PDB Chemical Component 0VR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0VR
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O72 |
C7 |
1.257 |
1.215 |
| C7 |
O71 |
1.259 |
1.348 |
| C7 |
C1 |
1.496 |
1.473 |
| C1 |
C6 |
1.193 |
1.398 |
| C1 |
C2 |
1.226 |
1.404 |
| C6 |
C5 |
1.341 |
1.378 |
| NH |
C2 |
1.457 |
1.389 |
| NH |
C1' |
1.469 |
1.464 |
| C2 |
C3 |
1.362 |
1.389 |
| C1' |
C2' |
1.504 |
1.530 |
| C2' |
O2' |
1.373 |
1.429 |
| C2' |
C3' |
1.517 |
1.530 |
| C5 |
C4 |
1.576 |
1.386 |
| O3' |
C3' |
1.380 |
1.429 |
| C3 |
C4 |
1.599 |
1.380 |
| C3' |
C4' |
1.523 |
1.530 |
| C4' |
O4' |
1.377 |
1.429 |
| C4' |
C5' |
1.527 |
1.530 |
| C5' |
O5' |
1.403 |
1.429 |
| O5' |
P |
1.574 |
1.609 |
| O1P |
P |
1.510 |
1.481 |
| P |
O3P |
1.517 |
1.610 |
| P |
O2P |
1.522 |
1.610 |
| O2P |
H1 |
0.950 |
0.967 |
| O3P |
H2 |
0.950 |
0.967 |
| C5' |
H3 |
1.100 |
1.090 |
| C5' |
H4 |
1.100 |
1.090 |
| C4' |
H5 |
1.100 |
1.090 |
| O4' |
H6 |
0.951 |
0.967 |
| C3' |
H7 |
1.100 |
1.090 |
| O3' |
H8 |
0.950 |
0.967 |
| C2' |
H9 |
1.100 |
1.090 |
| O2' |
H10 |
0.950 |
0.967 |
| C1' |
H11 |
1.100 |
1.090 |
| C1' |
H12 |
1.100 |
1.090 |
| NH |
H13 |
1.000 |
0.970 |
| C3 |
H14 |
1.080 |
1.080 |
| C4 |
H15 |
1.080 |
1.081 |
| C5 |
H16 |
1.080 |
1.080 |
| C6 |
H17 |
1.080 |
1.080 |
| O71 |
H18 |
0.950 |
0.967 |
Bond Angles for 0VR
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C7 |
O71 |
H18 |
109.5 |
117.0 |
| C2 |
C1 |
C6 |
125.7 |
119.5 |
| C1 |
C6 |
C5 |
123.2 |
119.9 |
| C1 |
C6 |
H17 |
118.4 |
120.1 |
| NH |
C2 |
C1 |
116.5 |
120.2 |
| C1 |
C2 |
C3 |
131.6 |
119.7 |
| C6 |
C5 |
H16 |
120.8 |
119.8 |
| NH |
C2 |
C3 |
111.9 |
120.2 |
| C2 |
NH |
H13 |
106.4 |
120.0 |
| NH |
C1' |
H11 |
109.7 |
109.5 |
| NH |
C1' |
H12 |
109.7 |
109.5 |
| C2 |
C3 |
C4 |
109.2 |
120.0 |
| C2 |
C3 |
H14 |
125.4 |
120.0 |
| C1' |
C2' |
H9 |
107.5 |
109.4 |
| O2' |
C2' |
H9 |
109.2 |
109.5 |
| C2' |
O2' |
H10 |
109.5 |
114.0 |
| C2' |
C3' |
H7 |
108.5 |
109.5 |
| C5 |
C4 |
H15 |
124.0 |
119.8 |
| O3' |
C3' |
H7 |
110.4 |
109.5 |
| C4 |
C3 |
H14 |
125.4 |
120.0 |
| C3 |
C4 |
H15 |
124.0 |
119.8 |
| C3' |
C4' |
H5 |
107.3 |
109.5 |
| O4' |
C4' |
H5 |
109.2 |
109.5 |
| C4' |
O4' |
H6 |
109.5 |
114.0 |
| C4' |
C5' |
H3 |
109.2 |
109.5 |
| C4' |
C5' |
H4 |
109.2 |
109.4 |
| O1P |
P |
O3P |
105.3 |
109.5 |
| O1P |
P |
O2P |
111.1 |
109.4 |
| O2P |
P |
O3P |
110.1 |
109.4 |
| P |
O3P |
H2 |
109.5 |
114.0 |
| P |
O2P |
H1 |
109.5 |
114.0 |
| H3 |
C5' |
H4 |
109.5 |
109.5 |
| H11 |
C1' |
H12 |
109.5 |
109.4 |
Torsion Angles for 0VR
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O72 |
C7 |
O71 |
H18 |
360.0 |
359.9 |
| C7 |
C1 |
C6 |
H17 |
0.0 |
0.3 |
| NH |
C2 |
C1 |
C6 |
179.9 |
180.0 |
| C6 |
C1 |
C2 |
C3 |
0.3 |
360.0 |
| C1 |
C6 |
C5 |
H16 |
179.9 |
180.0 |
| C2 |
C1 |
C6 |
C5 |
360.0 |
0.0 |
| C2 |
C1 |
C6 |
H17 |
179.9 |
180.0 |
| NH |
C2 |
C1 |
C3 |
179.6 |
180.0 |
| C1 |
C2 |
NH |
H13 |
301.4 |
354.3 |
| C1 |
C2 |
C3 |
C4 |
359.8 |
0.1 |
| C1 |
C2 |
C3 |
H14 |
179.8 |
179.9 |
| C1 |
C6 |
C5 |
H17 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
H15 |
180.2 |
179.9 |
| C1 |
C2 |
NH |
C3 |
180.3 |
180.0 |
| C2 |
NH |
C1' |
H11 |
251.5 |
60.0 |
| C2 |
NH |
C1' |
H12 |
11.7 |
300.0 |
| NH |
C2 |
C3 |
C4 |
180.1 |
180.0 |
| NH |
C2 |
C3 |
H14 |
0.2 |
359.9 |
| NH |
C1' |
C2' |
H9 |
78.4 |
60.0 |
| H11 |
C1' |
NH |
H12 |
239.8 |
120.0 |
| C3 |
C2 |
C1 |
C6 |
0.3 |
360.0 |
| NH |
C2 |
C3 |
C1 |
180.4 |
180.0 |
| C3 |
C2 |
NH |
H13 |
121.1 |
174.3 |
| C4 |
C3 |
C2 |
H14 |
180.0 |
180.1 |
| C2 |
C3 |
C4 |
H15 |
180.0 |
180.0 |
| O2' |
C2' |
C1' |
H9 |
242.7 |
240.0 |
| C1' |
C2' |
O2' |
H10 |
180.0 |
300.0 |
| C1' |
C2' |
C3' |
H7 |
14.3 |
60.0 |
| C1' |
C2' |
O2' |
H9 |
116.1 |
119.9 |
| O2' |
C2' |
C3' |
H7 |
252.9 |
300.0 |
| O3' |
C3' |
C2' |
H7 |
240.9 |
240.0 |
| C2' |
C3' |
C4' |
H5 |
51.3 |
60.0 |
| C1 |
C6 |
C5 |
C4 |
359.8 |
0.0 |
| C5 |
C4 |
C3 |
H14 |
180.0 |
180.1 |
| C3 |
C4 |
C5 |
H15 |
180.0 |
180.1 |
| C2' |
C3' |
O3' |
H7 |
117.9 |
120.0 |
| O3' |
C3' |
C4' |
H5 |
292.4 |
300.0 |
| C2 |
C3 |
C4 |
H14 |
180.0 |
179.9 |
| C5 |
C4 |
C3 |
H15 |
180.0 |
179.9 |
| O4' |
C4' |
C3' |
H5 |
240.6 |
240.0 |
| C3' |
C4' |
O4' |
H6 |
180.0 |
300.0 |
| C3' |
C4' |
C5' |
H3 |
177.0 |
65.0 |
| C3' |
C4' |
C5' |
H4 |
296.7 |
305.0 |
| C3' |
C4' |
O4' |
H5 |
118.3 |
120.1 |
| O4' |
C4' |
C5' |
H3 |
52.9 |
305.0 |
| O4' |
C4' |
C5' |
H4 |
172.6 |
185.0 |
| H3 |
C5' |
C4' |
H4 |
240.3 |
120.0 |
| O5' |
P |
O3P |
H2 |
122.2 |
59.9 |
| O5' |
P |
O2P |
H1 |
238.0 |
180.0 |
| O2P |
P |
O1P |
O3P |
119.1 |
240.1 |
| O1P |
P |
O3P |
H2 |
0.0 |
180.0 |
| O1P |
P |
O2P |
H1 |
360.0 |
60.0 |
| O1P |
P |
O3P |
O2P |
119.8 |
240.1 |
| O3P |
P |
O2P |
H1 |
116.2 |
300.0 |
| O1P |
P |
O2P |
O3P |
243.8 |
119.9 |
| O2P |
P |
O3P |
H2 |
240.2 |
299.9 |
| H1 |
O2P |
P |
O3P |
116.2 |
300.0 |
| C4' |
C5' |
H3 |
H4 |
119.5 |
240.0 |
| C4' |
C5' |
H4 |
H3 |
240.5 |
120.0 |
| H5 |
C4' |
O4' |
H6 |
61.8 |
180.0 |
| H5 |
C4' |
C5' |
H3 |
294.9 |
185.0 |
| H5 |
C4' |
C5' |
H4 |
54.6 |
65.0 |
| H6 |
O4' |
C4' |
H5 |
61.8 |
180.0 |
| H7 |
C3' |
C4' |
H5 |
173.1 |
180.0 |
| H8 |
O3' |
C3' |
H7 |
62.2 |
180.0 |
| H9 |
C2' |
O2' |
H10 |
63.8 |
180.0 |
| H9 |
C2' |
C3' |
H7 |
132.1 |
180.0 |
| H10 |
O2' |
C2' |
H9 |
63.8 |
180.0 |
| NH |
C1' |
H11 |
H12 |
120.3 |
240.0 |
| H11 |
C1' |
C2' |
H9 |
318.5 |
180.0 |
| NH |
C1' |
H12 |
H11 |
239.7 |
120.0 |
| H12 |
C1' |
C2' |
H9 |
198.2 |
299.9 |
| H13 |
NH |
C2 |
C1 |
301.4 |
354.3 |
| H13 |
NH |
C2 |
C3 |
121.1 |
174.3 |
| H13 |
NH |
C1' |
H11 |
129.8 |
240.0 |
| H13 |
NH |
C1' |
H12 |
250.0 |
120.1 |
| C2 |
C3 |
H14 |
C4 |
180.0 |
180.1 |
| H14 |
C3 |
C4 |
H15 |
360.0 |
0.1 |
| H15 |
C4 |
C3 |
H14 |
360.0 |
0.1 |
| H16 |
C5 |
C4 |
H15 |
0.1 |
360.0 |
| C1 |
C6 |
H17 |
C5 |
180.0 |
180.0 |
| H17 |
C6 |
C5 |
H16 |
359.9 |
359.9 |