Atom Nomenclature for 0ZI

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0ZI

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C4A C5
C5 C6
C6 C7
C7 C8
C8 C9
C8A C10
N N1
CM1 C11
CM2 C12
S S1
O1S O1
O2S O2
N1 N2
CA C13
C C14
O O4
CB C15
CG C16
CD C17
NE N3
CZ C18
NH1 N4
NH2 N5
N11 N6
C21 C19
C31 C20
C41 C21
C51 C22
C61 C23
C1' C24
C2' C25
H2 H1
H3 H2
H4 H3
H6 H4
H7 H5
H8 H6
HM11 H7
HM12 H8
HM13 H9
HM21 H10
HM22 H11
HM23 H12
H H14
HA H16
HB2 H17
HB3 H18
HG2 H19
HG3 H20
HD2 H21
HD3 H22
HE H23
HH11 H24
HH12 H25
HH21 H26
HH22 H27
H21 H30
H22 H31
H31 H32
H32 H33
H41 H34
H51 H35
H52 H36
H61 H37
H62 H38
H1'1 H39
H1'2 H40
H2'1 H41
H2'2 H42
H2'3 H43