C25
C6 C26
O3 O7
CB2 C27
CG2 C28
CD C29
OE1 O8
NE2 N4
N3 N5
CA3 C30
C7 C31
O4 O10
CB3 C32
CG3 C33
CD12 C34
CD22 C35
CE12 C36
CE22 C37
CZ2 C38
N4 N6
H11 H1
H12 H2
H13 H3
H21 H4
H22 H5
H23 H6
H31 H7
H32 H8
H33 H9
H H11
HA H13
HC H14
HOS H15
HB1 H16
HB2 H17
HD1 H18
HD2 H19
HE1 H20
HE2 H21
HZ H22
HM1 H23
HM2 H24
H1 H26
HA1 H28
HB21 H29
HB3 H30
HD11 H31
HD21 H32
HE11 H33
HE21 H34
HZ1 H35
H2 H37
HA2 H39
HB22 H40
HB31 H41
HG2 H42
HG3 H43
HE22 H44
HE23 H45
H3 H47
HA3 H49
HB23 H50
HB32 H51
HD12 H52
HD22 H53
HE12 H54
HE24 H55
HZ2 H56
HN1 H58
HN2 H59