PDB Chemical Component 0Y2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 0Y2

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CBH CBI 1.414 1.388
CBH CBG 1.388 1.362
CBI CBJ 1.392 1.375
CBG CBC 1.366 1.411
CBJ CBD 1.395 1.398
CBC CBD 1.501 1.398
CBC CBB 1.421 1.453
CBD S1E 1.805 1.760
CBA CBB 1.558 1.507
CBA CAZ 1.532 1.529
CBB CBF 1.331 1.318
CB CA 1.508 1.531
CB CAS 1.548 1.530
S1E CBF 1.631 1.753
CA C 1.586 1.507
CA N 1.408 1.469
OXT C 1.250 1.208
CAZ NAR 1.507 1.469
CAS NAR 1.498 1.468
C O 1.267 1.342
NAR CAF 1.491 1.469
OAH CAB 1.377 1.429
CAF CAA 1.459 1.531
CAA CAB 1.490 1.545
CAA OAE 1.474 1.444
CAB CAC 1.467 1.545
OAE CAD 1.410 1.445
CAC OAI 1.347 1.429
CAC CAD 1.527 1.545
CAD N9 1.472 1.465
N9 C4 1.383 1.372
N9 C8 1.360 1.363
N3 C4 1.385 1.329
N3 C2 1.363 1.316
C4 C5 1.430 1.404
C2 N1 1.353 1.320
C8 N7 1.355 1.301
C5 N7 1.362 1.355
C5 C6 1.420 1.405
N1 C6 1.375 1.329
C6 N6 1.431 1.384
CBG H1 1.080 1.080
CBH H2 1.080 1.080
CBI H3 1.080 1.080
CBJ H4 1.080 1.080
CBF H5 1.080 1.081
CBA H6 1.100 1.091
CBA H7 1.100 1.090
CAZ H8 1.100 1.090
CAZ H9 1.100 1.090
CAS H11 1.100 1.090
CAS H12 1.100 1.090
CB H13 1.100 1.090
CB H14 1.100 1.090
CA H15 1.100 1.090
O H16 0.950 0.967
N H17 1.000 1.009
N H18 1.000 1.010
CAF H20 1.101 1.090
CAF H21 1.100 1.091
CAA H22 1.100 1.090
CAB H23 1.100 1.089
OAH H24 0.950 0.967
CAC H25 1.099 1.090
OAI H26 0.950 0.968
CAD H27 1.100 1.090
C8 H28 1.079 1.080
C2 H29 1.080 1.080
N6 H30 1.000 0.971
N6 H31 1.000 0.970

Bond Angles for 0Y2

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CBH CBI CBJ 120.6 120.2
CBI CBH H2 119.2 119.7
CBH CBI H3 119.7 119.9
CBH CBG H1 120.6 119.8
CBI CBJ CBD 120.3 120.2
CBJ CBI H3 119.7 119.9
CBI CBJ H4 119.8 119.9
CBG CBC CBD 121.3 118.8
CBG CBC CBB 128.2 129.4
CBC CBD CBJ 117.3 119.8
CBJ CBD S1E 138.1 130.6
CBD CBJ H4 119.9 119.9
CBD CBC CBB 110.5 111.8
CBC CBD S1E 104.5 109.7
CBC CBB CBF 116.1 114.9
CBD S1E CBF 95.2 92.2
CBA CAZ NAR 116.1 109.5
CAZ CBA H6 106.5 109.5
CAZ CBA H7 106.5 109.5
CBA CAZ H8 107.8 109.5
CBA CAZ H9 107.8 109.5
CBB CBF H5 123.1 124.3
CB CA C 112.7 109.5
CB CA N 112.2 109.5
CA CB H13 107.1 109.5
CA CB H14 107.1 109.4
CB CA H15 107.4 109.5
CB CAS H11 106.7 109.5
CB CAS H12 106.7 109.4
S1E CBF H5 123.1 124.2
C CA N 109.2 109.5
CA C O 121.8 120.0
C CA H15 106.5 109.5
N CA H15 108.7 109.4
CA N H17 109.5 111.0
CA N H18 109.5 111.0
OXT C O 118.3 120.0
CAZ NAR CAF 104.6 111.0
NAR CAZ H8 107.8 109.5
NAR CAZ H9 107.8 109.4
CAS NAR CAF 107.9 111.0
C O H16 109.5 117.0
NAR CAF CAA 119.5 109.5
NAR CAF H20 106.9 109.5
NAR CAF H21 106.9 109.5
OAH CAB CAC 108.5 110.5
OAH CAB H23 111.6 110.5
CAF CAA CAB 112.3 110.4
CAF CAA OAE 108.9 110.3
CAA CAF H20 106.9 109.5
CAA CAF H21 106.9 109.4
CAF CAA H22 109.7 110.3
OAE CAA CAB 107.0 104.8
CAA CAB CAC 106.5 104.0
CAB CAA H22 109.3 110.4
CAA CAB H23 109.9 110.5
CAA OAE CAD 106.6 105.3
OAE CAA H22 109.6 110.5
CAB CAC OAI 106.7 110.5
CAB CAC CAD 102.3 104.1
CAC CAB H23 110.2 110.5
CAB CAC H25 110.0 110.5
OAE CAD CAC 106.2 104.8
OAE CAD N9 110.6 110.4
OAE CAD H27 106.5 110.4
OAI CAC CAD 116.3 110.5
OAI CAC H25 111.8 110.5
CAC OAI H26 109.5 114.0
CAC CAD N9 121.7 110.4
CAD CAC H25 109.1 110.7
CAC CAD H27 105.2 110.4
CAD N9 C4 124.3 126.3
CAD N9 C8 128.4 126.3
N9 CAD H27 105.7 110.4
C8 N9 C4 107.3 107.4
N9 C4 C5 106.9 106.0
N9 C8 N7 110.5 110.0
N9 C8 H28 124.8 125.0
N3 C2 N1 122.7 122.5
N3 C2 H29 118.6 118.8
C4 C5 C6 118.1 118.2
C2 N1 C6 119.8 121.2
N1 C2 H29 118.7 118.7
N7 C8 H28 124.8 125.0
C5 C6 N1 120.2 118.5
C5 C6 N6 118.7 120.8
N1 C6 N6 121.1 120.8
C6 N6 H30 109.5 120.0
C6 N6 H31 109.5 120.0
H6 CBA H7 109.5 109.5
H8 CAZ H9 109.5 109.5
H11 CAS H12 109.5 109.5
H13 CB H14 109.4 109.5
H17 N H18 109.5 111.0
H20 CAF H21 109.5 109.5
H30 N6 H31 109.4 120.0

Torsion Angles for 0Y2

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CBI CBH CBG H1 180.5 180.0
CBH CBI CBJ CBD 359.8 360.0
CBJ CBI CBH H3 180.0 180.0
CBH CBI CBJ H4 179.8 180.0
CBH CBG CBC CBD 359.2 360.0
CBH CBG CBC CBB 179.3 180.3
CBJ CBI CBH H2 180.0 180.0
CBH CBI CBJ H3 180.0 180.0
CBC CBD CBJ CBI 359.9 0.0
CBI CBJ CBD S1E 180.3 179.7
CBD CBJ CBI H4 180.0 180.0
CBG CBC CBD CBJ 0.6 0.0
CBD CBC CBG CBB 179.9 179.6
CBG CBC CBD S1E 180.3 180.2
CBG CBC CBB CBF 179.8 179.7
CBD CBJ CBI H3 179.8 180.0
CBI CBJ CBD H4 180.0 180.0
CBJ CBD CBC CBB 180.5 179.7
CBC CBD CBJ S1E 179.6 180.3
CBJ CBD S1E CBF 179.4 180.3
CBI CBJ CBD CBC 359.9 0.0
CBG CBC CBD CBB 180.1 180.3
CBJ CBD CBC S1E 180.3 179.8
CBC CBD CBJ H4 179.9 180.0
CBD CBC CBB CBF 359.9 0.0
CBC CBD S1E CBF 359.7 0.0
CBG CBC CBB CBD 179.9 179.7
CBB CBC CBD CBJ 180.5 179.7
CBB CBC CBD S1E 0.3 360.0
CBC CBB CBF H5 179.9 180.1
CBC CBD S1E CBJ 180.4 179.7
S1E CBD CBJ H4 0.3 359.7
S1E CBD CBC CBB 0.3 360.0
CBD S1E CBF H5 180.2 179.9
CBA CBB CBF H5 359.6 0.1
CBA CAZ NAR CAF 233.9 190.0
NAR CAZ CBA H8 239.0 240.0
NAR CAZ CBA H9 120.9 120.0
H6 CBA CAZ H7 116.7 120.0
H8 CAZ CBA H9 241.9 240.0
S1E CBF CBB H5 180.0 179.9
CA CB CAS H11 248.5 63.5
CA CB CAS H12 5.5 303.5
C CA CB N 236.3 240.0
CB CA C O 60.2 279.4
C CA CB H15 117.0 120.1
N CA CB H15 240.7 240.1
CB CA N H17 180.0 176.0
CB CA N H18 300.0 300.0
H13 CB CA H14 242.7 120.0
CB CAS NAR CAF 214.1 72.2
H11 CAS CB H12 243.0 120.0
CBC CBB CBF S1E 359.9 360.0
CBB CBF S1E H5 180.0 180.1
CB CA C N 125.3 120.0
C CA CB H13 40.4 54.3
C CA CB H14 157.7 294.3
CB CA C H15 242.5 240.0
N CA C H15 117.2 120.0
C CA N H17 305.6 296.0
C CA N H18 65.6 60.0
OXT C CA O 179.4 179.9
CA C O H16 179.4 185.0
CB CA N C 234.4 240.0
N CA CB H13 164.1 174.3
N CA CB H14 281.4 54.3
CB CA N H15 118.6 119.9
N CA C O 294.9 159.4
C CA N H15 244.2 240.0
H17 N CA H18 240.0 236.0
OXT C CA N 114.3 339.3
CA C OXT O 180.6 180.1
OXT C CA H15 357.1 219.4
OXT C O H16 0.0 5.1
NAR CAZ CBA H6 8.6 60.0
NAR CAZ CBA H7 251.9 300.0
CBA CAZ NAR H8 121.0 120.0
CBA CAZ NAR H9 239.0 240.0
CAS NAR CAZ CAF 245.0 236.0
CAZ NAR CAF CAA 114.0 76.2
CAZ NAR CAF H20 235.4 196.2
CAZ NAR CAF H21 352.6 316.3
H8 CAZ NAR H9 118.1 120.0
CAZ NAR CAS CAF 112.8 124.0
CAS NAR CAZ H8 358.0 306.1
CAS NAR CAZ H9 239.9 186.1
CAS NAR CAF CAA 229.4 200.2
CAS NAR CAF H20 350.9 320.2
CAS NAR CAF H21 108.0 80.2
O C CA N 294.9 159.4
O C CA H15 177.7 39.5
CAF NAR CAZ H8 113.0 70.0
CAF NAR CAZ H9 354.9 310.0
NAR CAF CAA CAB 262.7 181.7
NAR CAF CAA OAE 144.5 66.4
CAA CAF NAR H20 238.6 240.0
CAA CAF NAR H21 121.4 119.9
NAR CAF CAA H22 24.5 304.0
H20 CAF NAR H21 242.9 240.0
CAA CAB OAH CAC 116.1 114.6
OAH CAB CAA H22 10.8 336.4
CAA CAB OAH H23 237.8 237.3
OAH CAB CAC OAI 329.8 0.0
OAH CAB CAC CAD 92.4 118.6
CAC CAB OAH H23 121.6 122.7
OAH CAB CAC H25 208.3 237.4
NAR CAF CAA H20 121.4 120.0
NAR CAF CAA H21 238.6 240.0
OAE CAA CAF CAB 241.7 244.6
CAF CAA CAB CAC 250.2 217.2
CAB CAA CAF H22 238.2 237.7
CAF CAA CAB H23 9.6 335.9
CAF CAA OAE CAD 134.1 159.4
OAE CAA CAF H22 119.9 122.3
H20 CAF CAA H21 117.1 120.0
OAH CAB CAA CAC 242.7 241.4
OAH CAB CAA H23 123.2 122.7
CAF CAA CAB OAE 240.6 241.2
CAB CAA CAF H20 141.3 61.7
CAB CAA CAF H21 24.2 301.7
CAF CAA CAB H22 122.0 122.2
CAB CAA OAE CAD 12.5 40.6
OAE CAA CAB H22 241.5 241.0
CAA CAB CAC OAI 211.5 241.4
CAA CAB CAC CAD 334.1 360.0
CAC CAB CAA H23 240.6 241.3
CAA CAB CAC H25 90.0 118.8
CAF CAA OAE CAB 121.6 118.8
OAE CAA CAF H20 23.0 306.3
OAE CAA CAF H21 265.9 186.4
CAF CAA OAE H22 240.0 237.8
OAE CAA CAB CAC 9.6 336.0
CAB CAA OAE H22 118.4 119.0
OAE CAA CAB H23 129.1 94.7
CAA OAE CAD CAC 331.0 319.4
CAA OAE CAD N9 197.1 200.7
CAA OAE CAD H27 82.7 78.3
OAH CAB CAC H23 237.5 237.3
CAC CAB CAA H22 128.2 95.0
CAA CAB CAC H23 119.2 118.7
OAE CAD CAC CAB 34.4 24.0
OAI CAC CAB CAD 237.4 241.4
OAI CAC CAB H25 121.5 122.6
CAB CAC OAI H26 180.0 298.5
CAB CAC CAD N9 162.0 142.8
CAD CAC CAB H25 244.1 241.2
CAB CAC CAD H27 281.8 265.2
CAD OAE CAA CAB 12.5 40.6
CAD OAE CAA H22 254.1 281.6
CAB CAC CAD OAE 34.4 24.0
OAI CAC CAD OAE 150.3 142.6
CAC CAD OAE N9 133.9 118.8
OAE CAD CAC H25 277.9 265.3
CAC CAD OAE H27 248.3 241.1
OAE CAD N9 C4 279.0 204.0
OAE CAD N9 C8 98.1 24.3
N9 CAD OAE H27 114.4 122.4
CAB CAC OAI CAD 113.4 114.6
OAI CAC CAB H23 92.2 122.7
CAB CAC OAI H25 239.7 237.4
OAE CAD CAC OAI 150.3 142.6
OAI CAC CAD N9 277.8 261.4
CAD CAC OAI H25 126.3 122.7
OAI CAC CAD H27 37.7 23.8
CAB CAC CAD OAI 244.2 241.4
CAD CAC CAB H23 214.9 241.3
CAB CAC CAD H25 116.5 118.8
OAE CAD CAC N9 232.5 241.2
OAE CAD CAC H27 112.6 118.8
OAI CAC CAD H25 232.4 237.4
CAD CAC OAI H26 66.6 183.9
CAC CAD N9 C4 153.5 88.7
CAC CAD N9 C8 332.5 269.0
N9 CAD CAC H27 240.1 237.6
OAE CAD N9 CAC 125.6 115.3
OAE CAD N9 H27 245.2 237.7
N9 CAD CAC H25 45.4 24.0
CAC CAD N9 H27 119.6 122.4
C8 N9 CAD C4 179.1 180.3
CAD N9 C4 C5 179.3 179.9
CAD N9 C8 N7 180.5 180.0
CAD N9 C8 H28 0.5 360.0
CAD N9 C4 C8 179.2 180.3
C4 N9 CAD H27 33.9 326.3
C4 N9 C8 N7 359.7 0.2
C4 N9 C8 H28 179.7 180.2
N9 C4 C5 C6 179.1 180.2
CAD N9 C8 C4 180.8 179.7
C8 N9 CAD H27 213.0 146.6
C8 N9 C4 C5 0.0 359.6
N7 C8 N9 H28 180.0 180.0
N3 C4 C5 C6 359.9 0.1
N3 C2 N1 C6 359.9 359.5
N1 C2 N3 H29 180.0 180.1
C4 C5 C6 N1 0.5 359.4
C4 C5 C6 N6 180.7 180.2
N3 C2 N1 H29 180.0 179.9
C5 C6 N1 C2 359.6 0.8
C2 N1 C6 N6 179.4 180.0
N7 C8 N9 C4 359.7 0.2
N9 C8 N7 H28 180.0 180.0
N9 C4 C5 N7 0.3 0.4
C5 N7 C8 H28 180.5 180.0
C2 N1 C6 C5 359.6 0.8
N1 C6 C5 N6 179.8 179.2
C5 C6 N6 H30 179.8 360.0
C5 C6 N6 H31 299.8 180.0
C6 N1 C2 H29 179.8 179.6
C5 C6 N1 N6 180.2 180.8
N1 C6 N6 H30 0.0 180.8
N1 C6 N6 H31 120.0 0.8
C5 C6 N6 N1 179.8 179.2
H30 N6 C6 H31 240.0 180.0
H1 CBG CBC CBD 179.2 180.0
H1 CBG CBC CBB 359.3 0.3
H2 CBH CBI CBJ 180.0 180.0
H2 CBH CBI H3 0.0 0.1
H2 CBH CBG H1 0.5 360.0
CBH CBI H3 CBJ 180.0 180.0
H3 CBI CBH H2 0.0 0.1
H3 CBI CBJ CBD 179.8 180.0
H3 CBI CBJ H4 359.8 360.0
CBI CBJ H4 CBD 180.0 180.0
H4 CBJ CBI H3 359.8 360.0
H4 CBJ CBD S1E 0.3 359.7
H6 CBA CAZ NAR 8.6 60.0
CAZ CBA H6 H7 245.3 239.9
H6 CBA CAZ H8 129.6 180.0
H6 CBA CAZ H9 247.7 300.0
H7 CBA CAZ NAR 251.9 300.0
CAZ CBA H7 H6 114.7 120.1
H7 CBA CAZ H8 12.9 60.0
H7 CBA CAZ H9 131.0 180.0
CBA CAZ H8 NAR 234.0 240.0
H8 CAZ CBA H6 129.6 180.0
H8 CAZ CBA H7 12.9 60.0
CBA CAZ H8 H9 117.0 120.1
H8 CAZ NAR CAF 113.0 70.0
NAR CAZ H8 H9 243.0 240.0
CBA CAZ H9 NAR 126.0 120.0
H9 CAZ CBA H6 247.7 300.0
H9 CAZ CBA H7 131.0 180.0
CBA CAZ H9 H8 243.0 240.0
H9 CAZ NAR CAF 354.9 310.0
NAR CAZ H9 H8 117.0 120.0
CB CAS H11 H12 115.1 240.0
H11 CAS NAR CAF 92.6 192.2
CB CAS H12 H11 244.9 120.0
H12 CAS NAR CAF 335.7 312.2
H13 CB CA C 40.4 54.3
H13 CB CA N 164.1 174.3
CA CB H13 H14 115.7 240.0
H13 CB CA H15 283.4 294.3
H13 CB CAS H11 127.1 183.5
H13 CB CAS H12 244.1 63.5
H14 CB CA C 157.7 294.3
H14 CB CA N 281.4 54.3
CA CB H14 H13 244.2 120.0
H14 CB CA H15 40.7 174.2
H14 CB CAS H11 9.8 303.5
H14 CB CAS H12 126.8 183.5
CB CA H15 C 120.9 120.1
CB CA H15 N 238.5 240.0
H15 CA CB H13 283.4 294.3
H15 CA CB H14 40.7 174.2
C CA H15 N 117.5 120.0
H15 CA C O 177.7 39.5
H15 CA N H17 61.4 56.1
H15 CA N H18 181.4 180.1
H17 N CA H15 61.4 56.1
CA N H17 H18 120.0 124.0
H18 N CA H15 181.4 180.1
CA N H18 H17 240.0 236.0
NAR CAF H20 CAA 230.9 240.0
NAR CAF H20 H21 115.4 120.0
H20 CAF CAA CAB 141.3 61.7
H20 CAF CAA OAE 23.0 306.3
CAA CAF H20 H21 244.6 240.1
H20 CAF CAA H22 263.1 184.0
NAR CAF H21 CAA 129.1 120.0
NAR CAF H21 H20 244.6 239.9
H21 CAF CAA CAB 24.2 301.7
H21 CAF CAA OAE 265.9 186.4
CAA CAF H21 H20 115.4 120.0
H21 CAF CAA H22 146.0 64.0
CAF CAA H22 CAB 236.4 237.7
CAF CAA H22 OAE 119.5 122.2
H22 CAA CAF H20 263.1 184.0
H22 CAA CAF H21 146.0 64.0
OAE CAA H22 CAB 116.9 115.5
H22 CAA CAB CAC 128.2 95.0
H22 CAA CAB H23 247.6 213.7
H22 CAA OAE CAD 254.1 281.6
OAH CAB H23 CAC 120.6 122.7
CAA CAB H23 CAC 242.8 245.3
H23 CAB CAA H22 247.6 213.7
H23 CAB CAC OAI 92.2 122.7
H23 CAB CAC CAD 214.9 241.3
H23 CAB CAC H25 330.8 0.1
H24 OAH CAB CAC 63.9 65.4
H24 OAH CAB H23 302.2 302.6
CAB CAC H25 OAI 118.3 122.6
CAB CAC H25 CAD 248.5 245.2
H25 CAC CAB H23 330.8 0.1
OAI CAC H25 CAD 130.1 122.6
H25 CAC OAI H26 300.3 61.2
H25 CAC CAD N9 45.4 24.0
H25 CAC CAD H27 165.3 146.4
H26 OAI CAC CAD 66.6 183.9
H26 OAI CAC H25 300.3 61.2
OAE CAD H27 CAC 247.6 244.6
OAE CAD H27 N9 117.6 122.3
CAC CAD H27 N9 230.0 237.7
H27 CAD CAC H25 165.3 146.4
H27 CAD N9 C4 33.9 326.3
H27 CAD N9 C8 213.0 146.6
H28 C8 N9 C4 179.7 180.2
N9 C8 H28 N7 180.0 180.0
N3 C2 H29 N1 180.0 180.1
H29 C2 N1 C6 179.8 179.6
C6 N6 H30 H31 120.0 180.0
C6 N6 H31 H30 240.0 180.0