Atom Nomenclature for 0ZP

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0ZP

Atom Name (V3) Atom Name (V2)
C C1
O O2
CA C2
CB1 C3
C1A C4
C2A C5
C3A C6
C4A C7
C11 C8
C5A C9
C6A C10
C7A C11
C8A C12
C12 C13
CB2 C14
C1B C15
C2B C16
C3B C17
C4B C18
C13 C19
C5B C20
C6B C21
C7B C22
C8B C23
C14 C24
N N1
CA1 C25
C1 C26
O1 O3
CB C27
CG C28
ND1 N2
CD2 C29
CE1 C30
NE2 N3
N1 N4
CA2 C31
CB3 C32
CG1 C33
CD1 C34
CD21 C35
CE11 C36
CE2 C37
CZ C38
CH C39
OH O5
CM C40
CA21 C41
CB21 C42
CG2 C43
CD3 C44
CD4 C45
C2 C46
O2 O6
N2 N5
CA3 C47
CB4 C48
CG11 C49
CG21 C50
CD11 C51
HA H2
HB11 H3
HB12 H4
H2A H5
H3A H6
H4A H7
H5A H8
H6A H9
H7A H10
H8A H11
HB21 H12
HB22 H13
H2B H14
H3B H15
H4B H16
H5B H17
H6B H18
H7B H19
H8B H20
H H21
HA1 H23
HB2 H24
HB3 H25
HD1 H26
HD2 H27
HE1 H28
HE2 H29
H1 H31
HA2 H33
HB23 H34
HB31 H35
HG H36
HD12 H37
HD13 H38
HD23 H39
HD22 H40
HE12 H41
HE13 H42
HE23 H43
HE22 H44
HZ2 H45
HZ3 H46
HH H47
HO H48
HM1 H49
HM2 H50
HA21 H51
HB24 H52
HB25 H53
HG2 H54
HD31 H55
HD32 H56
HD33 H57
HD41 H58
HD42 H59
HD43 H60
HN1 H62
HA11 H64
HA22 H65
HB H66
HG11 H67
HG12 H68
HG21 H69
HG22 H70
HG23 H71
HD11 H72
HD21 H73
HD3 H74