Atom Nomenclature for 0ZL

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0ZL

Atom Name (V3) Atom Name (V2)
C3 C1
C4 C2
O2 O1
C1 C3
O1 O2
N N1
CA C4
C C5
O O3
CB C6
CG C7
CD1 C8
CD2 C9
N1 N2
CA1 C10
C2 C11
O3 O5
CB1 C12
CG1 C13
CD11 C14
CD21 C15
C11 C16
N2 N3
C21 C17
O21 O7
C31 C18
O31 O8
C41 C19
C5 C20
C6 C21
C7 C22
C7' C23
C1' C24
C2' C25
C6' C26
C3' C27
C5' C28
C4' C29
H31 H1
H32 H2
H33 H3
H41 H4
H42 H5
H H6
HA H7
HBC1 H8
HBC2 H9
HG H11
HD11 H12
HD12 H13
HD13 H14
HD21 H15
HD22 H16
HD23 H17
H1 H18
HA1 H20
HB2 H21
HB3 H22
HG1 H23
HD14 H24
HD15 H25
HD16 H26
HD24 H27
HD25 H28
HD26 H29
H11 H31
HN2 H33
H2 H34
HO2 H35
H3 H36
HO3 H37
H411 H38
H421 H39
H5 H40
H61 H41
H62 H42
H63 H43
H71 H44
H72 H45
H73 H46
H7'1 H47
H7'2 H48
H1' H49
H2'1 H50
H2'2 H51
H6'1 H52
H6'2 H53
H3'1 H54
H3'2 H55
H5'1 H56
H5'2 H57
H4'1 H58
H4'2 H59