Atom Nomenclature for 0WM

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0WM

Atom Name (V3) Atom Name (V2)
C1 C1
N2 N2
N3 N3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
N11 N11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
F18 F18
CL1 CL1
O20 O20
C21 C21
C22 C22
O23 O23
C24 C24
C25 C25
N26 N26
C27 C27
C28 C28
O29 O29
C30 C30
C31 C31
N32 N32
C33 C33
C34 C34
H1 H1
H8 H8
H10 H10
HN11 HN11
H14 H14
H15 H15
H17 H17
H21 H21
H22 H22
H22A H22A
H24 H24
H24A H24A
H25 H25
H25A H25A
HN26 HN26
H28 H28
H30 H30
H31 H31
H31A H31A
H33 H33
H33A H33A
H33B H33B
H34 H34
H34A H34A
H34B H34B