PDB Chemical Component 0XU
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0XU
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O |
C |
1.369 |
1.208 |
| NE |
CD |
1.483 |
1.470 |
| CG |
CD |
1.539 |
1.530 |
| CG |
CB |
1.530 |
1.530 |
| C |
OXT |
1.230 |
1.343 |
| C |
CA |
1.517 |
1.506 |
| N |
CA |
1.468 |
1.469 |
| CD |
C5' |
1.500 |
1.507 |
| CA |
CB |
1.537 |
1.530 |
| C5' |
C4' |
1.333 |
1.318 |
| C4' |
O4' |
1.375 |
1.362 |
| C4' |
C3' |
1.496 |
1.516 |
| O4' |
C1' |
1.427 |
1.443 |
| C8 |
N7 |
1.337 |
1.301 |
| C8 |
N9 |
1.373 |
1.363 |
| N7 |
C5 |
1.393 |
1.355 |
| N9 |
C1' |
1.453 |
1.465 |
| N9 |
C4 |
1.363 |
1.371 |
| C3' |
C2' |
1.523 |
1.550 |
| C3' |
O3' |
1.418 |
1.429 |
| C5 |
C6 |
1.391 |
1.406 |
| C5 |
C4 |
1.400 |
1.405 |
| N6 |
C6 |
1.428 |
1.384 |
| C1' |
C2' |
1.521 |
1.554 |
| C6 |
N1 |
1.352 |
1.329 |
| C4 |
N3 |
1.351 |
1.329 |
| C2' |
O2' |
1.420 |
1.429 |
| N1 |
C2 |
1.357 |
1.320 |
| N3 |
C2 |
1.349 |
1.317 |
| N |
H1 |
1.000 |
1.008 |
| N |
H2 |
1.000 |
1.009 |
| CA |
H4 |
1.100 |
1.090 |
| OXT |
H5 |
0.950 |
0.968 |
| CB |
H6 |
1.100 |
1.090 |
| CB |
H7 |
1.100 |
1.090 |
| CG |
H8 |
1.100 |
1.090 |
| CG |
H9 |
1.100 |
1.089 |
| CD |
H10 |
1.100 |
1.090 |
| NE |
H11 |
1.000 |
1.009 |
| NE |
H12 |
1.000 |
1.009 |
| C5' |
H14 |
1.080 |
1.080 |
| C3' |
H15 |
1.100 |
1.091 |
| O3' |
H16 |
0.951 |
0.967 |
| C2' |
H17 |
1.100 |
1.091 |
| O2' |
H18 |
0.950 |
0.966 |
| C1' |
H19 |
1.100 |
1.090 |
| C8 |
H20 |
1.080 |
1.080 |
| N6 |
H21 |
1.000 |
0.969 |
| N6 |
H22 |
1.000 |
0.970 |
| C2 |
H23 |
1.080 |
1.080 |
Bond Angles for 0XU
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
123.7 |
120.0 |
| NE |
CD |
C5' |
109.6 |
109.5 |
| NE |
CD |
H10 |
108.1 |
109.4 |
| CG |
CD |
C5' |
108.4 |
109.5 |
| CD |
CG |
H8 |
109.4 |
109.4 |
| CD |
CG |
H9 |
109.3 |
109.5 |
| CG |
CD |
H10 |
107.4 |
109.5 |
| CG |
CB |
H6 |
107.4 |
109.5 |
| CG |
CB |
H7 |
107.4 |
109.5 |
| C |
OXT |
H5 |
109.5 |
117.0 |
| C |
CA |
CB |
113.7 |
109.5 |
| C |
CA |
H4 |
105.4 |
109.5 |
| N |
CA |
CB |
115.4 |
109.4 |
| CA |
N |
H1 |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
H4 |
105.8 |
109.4 |
| CD |
C5' |
C4' |
130.1 |
120.0 |
| C5' |
CD |
H10 |
107.9 |
109.5 |
| CD |
C5' |
H14 |
114.9 |
120.0 |
| CB |
CA |
H4 |
105.1 |
109.5 |
| CA |
CB |
H6 |
107.5 |
109.5 |
| CA |
CB |
H7 |
107.4 |
109.4 |
| C5' |
C4' |
O4' |
118.1 |
125.6 |
| C5' |
C4' |
C3' |
129.4 |
125.6 |
| C4' |
C5' |
H14 |
114.9 |
120.0 |
| O4' |
C4' |
C3' |
112.5 |
108.8 |
| C4' |
O4' |
C1' |
105.4 |
108.0 |
| C4' |
C3' |
C2' |
99.7 |
104.1 |
| C4' |
C3' |
O3' |
107.6 |
110.6 |
| C4' |
C3' |
H15 |
112.8 |
110.5 |
| O4' |
C1' |
C2' |
109.7 |
102.7 |
| O4' |
C1' |
H19 |
107.8 |
110.7 |
| C8 |
N7 |
C5 |
104.7 |
109.5 |
| N7 |
C8 |
H20 |
124.0 |
125.0 |
| C8 |
N9 |
C4 |
107.7 |
107.4 |
| N7 |
C5 |
C6 |
134.2 |
134.7 |
| N7 |
C5 |
C4 |
109.9 |
107.1 |
| N9 |
C1' |
H19 |
107.5 |
110.8 |
| N9 |
C4 |
C5 |
105.8 |
106.0 |
| N9 |
C4 |
N3 |
125.7 |
134.9 |
| O3' |
C3' |
C2' |
109.3 |
110.5 |
| C3' |
C2' |
O2' |
114.6 |
111.1 |
| C2' |
C3' |
H15 |
112.4 |
110.5 |
| C3' |
C2' |
H17 |
110.1 |
111.1 |
| O3' |
C3' |
H15 |
114.1 |
110.6 |
| C3' |
O3' |
H16 |
109.5 |
114.0 |
| C6 |
C5 |
C4 |
115.8 |
118.2 |
| C5 |
C6 |
N1 |
118.0 |
118.4 |
| C5 |
C4 |
N3 |
128.5 |
119.1 |
| N6 |
C6 |
N1 |
118.9 |
120.8 |
| C1' |
C2' |
H17 |
110.1 |
111.0 |
| C6 |
N1 |
C2 |
120.2 |
121.2 |
| O2' |
C2' |
H17 |
111.6 |
111.0 |
| C2' |
O2' |
H18 |
109.5 |
114.0 |
| N1 |
C2 |
H23 |
116.4 |
118.7 |
| N3 |
C2 |
H23 |
116.4 |
118.8 |
| H1 |
N |
H2 |
109.4 |
111.0 |
| H6 |
CB |
H7 |
109.5 |
109.4 |
| H8 |
CG |
H9 |
109.4 |
109.5 |
| H11 |
NE |
H12 |
109.5 |
111.0 |
| H21 |
N6 |
H22 |
109.5 |
120.0 |
Torsion Angles for 0XU
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
H5 |
0.0 |
360.0 |
| O |
C |
CA |
CB |
91.6 |
100.0 |
| O |
C |
CA |
H4 |
206.2 |
220.0 |
| CG |
CD |
NE |
C5' |
237.4 |
240.0 |
| NE |
CD |
CG |
H8 |
313.6 |
175.1 |
| NE |
CD |
CG |
H9 |
73.4 |
55.0 |
| CG |
CD |
NE |
H10 |
120.1 |
120.0 |
| NE |
CD |
C5' |
C4' |
107.1 |
122.6 |
| C5' |
CD |
NE |
H10 |
242.7 |
240.0 |
| NE |
CD |
C5' |
H14 |
287.0 |
302.7 |
| NE |
CD |
CG |
C5' |
123.3 |
120.0 |
| NE |
CD |
CG |
H10 |
239.6 |
240.0 |
| CD |
CG |
CB |
H6 |
322.5 |
60.0 |
| CD |
CG |
CB |
H7 |
80.2 |
300.1 |
| CG |
CD |
C5' |
C4' |
233.6 |
242.6 |
| C5' |
CD |
CG |
H10 |
116.3 |
120.1 |
| CG |
CD |
C5' |
H14 |
53.6 |
62.6 |
| H8 |
CG |
CD |
H9 |
240.2 |
120.0 |
| CG |
CB |
CA |
H4 |
172.2 |
55.0 |
| CA |
CB |
CG |
H6 |
238.8 |
120.0 |
| CA |
CB |
CG |
H7 |
121.1 |
240.0 |
| H6 |
CB |
CG |
H7 |
242.3 |
120.0 |
| OXT |
C |
CA |
CB |
271.9 |
280.0 |
| OXT |
C |
CA |
H4 |
26.5 |
40.1 |
| N |
CA |
C |
CB |
228.5 |
240.1 |
| C |
CA |
N |
H1 |
180.0 |
59.9 |
| C |
CA |
N |
H2 |
300.0 |
183.9 |
| N |
CA |
C |
H4 |
113.9 |
120.0 |
| CB |
CA |
C |
H4 |
245.4 |
239.9 |
| C |
CA |
CB |
H6 |
165.8 |
295.1 |
| C |
CA |
CB |
H7 |
48.1 |
55.0 |
| C |
CA |
N |
CB |
130.6 |
120.0 |
| C |
CA |
N |
H4 |
246.4 |
240.0 |
| CB |
CA |
N |
H4 |
115.8 |
120.0 |
| N |
CA |
CB |
H6 |
294.9 |
55.0 |
| N |
CA |
CB |
H7 |
177.2 |
175.0 |
| H1 |
N |
CA |
H2 |
240.0 |
236.0 |
| NE |
CD |
C5' |
H10 |
117.5 |
120.0 |
| C5' |
CD |
CG |
H8 |
190.4 |
55.1 |
| C5' |
CD |
CG |
H9 |
310.2 |
295.0 |
| CG |
CD |
C5' |
H10 |
244.0 |
239.9 |
| CD |
C5' |
C4' |
O4' |
185.5 |
186.0 |
| CD |
C5' |
C4' |
C3' |
6.5 |
5.8 |
| C4' |
C5' |
CD |
H14 |
180.0 |
180.0 |
| CG |
CB |
CA |
H6 |
121.2 |
240.0 |
| CG |
CB |
CA |
H7 |
238.8 |
120.1 |
| C |
CA |
CB |
H4 |
114.7 |
120.1 |
| CB |
CA |
N |
H1 |
49.4 |
300.0 |
| CB |
CA |
N |
H2 |
169.4 |
63.9 |
| N |
CA |
CB |
H4 |
243.8 |
240.1 |
| H6 |
CB |
CA |
H7 |
117.7 |
240.1 |
| C4' |
C5' |
CD |
H10 |
349.6 |
2.7 |
| CD |
C5' |
C4' |
H14 |
180.0 |
180.0 |
| O4' |
C4' |
C5' |
C3' |
179.0 |
180.2 |
| C5' |
C4' |
O4' |
C1' |
161.2 |
207.5 |
| C5' |
C4' |
C3' |
C2' |
210.6 |
176.7 |
| C5' |
C4' |
C3' |
O3' |
96.6 |
58.0 |
| C5' |
C4' |
C3' |
H15 |
330.0 |
295.3 |
| C5' |
C4' |
O4' |
C3' |
180.8 |
179.8 |
| O4' |
C4' |
C5' |
H14 |
5.5 |
5.9 |
| O4' |
C4' |
C3' |
C2' |
31.5 |
356.5 |
| O4' |
C4' |
C3' |
O3' |
277.6 |
237.8 |
| O4' |
C4' |
C3' |
H15 |
150.9 |
115.1 |
| C4' |
O4' |
C1' |
C2' |
358.8 |
320.0 |
| C4' |
O4' |
C1' |
H19 |
114.6 |
78.3 |
| C5' |
C4' |
C3' |
O4' |
179.1 |
180.2 |
| C3' |
C4' |
C5' |
H14 |
186.5 |
185.7 |
| C3' |
C4' |
O4' |
C1' |
340.4 |
27.7 |
| O3' |
C3' |
C4' |
C2' |
246.0 |
241.3 |
| C4' |
C3' |
C2' |
O2' |
215.1 |
222.5 |
| C2' |
C3' |
C4' |
H15 |
240.7 |
241.4 |
| C4' |
C3' |
C2' |
H17 |
88.4 |
98.3 |
| O3' |
C3' |
C4' |
H15 |
126.7 |
122.7 |
| C4' |
C3' |
O3' |
H16 |
180.0 |
294.3 |
| C1' |
O4' |
C4' |
C3' |
340.4 |
27.7 |
| N9 |
C1' |
O4' |
H19 |
117.2 |
123.4 |
| O4' |
C1' |
C2' |
H17 |
263.0 |
277.2 |
| N7 |
C8 |
N9 |
C4 |
0.6 |
0.2 |
| C8 |
N7 |
C5 |
C6 |
176.4 |
180.1 |
| C8 |
N7 |
C5 |
C4 |
0.1 |
359.7 |
| C8 |
N9 |
C1' |
H19 |
203.0 |
147.2 |
| C8 |
N9 |
C4 |
C5 |
359.5 |
359.6 |
| C8 |
N9 |
C4 |
N3 |
179.6 |
180.5 |
| C5 |
N7 |
C8 |
H20 |
179.5 |
180.0 |
| N9 |
C4 |
C5 |
N7 |
0.3 |
0.4 |
| C6 |
C5 |
N7 |
C4 |
176.3 |
180.3 |
| N7 |
C5 |
C6 |
N1 |
180.4 |
179.9 |
| N7 |
C5 |
C4 |
N3 |
180.2 |
179.7 |
| O4' |
C1' |
N9 |
H19 |
242.6 |
236.6 |
| N9 |
C1' |
C2' |
H17 |
27.8 |
35.5 |
| N7 |
C5 |
C4 |
N9 |
0.3 |
0.4 |
| C4 |
N9 |
C1' |
H19 |
15.3 |
326.9 |
| C6 |
C5 |
C4 |
N9 |
183.2 |
180.1 |
| C5 |
C4 |
N9 |
N3 |
179.9 |
179.1 |
| C4' |
C3' |
C2' |
O3' |
247.4 |
241.3 |
| C4' |
C3' |
C2' |
H15 |
119.7 |
118.6 |
| O4' |
C1' |
C2' |
C3' |
20.2 |
35.1 |
| O3' |
C3' |
C2' |
H15 |
232.3 |
237.3 |
| C2' |
C3' |
O3' |
H16 |
72.7 |
179.6 |
| C1' |
C2' |
C3' |
H17 |
242.8 |
242.3 |
| O2' |
C2' |
C3' |
H17 |
126.6 |
124.1 |
| C3' |
C2' |
O2' |
H18 |
180.0 |
298.5 |
| C4' |
C3' |
O3' |
C2' |
107.3 |
114.7 |
| C4' |
C3' |
O3' |
H15 |
234.1 |
237.3 |
| O3' |
C3' |
C2' |
O2' |
327.7 |
341.1 |
| C2' |
C3' |
O3' |
H15 |
126.8 |
122.7 |
| O3' |
C3' |
C2' |
H17 |
201.0 |
217.0 |
| N7 |
C5 |
C6 |
C4 |
183.9 |
179.6 |
| N9 |
C4 |
C5 |
C6 |
183.2 |
180.1 |
| C6 |
C5 |
C4 |
N3 |
3.1 |
359.4 |
| N6 |
C6 |
C5 |
N1 |
182.2 |
180.0 |
| C5 |
C6 |
N1 |
C2 |
3.2 |
360.0 |
| N7 |
C5 |
C4 |
C6 |
177.0 |
180.3 |
| N9 |
C4 |
C5 |
N3 |
180.1 |
180.7 |
| C4 |
C5 |
C6 |
N1 |
356.5 |
0.3 |
| N6 |
C6 |
C5 |
C4 |
178.7 |
180.3 |
| C5 |
C6 |
N6 |
N1 |
177.8 |
180.0 |
| N6 |
C6 |
N1 |
C2 |
181.1 |
180.0 |
| O4' |
C1' |
C2' |
H19 |
116.5 |
118.3 |
| C1' |
C2' |
C3' |
H15 |
211.6 |
222.0 |
| C3' |
C2' |
C1' |
H17 |
117.1 |
117.9 |
| O2' |
C2' |
C1' |
H17 |
238.2 |
235.8 |
| C1' |
C2' |
O2' |
H18 |
66.7 |
186.9 |
| N1 |
C6 |
C5 |
C4 |
356.5 |
0.3 |
| C6 |
N1 |
C2 |
H23 |
177.8 |
180.0 |
| N9 |
C4 |
N3 |
C5 |
179.9 |
179.0 |
| C4 |
N3 |
C2 |
H23 |
181.4 |
179.7 |
| O4' |
C1' |
C2' |
O2' |
141.3 |
153.1 |
| O2' |
C2' |
C3' |
H15 |
95.4 |
103.9 |
| C3' |
C2' |
O2' |
H17 |
234.1 |
235.8 |
| C1' |
C2' |
O2' |
H17 |
120.8 |
124.2 |
| N3 |
C2 |
N1 |
H23 |
180.0 |
180.0 |
| N9 |
C4 |
N3 |
C2 |
177.9 |
179.6 |
| C5 |
C4 |
N3 |
C2 |
358.0 |
0.6 |
| N1 |
C2 |
N3 |
H23 |
180.0 |
180.0 |
| H1 |
N |
CA |
CB |
49.4 |
300.0 |
| CA |
N |
H1 |
H2 |
120.0 |
124.0 |
| H1 |
N |
CA |
H4 |
293.6 |
180.0 |
| H2 |
N |
CA |
CB |
169.4 |
63.9 |
| CA |
N |
H2 |
H1 |
240.0 |
236.0 |
| H2 |
N |
CA |
H4 |
53.6 |
304.0 |
| C |
CA |
H4 |
CB |
239.6 |
239.9 |
| N |
CA |
H4 |
CB |
122.5 |
119.9 |
| H4 |
CA |
N |
H1 |
293.6 |
180.0 |
| H4 |
CA |
N |
H2 |
53.6 |
304.0 |
| H4 |
CA |
CB |
H6 |
51.0 |
175.0 |
| H4 |
CA |
CB |
H7 |
293.3 |
294.9 |
| CG |
CB |
H6 |
H7 |
116.4 |
240.0 |
| H6 |
CB |
CA |
H4 |
51.0 |
175.0 |
| CA |
CB |
H6 |
H7 |
243.6 |
119.9 |
| CG |
CB |
H7 |
H6 |
243.6 |
120.0 |
| H7 |
CB |
CA |
H4 |
293.3 |
294.9 |
| CA |
CB |
H7 |
H6 |
116.4 |
240.0 |
| H8 |
CG |
CD |
C5' |
190.4 |
55.1 |
| CD |
CG |
H8 |
H9 |
119.8 |
240.0 |
| H8 |
CG |
CD |
H10 |
74.1 |
295.0 |
| H8 |
CG |
CB |
H6 |
202.4 |
179.9 |
| H8 |
CG |
CB |
H7 |
320.1 |
60.0 |
| H9 |
CG |
CD |
C5' |
310.2 |
295.0 |
| CD |
CG |
H9 |
H8 |
240.2 |
120.0 |
| H9 |
CG |
CD |
H10 |
193.9 |
175.0 |
| H9 |
CG |
CB |
H6 |
82.6 |
300.0 |
| H9 |
CG |
CB |
H7 |
200.3 |
180.0 |
| NE |
CD |
H10 |
C5' |
241.5 |
240.0 |
| CG |
CD |
H10 |
C5' |
116.7 |
120.0 |
| H10 |
CD |
CG |
H8 |
74.1 |
295.0 |
| H10 |
CD |
CG |
H9 |
193.9 |
175.0 |
| H10 |
CD |
C5' |
C4' |
349.6 |
2.7 |
| H10 |
CD |
C5' |
H14 |
169.6 |
182.7 |
| H11 |
NE |
CD |
C5' |
302.6 |
65.6 |
| H11 |
NE |
CD |
H10 |
59.9 |
185.6 |
| H12 |
NE |
CD |
C5' |
62.6 |
189.6 |
| H12 |
NE |
CD |
H10 |
179.9 |
309.6 |
| CD |
C5' |
H14 |
C4' |
180.0 |
180.0 |
| H14 |
C5' |
CD |
H10 |
169.6 |
182.7 |
| H14 |
C5' |
C4' |
O4' |
5.5 |
5.9 |
| H14 |
C5' |
C4' |
C3' |
186.5 |
185.7 |
| C4' |
C3' |
H15 |
C2' |
248.3 |
245.4 |
| C4' |
C3' |
H15 |
O3' |
123.1 |
122.7 |
| O3' |
C3' |
H15 |
C2' |
125.2 |
122.7 |
| H15 |
C3' |
C2' |
O2' |
95.4 |
103.9 |
| H15 |
C3' |
C2' |
H17 |
328.8 |
339.7 |
| H15 |
C3' |
O3' |
H16 |
305.9 |
56.9 |
| H16 |
O3' |
C3' |
C2' |
72.7 |
179.6 |
| H16 |
O3' |
C3' |
H15 |
305.9 |
56.9 |
| C3' |
C2' |
H17 |
O2' |
128.3 |
124.2 |
| H17 |
C2' |
C3' |
H15 |
328.8 |
339.7 |
| H17 |
C2' |
O2' |
H18 |
305.9 |
62.7 |
| H18 |
O2' |
C2' |
H17 |
305.9 |
62.7 |
| O4' |
C1' |
H19 |
C2' |
242.2 |
246.7 |
| H19 |
C1' |
C2' |
H17 |
146.5 |
158.9 |
| H20 |
C8 |
N7 |
C5 |
179.5 |
180.0 |
| H20 |
C8 |
N9 |
C4 |
180.7 |
180.2 |
| H21 |
N6 |
C6 |
N1 |
360.0 |
180.0 |
| H22 |
N6 |
C6 |
N1 |
120.0 |
0.0 |