PDB Chemical Component 0Y7
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0Y7
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C9 |
O4 |
1.416 |
1.429 |
C9 |
C8 |
1.525 |
1.529 |
C10 |
C8 |
1.534 |
1.530 |
C10 |
C23 |
1.521 |
1.529 |
C8 |
N1 |
1.500 |
1.465 |
O1 |
C11 |
1.222 |
1.213 |
C11 |
N1 |
1.353 |
1.334 |
C11 |
C12 |
1.571 |
1.501 |
N1 |
C7 |
1.480 |
1.458 |
C12 |
C15 |
1.516 |
1.530 |
C12 |
C13 |
1.543 |
1.531 |
C7 |
C6 |
1.480 |
1.507 |
C7 |
C16 |
1.582 |
1.528 |
C5 |
C6 |
1.403 |
1.382 |
C5 |
C4 |
1.394 |
1.383 |
C6 |
C3 |
1.409 |
1.383 |
C4 |
C1 |
1.404 |
1.384 |
C15 |
C16 |
1.507 |
1.533 |
C13 |
C14 |
1.543 |
1.507 |
O3 |
C14 |
1.341 |
1.208 |
C3 |
C2 |
1.395 |
1.382 |
C16 |
C17 |
1.511 |
1.507 |
C1 |
C2 |
1.401 |
1.384 |
C1 |
CL1 |
1.736 |
1.736 |
C14 |
O2 |
1.205 |
1.342 |
C18 |
C17 |
1.415 |
1.382 |
C18 |
C19 |
1.394 |
1.383 |
C17 |
C22 |
1.409 |
1.383 |
C19 |
C20 |
1.395 |
1.382 |
C22 |
C21 |
1.387 |
1.383 |
C20 |
C21 |
1.400 |
1.384 |
C21 |
CL2 |
1.692 |
1.736 |
C2 |
H1 |
1.080 |
1.080 |
C3 |
H2 |
1.080 |
1.080 |
C4 |
H3 |
1.080 |
1.080 |
C5 |
H4 |
1.080 |
1.079 |
C7 |
H5 |
1.100 |
1.090 |
C8 |
H6 |
1.100 |
1.090 |
C9 |
H7 |
1.100 |
1.091 |
C9 |
H8 |
1.100 |
1.090 |
O4 |
H9 |
0.950 |
0.967 |
C12 |
H10 |
1.100 |
1.090 |
C13 |
H11 |
1.100 |
1.090 |
C13 |
H12 |
1.100 |
1.090 |
O2 |
H13 |
0.951 |
0.967 |
C15 |
H14 |
1.100 |
1.090 |
C15 |
H15 |
1.100 |
1.089 |
C16 |
H16 |
1.100 |
1.091 |
C18 |
H17 |
1.080 |
1.080 |
C19 |
H18 |
1.080 |
1.080 |
C20 |
H19 |
1.080 |
1.080 |
C22 |
H20 |
1.080 |
1.080 |
C10 |
H21 |
1.100 |
1.091 |
C10 |
H22 |
1.100 |
1.090 |
C23 |
H23 |
1.101 |
1.089 |
C23 |
H24 |
1.100 |
1.090 |
C23 |
H25 |
1.100 |
1.090 |
Bond Angles for 0Y7
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O4 |
C9 |
H7 |
109.5 |
109.4 |
O4 |
C9 |
H8 |
109.5 |
109.5 |
C9 |
O4 |
H9 |
109.5 |
114.0 |
C9 |
C8 |
H6 |
106.8 |
109.5 |
C10 |
C8 |
H6 |
106.7 |
109.4 |
C23 |
C10 |
H21 |
107.4 |
109.5 |
C23 |
C10 |
H22 |
107.4 |
109.5 |
C10 |
C23 |
H23 |
109.5 |
109.5 |
C10 |
C23 |
H24 |
109.4 |
109.5 |
C10 |
C23 |
H25 |
109.5 |
109.5 |
O1 |
C11 |
C12 |
118.7 |
118.3 |
C11 |
C12 |
C15 |
115.5 |
109.9 |
C11 |
C12 |
C13 |
111.1 |
109.4 |
C11 |
C12 |
H10 |
106.1 |
109.4 |
N1 |
C7 |
C16 |
116.8 |
110.5 |
N1 |
C7 |
H5 |
105.0 |
109.1 |
C13 |
C12 |
C15 |
110.4 |
109.4 |
C12 |
C15 |
C16 |
109.8 |
108.4 |
C15 |
C12 |
H10 |
106.7 |
109.4 |
C12 |
C15 |
H14 |
109.4 |
109.6 |
C12 |
C15 |
H15 |
109.4 |
109.7 |
C12 |
C13 |
C14 |
107.7 |
109.5 |
C13 |
C12 |
H10 |
106.4 |
109.3 |
C12 |
C13 |
H11 |
109.9 |
109.4 |
C12 |
C13 |
H12 |
109.9 |
109.4 |
C7 |
C16 |
C15 |
111.5 |
108.7 |
C7 |
C16 |
C17 |
113.9 |
109.6 |
C16 |
C7 |
H5 |
104.0 |
109.3 |
C7 |
C16 |
H16 |
105.8 |
109.6 |
C6 |
C5 |
H4 |
120.1 |
120.0 |
C5 |
C4 |
H3 |
120.3 |
120.0 |
C6 |
C3 |
H2 |
120.3 |
120.0 |
C15 |
C16 |
C17 |
111.9 |
109.6 |
C16 |
C15 |
H14 |
109.4 |
109.7 |
C16 |
C15 |
H15 |
109.4 |
109.7 |
C15 |
C16 |
H16 |
106.6 |
109.6 |
C13 |
C14 |
O2 |
126.7 |
120.0 |
C14 |
C13 |
H11 |
109.9 |
109.4 |
C14 |
C13 |
H12 |
109.9 |
109.5 |
C3 |
C2 |
H1 |
120.3 |
120.0 |
C16 |
C17 |
C22 |
118.8 |
120.0 |
C17 |
C16 |
H16 |
106.5 |
109.7 |
C1 |
C2 |
H1 |
120.2 |
120.0 |
C14 |
O2 |
H13 |
109.5 |
117.0 |
C18 |
C17 |
C22 |
119.3 |
120.0 |
C18 |
C19 |
C20 |
120.6 |
120.0 |
C19 |
C18 |
H17 |
120.0 |
120.0 |
C18 |
C19 |
H18 |
119.7 |
120.0 |
C17 |
C22 |
C21 |
119.4 |
119.9 |
C17 |
C22 |
H20 |
120.3 |
120.1 |
C19 |
C20 |
C21 |
119.1 |
120.0 |
C20 |
C19 |
H18 |
119.7 |
120.1 |
C19 |
C20 |
H19 |
120.5 |
120.0 |
C20 |
C21 |
CL2 |
119.3 |
120.0 |
C21 |
C20 |
H19 |
120.5 |
120.1 |
H7 |
C9 |
H8 |
109.5 |
109.5 |
H11 |
C13 |
H12 |
109.4 |
109.5 |
H14 |
C15 |
H15 |
109.4 |
109.7 |
H21 |
C10 |
H22 |
109.4 |
109.4 |
H23 |
C23 |
H24 |
109.5 |
109.5 |
H23 |
C23 |
H25 |
109.4 |
109.5 |
H24 |
C23 |
H25 |
109.5 |
109.5 |
Torsion Angles for 0Y7
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O4 |
C9 |
C8 |
H6 |
312.5 |
305.0 |
H7 |
C9 |
O4 |
H8 |
240.0 |
120.0 |
C10 |
C8 |
C9 |
H6 |
245.0 |
240.0 |
C9 |
C8 |
C10 |
H6 |
115.1 |
120.0 |
C23 |
C10 |
C8 |
H6 |
28.4 |
82.9 |
H21 |
C10 |
C23 |
H22 |
117.6 |
120.0 |
H23 |
C23 |
C10 |
H24 |
240.0 |
240.0 |
H23 |
C23 |
C10 |
H25 |
120.0 |
120.0 |
H24 |
C23 |
C10 |
H25 |
240.0 |
240.0 |
C8 |
N1 |
C7 |
C16 |
186.1 |
199.1 |
C8 |
N1 |
C7 |
H5 |
71.5 |
78.9 |
O1 |
C11 |
C12 |
C15 |
199.5 |
197.6 |
O1 |
C11 |
C12 |
C13 |
72.7 |
77.4 |
O1 |
C11 |
C12 |
H10 |
317.5 |
317.8 |
C11 |
N1 |
C7 |
C16 |
6.3 |
19.1 |
C11 |
N1 |
C7 |
H5 |
251.7 |
258.8 |
C13 |
C12 |
C11 |
C15 |
233.2 |
239.9 |
C11 |
C12 |
C15 |
C16 |
311.7 |
311.2 |
C15 |
C12 |
C11 |
H10 |
242.0 |
239.8 |
C11 |
C12 |
C15 |
H14 |
71.8 |
70.8 |
C11 |
C12 |
C15 |
H15 |
191.7 |
191.4 |
C11 |
C12 |
C13 |
C14 |
195.5 |
295.0 |
C13 |
C12 |
C11 |
H10 |
115.2 |
119.7 |
C11 |
C12 |
C13 |
H11 |
315.2 |
55.0 |
C11 |
C12 |
C13 |
H12 |
75.7 |
175.0 |
N1 |
C7 |
C16 |
C15 |
323.9 |
309.2 |
N1 |
C7 |
C16 |
C17 |
196.1 |
189.5 |
C16 |
C7 |
N1 |
H5 |
114.6 |
120.2 |
N1 |
C7 |
C16 |
H16 |
79.4 |
69.0 |
C11 |
C12 |
C15 |
C13 |
232.8 |
239.9 |
C11 |
C12 |
C15 |
H10 |
117.7 |
120.2 |
C15 |
C12 |
C13 |
C14 |
65.9 |
174.6 |
C13 |
C12 |
C15 |
H10 |
244.8 |
240.3 |
C15 |
C12 |
C13 |
H11 |
185.6 |
294.5 |
C15 |
C12 |
C13 |
H12 |
306.2 |
54.5 |
C7 |
C16 |
C15 |
C12 |
55.4 |
67.5 |
C12 |
C15 |
C16 |
C17 |
184.3 |
187.3 |
C16 |
C15 |
C12 |
H14 |
239.9 |
240.3 |
C16 |
C15 |
C12 |
H15 |
120.1 |
119.8 |
C12 |
C15 |
C16 |
H16 |
300.5 |
307.7 |
H14 |
C15 |
C12 |
H15 |
240.1 |
239.5 |
C11 |
C12 |
C13 |
C15 |
129.6 |
120.5 |
C11 |
C12 |
C13 |
H10 |
244.9 |
240.2 |
C13 |
C12 |
C15 |
C16 |
78.9 |
71.3 |
C15 |
C12 |
C13 |
H10 |
115.4 |
119.8 |
C13 |
C12 |
C15 |
H14 |
198.9 |
191.0 |
C13 |
C12 |
C15 |
H15 |
318.8 |
311.5 |
C12 |
C13 |
C14 |
O2 |
254.8 |
180.0 |
C14 |
C13 |
C12 |
H11 |
240.3 |
240.0 |
C14 |
C13 |
C12 |
H12 |
119.7 |
120.0 |
H11 |
C13 |
C12 |
H12 |
239.5 |
240.0 |
C7 |
C6 |
C5 |
H4 |
357.2 |
359.2 |
C7 |
C6 |
C3 |
H2 |
2.8 |
0.4 |
N1 |
C7 |
C16 |
H5 |
244.9 |
239.9 |
C12 |
C15 |
C16 |
C7 |
55.4 |
67.5 |
C15 |
C16 |
C7 |
C17 |
127.9 |
119.8 |
C7 |
C16 |
C15 |
H14 |
295.3 |
307.8 |
C7 |
C16 |
C15 |
H15 |
175.5 |
187.3 |
C15 |
C16 |
C7 |
H16 |
244.6 |
240.3 |
C7 |
C16 |
C17 |
C22 |
262.9 |
240.0 |
C17 |
C16 |
C7 |
H16 |
116.7 |
120.5 |
C6 |
C5 |
C4 |
H3 |
180.1 |
179.5 |
C5 |
C6 |
C3 |
H2 |
180.6 |
179.5 |
C6 |
C3 |
C2 |
H1 |
180.0 |
180.0 |
C4 |
C1 |
C2 |
H1 |
179.5 |
180.3 |
C16 |
C15 |
C12 |
H10 |
194.1 |
191.0 |
C12 |
C15 |
C16 |
H14 |
120.1 |
119.7 |
C12 |
C15 |
C16 |
H15 |
239.9 |
240.2 |
C7 |
C16 |
C15 |
C17 |
231.1 |
240.2 |
C15 |
C16 |
C7 |
H5 |
79.1 |
69.4 |
C7 |
C16 |
C15 |
H16 |
115.0 |
119.8 |
C15 |
C16 |
C17 |
C22 |
135.2 |
120.8 |
C17 |
C16 |
C15 |
H16 |
243.9 |
239.6 |
H14 |
C15 |
C16 |
H15 |
119.9 |
120.5 |
C14 |
C13 |
C12 |
C15 |
65.9 |
174.6 |
C14 |
C13 |
C12 |
H10 |
310.5 |
54.8 |
C12 |
C13 |
C14 |
H11 |
119.7 |
120.0 |
C12 |
C13 |
C14 |
H12 |
240.3 |
240.0 |
C13 |
C14 |
O2 |
H13 |
179.5 |
179.9 |
H11 |
C13 |
C14 |
H12 |
120.5 |
120.0 |
O3 |
C14 |
C13 |
H11 |
314.6 |
240.0 |
O3 |
C14 |
C13 |
H12 |
194.1 |
120.0 |
O3 |
C14 |
O2 |
H13 |
0.0 |
359.9 |
C1 |
C2 |
C3 |
H1 |
180.0 |
180.0 |
C7 |
C16 |
C17 |
C15 |
127.7 |
119.2 |
C17 |
C16 |
C7 |
H5 |
311.2 |
309.6 |
C7 |
C16 |
C17 |
H16 |
243.8 |
239.6 |
C17 |
C16 |
C15 |
H14 |
64.3 |
67.6 |
C17 |
C16 |
C15 |
H15 |
304.4 |
307.1 |
C15 |
C16 |
C17 |
H16 |
116.1 |
120.3 |
C18 |
C17 |
C16 |
C22 |
178.8 |
180.3 |
C16 |
C17 |
C22 |
C21 |
178.5 |
179.7 |
C16 |
C17 |
C22 |
H20 |
358.5 |
360.0 |
C3 |
C2 |
C1 |
H1 |
180.0 |
180.0 |
O2 |
C14 |
C13 |
H11 |
135.1 |
60.0 |
O2 |
C14 |
C13 |
H12 |
14.5 |
300.0 |
C16 |
C17 |
C18 |
C22 |
181.2 |
179.7 |
C18 |
C17 |
C16 |
H16 |
198.0 |
180.7 |
C18 |
C17 |
C22 |
C21 |
359.6 |
359.5 |
C18 |
C17 |
C22 |
H20 |
179.7 |
179.7 |
C19 |
C18 |
C17 |
C22 |
0.3 |
0.3 |
C18 |
C19 |
C20 |
C21 |
359.9 |
360.0 |
C20 |
C19 |
C18 |
H18 |
180.0 |
180.0 |
C18 |
C19 |
C20 |
H19 |
179.8 |
180.0 |
C22 |
C17 |
C16 |
H16 |
19.1 |
0.5 |
C20 |
C19 |
C18 |
H17 |
179.9 |
180.1 |
C18 |
C19 |
C20 |
H18 |
180.0 |
180.0 |
C19 |
C20 |
C21 |
CL2 |
179.5 |
180.0 |
C21 |
C20 |
C19 |
H19 |
180.0 |
180.0 |
C17 |
C22 |
C21 |
H20 |
180.0 |
180.2 |
C22 |
C21 |
C20 |
H19 |
180.1 |
179.8 |
C17 |
C22 |
C21 |
C20 |
0.1 |
0.5 |
C21 |
C20 |
C19 |
H18 |
179.8 |
180.0 |
C19 |
C20 |
C21 |
H19 |
180.0 |
180.0 |
C17 |
C22 |
C21 |
CL2 |
180.8 |
180.3 |
CL2 |
C21 |
C20 |
H19 |
359.5 |
0.0 |
H2 |
C3 |
C2 |
H1 |
360.0 |
360.0 |
H4 |
C5 |
C4 |
H3 |
0.1 |
0.2 |
N1 |
C7 |
H5 |
C16 |
123.3 |
121.0 |
H5 |
C7 |
C16 |
C15 |
79.1 |
69.4 |
H5 |
C7 |
C16 |
C17 |
311.2 |
309.6 |
H5 |
C7 |
C16 |
H16 |
194.5 |
189.1 |
O4 |
C9 |
H7 |
H8 |
120.0 |
240.0 |
H7 |
C9 |
O4 |
H9 |
300.0 |
60.0 |
H7 |
C9 |
C8 |
H6 |
192.5 |
65.0 |
O4 |
C9 |
H8 |
H7 |
240.0 |
119.9 |
H8 |
C9 |
O4 |
H9 |
60.0 |
300.0 |
H8 |
C9 |
C8 |
H6 |
72.5 |
185.0 |
H9 |
O4 |
C9 |
H7 |
300.0 |
60.0 |
H9 |
O4 |
C9 |
H8 |
60.0 |
300.0 |
C11 |
C12 |
H10 |
C15 |
236.3 |
239.5 |
C11 |
C12 |
H10 |
C13 |
118.4 |
119.7 |
C13 |
C12 |
H10 |
C15 |
117.9 |
119.7 |
H10 |
C12 |
C15 |
C16 |
194.1 |
191.0 |
H10 |
C12 |
C15 |
H14 |
314.1 |
310.7 |
H10 |
C12 |
C15 |
H15 |
74.0 |
71.2 |
H10 |
C12 |
C13 |
C14 |
310.5 |
54.8 |
H10 |
C12 |
C13 |
H11 |
70.2 |
174.8 |
H10 |
C12 |
C13 |
H12 |
190.8 |
294.8 |
H11 |
C13 |
C12 |
C15 |
185.6 |
294.5 |
C12 |
C13 |
H11 |
C14 |
241.6 |
240.0 |
H11 |
C13 |
C12 |
H10 |
70.2 |
174.8 |
C12 |
C13 |
H11 |
H12 |
120.8 |
120.0 |
H11 |
C13 |
C14 |
O2 |
135.1 |
60.0 |
C14 |
C13 |
H11 |
H12 |
239.2 |
240.0 |
H12 |
C13 |
C12 |
C15 |
306.2 |
54.5 |
C12 |
C13 |
H12 |
C14 |
118.4 |
120.0 |
H12 |
C13 |
C12 |
H10 |
190.8 |
294.8 |
C12 |
C13 |
H12 |
H11 |
239.2 |
240.0 |
H12 |
C13 |
C14 |
O2 |
14.5 |
300.0 |
C14 |
C13 |
H12 |
H11 |
120.8 |
120.0 |
C12 |
C15 |
H14 |
C16 |
239.7 |
241.1 |
H14 |
C15 |
C12 |
H10 |
314.1 |
310.7 |
C12 |
C15 |
H14 |
H15 |
119.9 |
120.5 |
H14 |
C15 |
C16 |
C17 |
64.3 |
67.6 |
C16 |
C15 |
H14 |
H15 |
240.1 |
239.5 |
H14 |
C15 |
C16 |
H16 |
180.4 |
188.0 |
C12 |
C15 |
H15 |
C16 |
120.3 |
119.0 |
H15 |
C15 |
C12 |
H10 |
74.0 |
71.2 |
C12 |
C15 |
H15 |
H14 |
240.1 |
239.5 |
H15 |
C15 |
C16 |
C17 |
304.4 |
307.1 |
C16 |
C15 |
H15 |
H14 |
119.9 |
120.5 |
H15 |
C15 |
C16 |
H16 |
60.5 |
67.5 |
C7 |
C16 |
H16 |
C15 |
241.2 |
240.8 |
C7 |
C16 |
H16 |
C17 |
121.6 |
120.4 |
H16 |
C16 |
C7 |
H5 |
194.5 |
189.1 |
C15 |
C16 |
H16 |
C17 |
240.3 |
239.7 |
H16 |
C16 |
C15 |
H14 |
180.4 |
188.0 |
H16 |
C16 |
C15 |
H15 |
60.5 |
67.5 |
H16 |
C16 |
C17 |
C22 |
19.1 |
0.5 |
H17 |
C18 |
C17 |
C22 |
180.3 |
180.2 |
H17 |
C18 |
C19 |
C20 |
179.9 |
180.1 |
H17 |
C18 |
C19 |
H18 |
360.0 |
0.1 |
C18 |
C19 |
H18 |
C20 |
180.0 |
180.0 |
H18 |
C19 |
C18 |
H17 |
360.0 |
0.1 |
H18 |
C19 |
C20 |
C21 |
179.8 |
180.0 |
H18 |
C19 |
C20 |
H19 |
359.8 |
360.0 |
C19 |
C20 |
H19 |
C21 |
180.0 |
180.0 |
H19 |
C20 |
C19 |
H18 |
359.8 |
360.0 |
H19 |
C20 |
C21 |
CL2 |
359.5 |
0.0 |
C17 |
C22 |
H20 |
C21 |
180.0 |
179.8 |
H21 |
C10 |
C8 |
H6 |
149.5 |
202.9 |
C23 |
C10 |
H21 |
H22 |
243.7 |
240.0 |
H21 |
C10 |
C23 |
H23 |
58.8 |
202.2 |
H21 |
C10 |
C23 |
H24 |
178.8 |
322.2 |
H21 |
C10 |
C23 |
H25 |
298.8 |
82.2 |
H22 |
C10 |
C8 |
H6 |
267.2 |
322.9 |
C23 |
C10 |
H22 |
H21 |
116.3 |
120.0 |
H22 |
C10 |
C23 |
H23 |
301.2 |
82.2 |
H22 |
C10 |
C23 |
H24 |
61.2 |
202.3 |
H22 |
C10 |
C23 |
H25 |
181.2 |
322.2 |
H23 |
C23 |
C10 |
H21 |
58.8 |
202.2 |
H23 |
C23 |
C10 |
H22 |
301.2 |
82.2 |
C10 |
C23 |
H23 |
H24 |
120.0 |
120.0 |
C10 |
C23 |
H23 |
H25 |
240.0 |
240.0 |
H24 |
C23 |
H23 |
H25 |
120.0 |
120.0 |
H24 |
C23 |
C10 |
H21 |
178.8 |
322.2 |
H24 |
C23 |
C10 |
H22 |
61.2 |
202.3 |
C10 |
C23 |
H24 |
H23 |
240.0 |
240.0 |
C10 |
C23 |
H24 |
H25 |
120.0 |
120.0 |
H23 |
C23 |
H24 |
H25 |
240.0 |
240.0 |
H25 |
C23 |
C10 |
H21 |
298.8 |
82.2 |
H25 |
C23 |
C10 |
H22 |
181.2 |
322.2 |
C10 |
C23 |
H25 |
H23 |
120.0 |
120.0 |
C10 |
C23 |
H25 |
H24 |
240.0 |
240.0 |
H23 |
C23 |
H25 |
H24 |
120.0 |
120.0 |