PDB Chemical Component 0VD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 0VD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C20	C19	1.404	1.383
C20	C15	1.405	1.382
C19	C18	1.402	1.382
O2	C14	1.437	1.429
O2	C11	1.383	1.359
C14	C15	1.499	1.507
C15	C16	1.406	1.382
C18	C17	1.404	1.382
C10	C11	1.411	1.387
C10	C9	1.404	1.382
C11	C12	1.419	1.387
C1	N1	1.376	1.369
C1	C3	1.359	1.347
C16	C17	1.404	1.383
C9	C8	1.416	1.383
N1	C2	1.313	1.351
C12	C13	1.402	1.381
C3	C4	1.497	1.506
C3	N2	1.368	1.341
C4	C5	1.542	1.531
C2	N2	1.338	1.306
C8	C13	1.406	1.382
C8	C7	1.523	1.507
C7	C6	1.542	1.507
O1	C6	1.254	1.208
C6	C5	1.539	1.507
C5	N3	1.474	1.469
C1	H1	1.080	1.080
N1	H2	1.000	0.969
C2	H3	1.080	1.080
C12	H5	1.080	1.080
C13	H6	1.080	1.079
C4	H7	1.100	1.089
C4	H8	1.100	1.091
C5	H9	1.100	1.090
C10	H10	1.080	1.080
C9	H11	1.080	1.080
C7	H12	1.100	1.090
C7	H13	1.100	1.090
C19	H14	1.080	1.080
C18	H15	1.080	1.081
C17	H16	1.080	1.080
C20	H17	1.080	1.080
C16	H18	1.080	1.080
C14	H19	1.100	1.090
C14	H20	1.100	1.090
N3	H21	1.000	1.009
N3	H22	1.000	1.009

Bond Angles for 0VD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C20	C19	H14	120.3	120.0
C20	C15	C16	118.2	120.0
C15	C20	H17	119.3	120.0
C19	C18	C17	120.3	120.0
C18	C19	H14	120.3	120.0
C19	C18	H15	119.8	120.0
O2	C14	H19	109.8	109.5
O2	C14	H20	109.9	109.5
C15	C16	H18	119.4	120.0
C17	C18	H15	119.9	120.0
C18	C17	H16	120.3	120.0
C9	C10	C11	119.8	119.9
C11	C10	H10	120.1	120.1
C9	C10	H10	120.1	120.0
C10	C9	H11	118.9	120.0
C11	C12	H5	120.0	120.0
N1	C1	C3	107.9	106.8
C1	N1	C2	107.7	107.2
N1	C1	H1	126.0	126.6
C1	N1	H2	126.2	126.4
C1	C3	C4	130.2	126.0
C1	C3	N2	106.4	108.0
C3	C1	H1	126.1	126.6
C16	C17	H16	120.3	120.0
C9	C8	C7	122.4	119.9
N1	C2	N2	109.8	108.7
C2	N1	H2	126.1	126.5
N1	C2	H3	125.1	125.6
C13	C12	H5	120.0	120.0
C12	C13	H6	118.9	120.0
C3	C4	H7	107.8	109.5
C3	C4	H8	107.8	109.5
C4	C5	N3	110.9	109.4
C5	C4	H7	107.8	109.5
C5	C4	H8	107.8	109.4
C4	C5	H9	109.2	109.4
N2	C2	H3	125.1	125.6
C8	C13	H6	118.9	120.0
C8	C7	H12	108.0	109.4
C8	C7	H13	108.0	109.5
C6	C5	N3	108.1	109.5
C6	C5	H9	109.2	109.5
N3	C5	H9	110.1	109.5
C5	N3	H21	109.5	111.0
C5	N3	H22	109.5	111.0
H7	C4	H8	109.5	109.5
H12	C7	H13	109.5	109.4
H19	C14	H20	109.5	109.5
H21	N3	H22	109.5	111.0

Torsion Angles for 0VD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C18	C19	C20	H14	180.0	179.7
C20	C19	C18	H15	179.9	180.3
C15	C20	C19	H14	180.0	180.4
C20	C15	C16	H18	180.0	180.3
C20	C19	C18	H14	180.0	180.3
C17	C18	C19	H15	180.0	179.9
C19	C18	C17	H16	180.0	180.0
H19	C14	O2	H20	239.5	120.0
O2	C11	C10	H10	0.4	359.5
O2	C11	C12	H5	359.7	0.2
C14	C15	C20	H17	0.0	0.0
C14	C15	C16	H18	360.0	359.8
C16	C15	C20	H17	180.0	179.5
C15	C16	C17	H16	180.0	179.5
C17	C18	C19	H14	179.9	179.9
C19	C18	C17	H15	180.0	180.1
C16	C17	C18	H16	180.0	180.0
C9	C10	C11	H10	180.0	180.5
C11	C10	C9	H11	179.9	180.1
C10	C11	C12	H5	180.1	179.7
C11	C10	C9	H10	180.0	179.5
C10	C9	C8	C7	180.0	180.0
C13	C12	C11	H5	180.0	179.8
C11	C12	C13	H6	179.9	180.2
N1	C1	C3	C4	180.1	180.0
N1	C1	C3	N2	359.9	359.9
C3	C1	N1	H1	180.0	180.4
C1	N1	C2	N2	359.9	360.0
C2	N1	C1	H2	180.0	180.0
C1	N1	C2	H3	179.9	179.9
C3	C1	N1	C2	0.1	0.0
N1	C1	C3	H1	180.0	179.6
C3	C1	N1	H2	180.1	180.0
C1	C3	C4	H7	345.4	4.9
C1	C3	C4	H8	103.5	244.9
C16	C17	C18	H15	180.1	179.9
C18	C17	C16	H16	180.0	180.0
C9	C8	C13	H6	180.1	180.1
C9	C8	C7	H12	175.9	149.9
C9	C8	C7	H13	294.2	30.0
C2	N1	C1	C3	0.1	0.0
C2	N1	C1	H1	180.1	179.7
C1	N1	C2	H2	180.0	180.0
N2	C2	N1	H3	180.0	180.1
C11	C12	C13	H5	180.0	180.2
C8	C13	C12	H6	180.0	180.1
C1	C3	C4	N2	179.8	179.9
C4	C3	C1	H1	0.1	0.4
C5	C4	C3	H7	239.1	120.0
C5	C4	C3	H8	121.0	240.1
C3	C4	C5	H9	44.8	55.0
H7	C4	C3	H8	241.9	120.0
C1	C3	N2	C4	180.1	180.1
N2	C3	C1	H1	179.9	180.3
C3	N2	C2	H3	180.0	180.0
C1	C3	C4	C5	224.5	125.0
C3	C4	C5	H7	121.0	239.9
C3	C4	C5	H8	239.0	120.0
C6	C5	C4	N3	240.9	240.0
C6	C5	C4	H9	119.4	120.0
N3	C5	C4	H9	238.5	240.0
C4	C5	N3	H21	180.0	176.1
C4	C5	N3	H22	300.0	300.0
H7	C4	C5	H8	118.1	240.0
C1	C3	N2	C2	0.1	0.1
N2	C2	N1	H2	180.0	180.0
N1	C2	N2	H3	180.0	179.9
C8	C13	C12	H5	179.9	180.1
C12	C13	C8	H6	180.0	179.9
C7	C8	C13	H6	0.2	0.1
H12	C7	C8	H13	241.7	119.9
C7	C6	C5	N3	121.6	165.0
C7	C6	C5	H9	1.9	44.9
O1	C6	C5	H9	182.8	224.9
C4	C5	C6	N3	120.9	120.0
C6	C5	C4	H7	43.2	295.0
C6	C5	C4	H8	285.1	55.0
C4	C5	C6	H9	240.6	240.0
N3	C5	C6	H9	119.7	120.0
C6	C5	N3	H21	299.9	296.1
C6	C5	N3	H22	59.9	60.0
N3	C5	C4	H7	162.3	55.1
N3	C5	C4	H8	44.3	175.0
C4	C5	N3	H9	120.9	120.0
C6	C5	N3	H9	240.9	240.0
H21	N3	C5	H22	240.0	236.1
N1	C1	H1	C3	180.0	180.5
H1	C1	N1	C2	180.1	179.7
H1	C1	N1	H2	0.1	359.6
H1	C1	C3	C4	0.1	0.4
H1	C1	C3	N2	179.9	180.3
H2	N1	C1	C3	180.1	180.0
C1	N1	H2	C2	180.0	180.0
H2	N1	C1	H1	0.1	359.6
H2	N1	C2	N2	180.0	180.0
H2	N1	C2	H3	360.0	360.0
N1	C2	H3	N2	180.0	180.1
H3	C2	N1	H2	360.0	360.0
H5	C12	C13	H6	359.9	360.0
H6	C13	C12	H5	359.9	360.0
C3	C4	H7	H8	117.0	240.0
H7	C4	C5	N3	162.3	55.1
C5	C4	H7	H8	243.0	119.9
H7	C4	C5	H9	283.8	175.0
C3	C4	H8	H7	243.0	120.1
H8	C4	C5	N3	44.3	175.0
C5	C4	H8	H7	117.0	240.0
H8	C4	C5	H9	165.7	295.0
C4	C5	H9	N3	238.0	240.0
H9	C5	C4	H7	283.8	175.0
H9	C5	C4	H8	165.7	295.0
C6	C5	H9	N3	118.5	120.1
H9	C5	N3	H21	59.1	56.1
H9	C5	N3	H22	179.1	180.0
C9	C10	H10	C11	180.0	179.5
H10	C10	C9	H11	359.9	0.6
H11	C9	C10	C11	179.9	180.1
H11	C9	C10	H10	359.9	0.6
H11	C9	C8	C7	360.0	359.7
C8	C7	H12	H13	117.3	240.1
C8	C7	H13	H12	242.7	119.9
H14	C19	C18	C17	179.9	179.9
H14	C19	C18	H15	359.9	360.0
C19	C18	H15	C17	180.0	179.9
H15	C18	C19	H14	359.9	360.0
H15	C18	C17	H16	0.0	359.9
H16	C17	C18	H15	0.0	359.9
H17	C20	C19	H14	0.0	0.3
H17	C20	C15	C16	180.0	179.5
H18	C16	C17	H16	0.0	360.0
O2	C14	H19	H20	120.7	240.0
O2	C14	H20	H19	239.3	120.0
H21	N3	C5	H9	59.1	56.1
C5	N3	H21	H22	120.0	123.9
H22	N3	C5	H9	179.1	180.0
C5	N3	H22	H21	240.0	236.1