PDB Chemical Component 0VY

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 0VY

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C6 C7 1.494 1.552
C6 C5 1.510 1.549
C7 C8 1.477 1.543
C5 N1 1.475 1.474
C8 N1 1.448 1.470
N1 C2 1.366 1.375
C2 N4 1.372 1.375
C2 N3 1.306 1.304
N3 S9 1.634 1.656
N10 S9 1.599 1.656
S9 O11 1.464 1.420
S9 O12 1.439 1.420
C7 H1 1.101 1.090
C8 H2 1.100 1.090
N4 H4 1.000 0.970
C5 H5 1.100 1.090
C6 H6 1.100 1.090
N10 H7 1.000 0.970
N10 H8 1.000 0.970
C7 H9 1.100 1.089
C8 H10 1.100 1.090
N4 H3 1.000 0.970
C5 H11 1.100 1.090
C6 H12 1.100 1.091

Bond Angles for 0VY

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C6 C7 H1 109.7 110.7
C6 C7 H9 109.7 110.9
C6 C5 H5 111.2 110.4
C6 C5 H11 111.2 110.4
C7 C8 N1 104.9 107.3
C8 C7 H1 109.7 110.7
C7 C8 H2 110.6 109.9
C8 C7 H9 109.6 110.7
C7 C8 H10 110.6 109.9
N1 C8 H2 110.6 109.8
N1 C8 H10 110.6 109.9
N1 C2 N4 117.3 120.0
N1 C2 N3 116.8 120.0
N3 C2 N4 125.9 120.0
C2 N4 H4 120.0 120.0
C2 N4 H3 120.0 119.9
C2 N3 S9 119.9 120.0
N3 S9 O11 103.4 106.4
N3 S9 O12 108.9 106.4
N10 S9 O11 110.8 106.4
N10 S9 O12 109.4 106.4
O11 S9 O12 114.8 123.2
H1 C7 H9 109.5 110.6
H2 C8 H10 109.5 110.0
H4 N4 H3 120.0 120.0
H5 C5 H11 109.5 110.3
H6 C6 H12 109.5 110.9
H7 N10 H8 109.5 120.0

Torsion Angles for 0VY

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C8 C7 C6 H1 240.1 118.3
C6 C7 C8 H2 118.3 97.2
C8 C7 C6 H9 119.9 241.5
C6 C7 C8 H10 239.8 218.4
H1 C7 C6 H9 239.7 123.2
C5 C6 C7 H1 121.8 277.1
C5 C6 C7 H9 242.0 153.9
H5 C5 C6 H11 237.7 122.2
C6 C7 C8 H1 119.9 241.6
C6 C7 C8 H9 240.1 118.5
N1 C8 C7 H2 240.7 240.7
N1 C8 C7 H10 119.2 119.4
H1 C7 C8 H9 120.2 236.9
H2 C8 C7 H10 238.5 238.8
C5 N1 C8 H2 240.4 239.5
C5 N1 C8 H10 118.9 118.4
N1 C8 C7 H1 239.2 96.2
C7 C8 N1 H2 119.2 119.4
N1 C8 C7 H9 118.9 219.3
C7 C8 N1 H10 240.7 240.5
C8 N1 C2 N4 183.2 360.0
C8 N1 C2 N3 3.0 180.2
H2 C8 N1 H10 121.5 121.2
N3 C2 N1 N4 179.8 180.3
N1 C2 N4 H4 179.7 180.3
N1 C2 N4 H3 359.7 0.2
N1 C2 N3 S9 186.9 179.7
N1 C2 N4 N3 179.7 180.3
N4 C2 N3 S9 6.7 360.0
H4 N4 C2 H3 180.0 180.1
N1 C2 N3 N4 180.3 179.7
N3 C2 N4 H4 0.0 0.0
N3 C2 N4 H3 180.0 179.9
C2 N3 S9 O11 188.8 293.5
C2 N3 S9 O12 66.3 66.5
S9 N3 C2 N4 6.7 360.0
N10 S9 N3 O11 118.0 246.5
N10 S9 N3 O12 240.6 113.5
O11 S9 N3 O12 122.5 227.0
N3 S9 N10 O11 246.7 113.5
N3 S9 N10 O12 119.1 246.4
O11 S9 N10 O12 232.4 132.9
N3 S9 O11 O12 241.5 123.0
N10 S9 O11 O12 124.6 237.1
N3 S9 O12 O11 115.4 237.0
N10 S9 O12 O11 234.6 122.9
C6 C7 H1 H9 120.4 236.7
H1 C7 C8 N1 239.2 96.2
H1 C7 C8 H2 358.4 215.5
C8 C7 H1 H9 239.7 123.1
H1 C7 C8 H10 119.9 336.8
C7 C8 H2 N1 244.3 242.2
H2 C8 C7 H1 358.4 215.5
H2 C8 C7 H9 238.2 338.6
C7 C8 H2 H10 122.2 121.2
N1 C8 H2 H10 237.9 238.9
C2 N4 H4 H3 180.0 179.9
C6 C5 H5 H11 123.3 237.7
H6 C6 C7 H1 241.7 35.2
H6 C6 C7 H9 1.9 272.0
H6 C6 C5 H5 357.0 86.0
H6 C6 C5 H11 119.2 323.8
H7 N10 S9 O11 293.3 36.4
H7 N10 S9 O12 60.9 263.5
H8 N10 S9 O11 53.3 216.5
H8 N10 S9 O12 180.9 83.6
C6 C7 H9 H1 239.6 123.2
H9 C7 C8 N1 118.9 219.3
C8 C7 H9 H1 120.3 236.9
H9 C7 C8 H2 238.2 338.6
H9 C7 C8 H10 359.7 99.9
C7 C8 H10 N1 115.7 117.8
H10 C8 C7 H1 119.9 336.8
C7 C8 H10 H2 237.9 238.9
H10 C8 C7 H9 359.7 99.9
N1 C8 H10 H2 122.1 121.0
C2 N4 H3 H4 180.0 180.1
C6 C5 H11 H5 236.7 122.3
H12 C6 C7 H1 1.8 159.1
H12 C6 C7 H9 122.1 35.9
H12 C6 C5 H5 236.9 322.2
H12 C6 C5 H11 359.1 200.0