PDB Chemical Component 0VY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0VY
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C6 |
C7 |
1.494 |
1.552 |
C6 |
C5 |
1.510 |
1.549 |
C7 |
C8 |
1.477 |
1.543 |
C5 |
N1 |
1.475 |
1.474 |
C8 |
N1 |
1.448 |
1.470 |
N1 |
C2 |
1.366 |
1.375 |
C2 |
N4 |
1.372 |
1.375 |
C2 |
N3 |
1.306 |
1.304 |
N3 |
S9 |
1.634 |
1.656 |
N10 |
S9 |
1.599 |
1.656 |
S9 |
O11 |
1.464 |
1.420 |
S9 |
O12 |
1.439 |
1.420 |
C7 |
H1 |
1.101 |
1.090 |
C8 |
H2 |
1.100 |
1.090 |
N4 |
H4 |
1.000 |
0.970 |
C5 |
H5 |
1.100 |
1.090 |
C6 |
H6 |
1.100 |
1.090 |
N10 |
H7 |
1.000 |
0.970 |
N10 |
H8 |
1.000 |
0.970 |
C7 |
H9 |
1.100 |
1.089 |
C8 |
H10 |
1.100 |
1.090 |
N4 |
H3 |
1.000 |
0.970 |
C5 |
H11 |
1.100 |
1.090 |
C6 |
H12 |
1.100 |
1.091 |
Bond Angles for 0VY
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C7 |
H1 |
109.7 |
110.7 |
C6 |
C7 |
H9 |
109.7 |
110.9 |
C6 |
C5 |
H5 |
111.2 |
110.4 |
C6 |
C5 |
H11 |
111.2 |
110.4 |
C7 |
C8 |
N1 |
104.9 |
107.3 |
C8 |
C7 |
H1 |
109.7 |
110.7 |
C7 |
C8 |
H2 |
110.6 |
109.9 |
C8 |
C7 |
H9 |
109.6 |
110.7 |
C7 |
C8 |
H10 |
110.6 |
109.9 |
N1 |
C8 |
H2 |
110.6 |
109.8 |
N1 |
C8 |
H10 |
110.6 |
109.9 |
N1 |
C2 |
N4 |
117.3 |
120.0 |
N1 |
C2 |
N3 |
116.8 |
120.0 |
N3 |
C2 |
N4 |
125.9 |
120.0 |
C2 |
N4 |
H4 |
120.0 |
120.0 |
C2 |
N4 |
H3 |
120.0 |
119.9 |
C2 |
N3 |
S9 |
119.9 |
120.0 |
N3 |
S9 |
O11 |
103.4 |
106.4 |
N3 |
S9 |
O12 |
108.9 |
106.4 |
N10 |
S9 |
O11 |
110.8 |
106.4 |
N10 |
S9 |
O12 |
109.4 |
106.4 |
O11 |
S9 |
O12 |
114.8 |
123.2 |
H1 |
C7 |
H9 |
109.5 |
110.6 |
H2 |
C8 |
H10 |
109.5 |
110.0 |
H4 |
N4 |
H3 |
120.0 |
120.0 |
H5 |
C5 |
H11 |
109.5 |
110.3 |
H6 |
C6 |
H12 |
109.5 |
110.9 |
H7 |
N10 |
H8 |
109.5 |
120.0 |
Torsion Angles for 0VY
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C8 |
C7 |
C6 |
H1 |
240.1 |
118.3 |
C6 |
C7 |
C8 |
H2 |
118.3 |
97.2 |
C8 |
C7 |
C6 |
H9 |
119.9 |
241.5 |
C6 |
C7 |
C8 |
H10 |
239.8 |
218.4 |
H1 |
C7 |
C6 |
H9 |
239.7 |
123.2 |
C5 |
C6 |
C7 |
H1 |
121.8 |
277.1 |
C5 |
C6 |
C7 |
H9 |
242.0 |
153.9 |
H5 |
C5 |
C6 |
H11 |
237.7 |
122.2 |
C6 |
C7 |
C8 |
H1 |
119.9 |
241.6 |
C6 |
C7 |
C8 |
H9 |
240.1 |
118.5 |
N1 |
C8 |
C7 |
H2 |
240.7 |
240.7 |
N1 |
C8 |
C7 |
H10 |
119.2 |
119.4 |
H1 |
C7 |
C8 |
H9 |
120.2 |
236.9 |
H2 |
C8 |
C7 |
H10 |
238.5 |
238.8 |
C5 |
N1 |
C8 |
H2 |
240.4 |
239.5 |
C5 |
N1 |
C8 |
H10 |
118.9 |
118.4 |
N1 |
C8 |
C7 |
H1 |
239.2 |
96.2 |
C7 |
C8 |
N1 |
H2 |
119.2 |
119.4 |
N1 |
C8 |
C7 |
H9 |
118.9 |
219.3 |
C7 |
C8 |
N1 |
H10 |
240.7 |
240.5 |
C8 |
N1 |
C2 |
N4 |
183.2 |
360.0 |
C8 |
N1 |
C2 |
N3 |
3.0 |
180.2 |
H2 |
C8 |
N1 |
H10 |
121.5 |
121.2 |
N3 |
C2 |
N1 |
N4 |
179.8 |
180.3 |
N1 |
C2 |
N4 |
H4 |
179.7 |
180.3 |
N1 |
C2 |
N4 |
H3 |
359.7 |
0.2 |
N1 |
C2 |
N3 |
S9 |
186.9 |
179.7 |
N1 |
C2 |
N4 |
N3 |
179.7 |
180.3 |
N4 |
C2 |
N3 |
S9 |
6.7 |
360.0 |
H4 |
N4 |
C2 |
H3 |
180.0 |
180.1 |
N1 |
C2 |
N3 |
N4 |
180.3 |
179.7 |
N3 |
C2 |
N4 |
H4 |
0.0 |
0.0 |
N3 |
C2 |
N4 |
H3 |
180.0 |
179.9 |
C2 |
N3 |
S9 |
O11 |
188.8 |
293.5 |
C2 |
N3 |
S9 |
O12 |
66.3 |
66.5 |
S9 |
N3 |
C2 |
N4 |
6.7 |
360.0 |
N10 |
S9 |
N3 |
O11 |
118.0 |
246.5 |
N10 |
S9 |
N3 |
O12 |
240.6 |
113.5 |
O11 |
S9 |
N3 |
O12 |
122.5 |
227.0 |
N3 |
S9 |
N10 |
O11 |
246.7 |
113.5 |
N3 |
S9 |
N10 |
O12 |
119.1 |
246.4 |
O11 |
S9 |
N10 |
O12 |
232.4 |
132.9 |
N3 |
S9 |
O11 |
O12 |
241.5 |
123.0 |
N10 |
S9 |
O11 |
O12 |
124.6 |
237.1 |
N3 |
S9 |
O12 |
O11 |
115.4 |
237.0 |
N10 |
S9 |
O12 |
O11 |
234.6 |
122.9 |
C6 |
C7 |
H1 |
H9 |
120.4 |
236.7 |
H1 |
C7 |
C8 |
N1 |
239.2 |
96.2 |
H1 |
C7 |
C8 |
H2 |
358.4 |
215.5 |
C8 |
C7 |
H1 |
H9 |
239.7 |
123.1 |
H1 |
C7 |
C8 |
H10 |
119.9 |
336.8 |
C7 |
C8 |
H2 |
N1 |
244.3 |
242.2 |
H2 |
C8 |
C7 |
H1 |
358.4 |
215.5 |
H2 |
C8 |
C7 |
H9 |
238.2 |
338.6 |
C7 |
C8 |
H2 |
H10 |
122.2 |
121.2 |
N1 |
C8 |
H2 |
H10 |
237.9 |
238.9 |
C2 |
N4 |
H4 |
H3 |
180.0 |
179.9 |
C6 |
C5 |
H5 |
H11 |
123.3 |
237.7 |
H6 |
C6 |
C7 |
H1 |
241.7 |
35.2 |
H6 |
C6 |
C7 |
H9 |
1.9 |
272.0 |
H6 |
C6 |
C5 |
H5 |
357.0 |
86.0 |
H6 |
C6 |
C5 |
H11 |
119.2 |
323.8 |
H7 |
N10 |
S9 |
O11 |
293.3 |
36.4 |
H7 |
N10 |
S9 |
O12 |
60.9 |
263.5 |
H8 |
N10 |
S9 |
O11 |
53.3 |
216.5 |
H8 |
N10 |
S9 |
O12 |
180.9 |
83.6 |
C6 |
C7 |
H9 |
H1 |
239.6 |
123.2 |
H9 |
C7 |
C8 |
N1 |
118.9 |
219.3 |
C8 |
C7 |
H9 |
H1 |
120.3 |
236.9 |
H9 |
C7 |
C8 |
H2 |
238.2 |
338.6 |
H9 |
C7 |
C8 |
H10 |
359.7 |
99.9 |
C7 |
C8 |
H10 |
N1 |
115.7 |
117.8 |
H10 |
C8 |
C7 |
H1 |
119.9 |
336.8 |
C7 |
C8 |
H10 |
H2 |
237.9 |
238.9 |
H10 |
C8 |
C7 |
H9 |
359.7 |
99.9 |
N1 |
C8 |
H10 |
H2 |
122.1 |
121.0 |
C2 |
N4 |
H3 |
H4 |
180.0 |
180.1 |
C6 |
C5 |
H11 |
H5 |
236.7 |
122.3 |
H12 |
C6 |
C7 |
H1 |
1.8 |
159.1 |
H12 |
C6 |
C7 |
H9 |
122.1 |
35.9 |
H12 |
C6 |
C5 |
H5 |
236.9 |
322.2 |
H12 |
C6 |
C5 |
H11 |
359.1 |
200.0 |