Atom Nomenclature for 0XS

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0XS

Atom Name (V3) Atom Name (V2)
C4 C4
C6 C6
C7 C7
C8 C8
C12 C12
C14 C14
C15 C15
O18 O18
C16 C16
N19 N19
C2 C2
BR1 BR1
N17 N17
N13 N13
N5 N5
C3 C3
F9 F9
F10 F10
F11 F11
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6