PDB Chemical Component 0VB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0VB
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O31 |
C22 |
1.433 |
1.429 |
| O31 |
C12 |
1.427 |
1.359 |
| C03 |
C12 |
1.534 |
1.388 |
| C03 |
C01 |
1.538 |
1.379 |
| C12 |
C04 |
1.527 |
1.389 |
| C01 |
C07 |
1.529 |
1.394 |
| C04 |
C02 |
1.519 |
1.379 |
| C21 |
C17 |
1.529 |
1.507 |
| C07 |
C02 |
1.525 |
1.395 |
| C07 |
C14 |
1.512 |
1.482 |
| O30 |
C17 |
1.432 |
1.213 |
| N24 |
C14 |
1.487 |
1.302 |
| N24 |
S32 |
1.638 |
1.693 |
| CL1 |
C13 |
1.769 |
1.736 |
| C17 |
N27 |
1.479 |
1.347 |
| C14 |
C08 |
1.489 |
1.447 |
| S32 |
C15 |
1.778 |
1.718 |
| N27 |
C11 |
1.473 |
1.399 |
| C13 |
C11 |
1.523 |
1.390 |
| C13 |
C06 |
1.518 |
1.382 |
| C08 |
C15 |
1.505 |
1.376 |
| C08 |
C16 |
1.494 |
1.471 |
| O29 |
C16 |
1.428 |
1.216 |
| C11 |
C10 |
1.532 |
1.388 |
| C15 |
C20 |
1.526 |
1.507 |
| C06 |
C09 |
1.522 |
1.382 |
| C16 |
N25 |
1.473 |
1.347 |
| C10 |
C19 |
1.526 |
1.507 |
| C10 |
C05 |
1.525 |
1.381 |
| C09 |
C05 |
1.528 |
1.383 |
| C09 |
C23 |
1.502 |
1.507 |
| N28 |
C23 |
1.465 |
1.465 |
| N28 |
C18 |
1.472 |
1.375 |
| N25 |
C18 |
1.458 |
1.380 |
| C18 |
N26 |
1.479 |
1.303 |
| C01 |
H1 |
1.080 |
1.080 |
| C02 |
H2 |
1.080 |
1.080 |
| C03 |
H3 |
1.080 |
1.080 |
| C04 |
H4 |
1.080 |
1.079 |
| C05 |
H5 |
1.080 |
1.081 |
| C06 |
H6 |
1.080 |
1.080 |
| C19 |
H7 |
1.100 |
1.089 |
| C19 |
H8 |
1.100 |
1.090 |
| C19 |
H9 |
1.100 |
1.091 |
| C20 |
H10 |
1.100 |
1.090 |
| C20 |
H11 |
1.100 |
1.090 |
| C20 |
H12 |
1.100 |
1.090 |
| C21 |
H13 |
1.100 |
1.090 |
| C21 |
H14 |
1.100 |
1.089 |
| C21 |
H15 |
1.100 |
1.091 |
| C22 |
H16 |
1.100 |
1.090 |
| C22 |
H17 |
1.100 |
1.090 |
| C22 |
H18 |
1.100 |
1.090 |
| C23 |
H19 |
1.100 |
1.090 |
| C23 |
H20 |
1.100 |
1.090 |
| N25 |
H21 |
1.000 |
0.970 |
| N26 |
H22 |
1.000 |
0.969 |
| N27 |
H23 |
1.000 |
0.971 |
| N28 |
H24 |
1.000 |
0.970 |
Bond Angles for 0VB
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O31 |
C22 |
H16 |
109.5 |
109.4 |
| O31 |
C22 |
H17 |
109.5 |
109.5 |
| O31 |
C22 |
H18 |
109.5 |
109.5 |
| C03 |
C12 |
C04 |
117.6 |
120.2 |
| C12 |
C03 |
H3 |
118.8 |
120.0 |
| C03 |
C01 |
C07 |
120.6 |
120.0 |
| C03 |
C01 |
H1 |
119.7 |
120.0 |
| C12 |
C04 |
H4 |
120.7 |
120.0 |
| C01 |
C07 |
C02 |
115.3 |
119.8 |
| C01 |
C07 |
C14 |
120.2 |
120.1 |
| C07 |
C01 |
H1 |
119.7 |
120.0 |
| C04 |
C02 |
H2 |
117.2 |
120.0 |
| C21 |
C17 |
N27 |
130.4 |
120.0 |
| C07 |
C02 |
H2 |
117.2 |
120.0 |
| C07 |
C14 |
C08 |
138.0 |
122.2 |
| C17 |
N27 |
H23 |
118.5 |
120.0 |
| C14 |
C08 |
C15 |
114.9 |
113.1 |
| C14 |
C08 |
C16 |
130.2 |
123.4 |
| C13 |
C06 |
H6 |
119.8 |
119.9 |
| C15 |
C08 |
C16 |
114.8 |
123.5 |
| C08 |
C15 |
C20 |
131.9 |
126.9 |
| C08 |
C16 |
N25 |
123.5 |
120.0 |
| C11 |
C10 |
C19 |
123.3 |
120.0 |
| C15 |
C20 |
H10 |
109.5 |
109.5 |
| C15 |
C20 |
H11 |
109.5 |
109.5 |
| C15 |
C20 |
H12 |
109.5 |
109.5 |
| C06 |
C09 |
C23 |
109.6 |
119.9 |
| C09 |
C06 |
H6 |
119.8 |
120.0 |
| C16 |
N25 |
C18 |
121.7 |
120.0 |
| C16 |
N25 |
H21 |
119.2 |
120.1 |
| C10 |
C19 |
H7 |
109.5 |
109.5 |
| C10 |
C19 |
H8 |
109.5 |
109.5 |
| C10 |
C19 |
H9 |
109.4 |
109.4 |
| C10 |
C05 |
H5 |
117.1 |
120.0 |
| C09 |
C05 |
H5 |
117.1 |
119.9 |
| C09 |
C23 |
H19 |
106.6 |
109.5 |
| C09 |
C23 |
H20 |
106.6 |
109.5 |
| N28 |
C23 |
H19 |
106.6 |
109.5 |
| N28 |
C23 |
H20 |
106.6 |
109.5 |
| N25 |
C18 |
N26 |
126.6 |
120.0 |
| C18 |
N26 |
H22 |
112.0 |
120.0 |
| H7 |
C19 |
H8 |
109.5 |
109.5 |
| H7 |
C19 |
H9 |
109.5 |
109.5 |
| H8 |
C19 |
H9 |
109.5 |
109.4 |
| H10 |
C20 |
H11 |
109.4 |
109.4 |
| H10 |
C20 |
H12 |
109.5 |
109.5 |
| H11 |
C20 |
H12 |
109.4 |
109.4 |
| H13 |
C21 |
H14 |
109.5 |
109.5 |
| H13 |
C21 |
H15 |
109.4 |
109.4 |
| H14 |
C21 |
H15 |
109.5 |
109.5 |
| H16 |
C22 |
H17 |
109.5 |
109.5 |
| H16 |
C22 |
H18 |
109.5 |
109.5 |
| H17 |
C22 |
H18 |
109.5 |
109.5 |
| H19 |
C23 |
H20 |
109.5 |
109.5 |
Torsion Angles for 0VB
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H16 |
C22 |
O31 |
H17 |
240.0 |
240.0 |
| H16 |
C22 |
O31 |
H18 |
120.0 |
120.0 |
| H17 |
C22 |
O31 |
H18 |
240.0 |
240.0 |
| O31 |
C12 |
C03 |
H3 |
0.2 |
0.0 |
| O31 |
C12 |
C04 |
H4 |
360.0 |
0.4 |
| C12 |
C03 |
C01 |
C07 |
1.3 |
0.1 |
| C12 |
C03 |
C01 |
H1 |
181.3 |
179.7 |
| C03 |
C12 |
C04 |
H4 |
180.3 |
180.4 |
| C03 |
C01 |
C07 |
C02 |
357.5 |
359.7 |
| C03 |
C01 |
C07 |
C14 |
181.8 |
179.7 |
| C07 |
C01 |
C03 |
H1 |
180.0 |
180.3 |
| C04 |
C12 |
C03 |
H3 |
179.8 |
180.1 |
| C12 |
C04 |
C02 |
H2 |
178.3 |
180.0 |
| C03 |
C01 |
C07 |
H1 |
180.0 |
179.7 |
| C01 |
C07 |
C02 |
H2 |
182.8 |
180.0 |
| C01 |
C07 |
C14 |
C08 |
132.7 |
145.0 |
| C01 |
C07 |
C02 |
C04 |
2.8 |
0.6 |
| C07 |
C02 |
C04 |
H2 |
180.0 |
179.5 |
| C21 |
C17 |
N27 |
H23 |
359.9 |
3.9 |
| C01 |
C07 |
C02 |
C14 |
184.5 |
180.0 |
| C02 |
C07 |
C01 |
H1 |
177.6 |
180.0 |
| C04 |
C02 |
C07 |
H2 |
180.0 |
180.5 |
| C01 |
C07 |
C14 |
C02 |
175.3 |
180.0 |
| C14 |
C07 |
C01 |
H1 |
1.8 |
0.0 |
| C14 |
C07 |
C02 |
H2 |
358.3 |
0.0 |
| C07 |
C14 |
C08 |
C15 |
179.4 |
180.0 |
| C07 |
C14 |
C08 |
C16 |
359.8 |
359.7 |
| O30 |
C17 |
N27 |
H23 |
179.6 |
183.9 |
| CL1 |
C13 |
C06 |
H6 |
358.0 |
360.0 |
| C15 |
C08 |
C14 |
C16 |
179.6 |
180.2 |
| C14 |
C08 |
C15 |
C20 |
179.5 |
179.8 |
| C14 |
C08 |
C16 |
N25 |
122.1 |
90.3 |
| S32 |
C15 |
C20 |
H10 |
0.0 |
270.1 |
| S32 |
C15 |
C20 |
H11 |
120.0 |
30.1 |
| S32 |
C15 |
C20 |
H12 |
240.0 |
150.0 |
| C11 |
C13 |
C06 |
H6 |
179.1 |
179.7 |
| C13 |
C11 |
C10 |
C19 |
180.6 |
180.0 |
| C13 |
C06 |
C09 |
C23 |
178.2 |
180.0 |
| C09 |
C06 |
C13 |
H6 |
180.0 |
180.0 |
| C14 |
C08 |
C15 |
C16 |
180.3 |
179.8 |
| C15 |
C08 |
C16 |
N25 |
302.5 |
270.0 |
| C08 |
C15 |
C20 |
H10 |
180.3 |
90.0 |
| C08 |
C15 |
C20 |
H11 |
300.3 |
210.0 |
| C08 |
C15 |
C20 |
H12 |
60.3 |
330.0 |
| C14 |
C08 |
C16 |
C15 |
179.6 |
180.2 |
| C16 |
C08 |
C15 |
C20 |
359.2 |
0.0 |
| C08 |
C16 |
N25 |
C18 |
180.6 |
185.7 |
| C08 |
C16 |
N25 |
H21 |
0.6 |
5.6 |
| O29 |
C16 |
N25 |
H21 |
177.4 |
185.7 |
| C11 |
C10 |
C19 |
H7 |
90.2 |
270.0 |
| C11 |
C10 |
C19 |
H8 |
210.3 |
30.0 |
| C11 |
C10 |
C19 |
H9 |
330.2 |
150.0 |
| C11 |
C10 |
C05 |
H5 |
181.2 |
180.0 |
| C20 |
C15 |
C08 |
C16 |
359.2 |
0.0 |
| H10 |
C20 |
C15 |
H11 |
240.0 |
240.0 |
| H10 |
C20 |
C15 |
H12 |
120.0 |
120.1 |
| H11 |
C20 |
C15 |
H12 |
240.0 |
240.0 |
| C13 |
C06 |
C09 |
H6 |
180.0 |
180.0 |
| C06 |
C09 |
C05 |
H5 |
176.8 |
180.0 |
| C06 |
C09 |
C23 |
H19 |
34.1 |
210.0 |
| C06 |
C09 |
C23 |
H20 |
151.0 |
330.0 |
| C16 |
N25 |
C18 |
N26 |
181.6 |
186.4 |
| C19 |
C10 |
C05 |
H5 |
1.6 |
360.0 |
| H7 |
C19 |
C10 |
H8 |
240.0 |
239.9 |
| H7 |
C19 |
C10 |
H9 |
120.0 |
120.0 |
| H8 |
C19 |
C10 |
H9 |
240.0 |
240.1 |
| C09 |
C05 |
C10 |
H5 |
180.0 |
179.8 |
| C10 |
C05 |
C09 |
H5 |
180.0 |
180.2 |
| C23 |
C09 |
C06 |
H6 |
358.2 |
0.0 |
| C23 |
C09 |
C05 |
H5 |
3.2 |
0.1 |
| N28 |
C23 |
C09 |
H19 |
238.4 |
240.0 |
| N28 |
C23 |
C09 |
H20 |
121.6 |
120.0 |
| H19 |
C23 |
C09 |
H20 |
243.1 |
240.0 |
| C09 |
C23 |
N28 |
H19 |
121.6 |
120.0 |
| C09 |
C23 |
N28 |
H20 |
238.4 |
240.0 |
| H19 |
C23 |
N28 |
H20 |
116.9 |
120.0 |
| N28 |
C18 |
N26 |
H22 |
182.3 |
175.0 |
| C16 |
N25 |
C18 |
H21 |
180.0 |
179.9 |
| N25 |
C18 |
N26 |
H22 |
360.0 |
355.0 |
| C03 |
C01 |
H1 |
C07 |
180.0 |
180.3 |
| H1 |
C01 |
C07 |
C02 |
177.6 |
180.0 |
| H1 |
C01 |
C07 |
C14 |
1.8 |
0.0 |
| H3 |
C03 |
C12 |
C04 |
179.8 |
180.1 |
| H3 |
C03 |
C01 |
C07 |
181.3 |
180.0 |
| H3 |
C03 |
C01 |
H1 |
1.3 |
359.7 |
| H4 |
C04 |
C02 |
H2 |
358.3 |
359.9 |
| H6 |
C06 |
C09 |
C23 |
358.2 |
0.0 |
| C10 |
C19 |
H7 |
H8 |
120.0 |
120.1 |
| C10 |
C19 |
H7 |
H9 |
240.0 |
240.0 |
| H8 |
C19 |
H7 |
H9 |
120.0 |
120.0 |
| C10 |
C19 |
H8 |
H7 |
239.9 |
239.9 |
| C10 |
C19 |
H8 |
H9 |
120.0 |
119.9 |
| H7 |
C19 |
H8 |
H9 |
240.0 |
240.0 |
| C10 |
C19 |
H9 |
H7 |
120.0 |
120.0 |
| C10 |
C19 |
H9 |
H8 |
240.0 |
240.0 |
| H7 |
C19 |
H9 |
H8 |
120.0 |
120.0 |
| C15 |
C20 |
H10 |
H11 |
120.0 |
120.0 |
| C15 |
C20 |
H10 |
H12 |
240.0 |
239.9 |
| H11 |
C20 |
H10 |
H12 |
119.9 |
119.9 |
| C15 |
C20 |
H11 |
H10 |
239.9 |
240.0 |
| C15 |
C20 |
H11 |
H12 |
120.0 |
120.0 |
| H10 |
C20 |
H11 |
H12 |
240.0 |
240.0 |
| C15 |
C20 |
H12 |
H10 |
120.1 |
120.1 |
| C15 |
C20 |
H12 |
H11 |
240.0 |
240.0 |
| H10 |
C20 |
H12 |
H11 |
119.9 |
119.9 |
| H13 |
C21 |
C17 |
N27 |
179.8 |
360.0 |
| H14 |
C21 |
H13 |
H15 |
120.0 |
120.0 |
| H14 |
C21 |
C17 |
N27 |
299.8 |
120.0 |
| H13 |
C21 |
H14 |
H15 |
240.0 |
240.0 |
| H15 |
C21 |
C17 |
N27 |
59.8 |
240.0 |
| H13 |
C21 |
H15 |
H14 |
120.0 |
120.0 |
| O31 |
C22 |
H16 |
H17 |
120.0 |
120.0 |
| O31 |
C22 |
H16 |
H18 |
240.0 |
240.0 |
| H17 |
C22 |
H16 |
H18 |
120.0 |
120.0 |
| O31 |
C22 |
H17 |
H16 |
240.0 |
240.0 |
| O31 |
C22 |
H17 |
H18 |
120.0 |
120.0 |
| H16 |
C22 |
H17 |
H18 |
240.0 |
239.9 |
| O31 |
C22 |
H18 |
H16 |
120.0 |
120.0 |
| O31 |
C22 |
H18 |
H17 |
240.0 |
240.0 |
| H16 |
C22 |
H18 |
H17 |
120.0 |
120.1 |
| C09 |
C23 |
H19 |
H20 |
114.9 |
120.0 |
| N28 |
C23 |
H19 |
H20 |
245.0 |
240.0 |
| C09 |
C23 |
H20 |
H19 |
245.1 |
240.0 |
| N28 |
C23 |
H20 |
H19 |
115.0 |
120.0 |
| C16 |
N25 |
H21 |
C18 |
180.0 |
180.1 |
| H21 |
N25 |
C18 |
N26 |
1.6 |
6.4 |
| H24 |
N28 |
C23 |
H19 |
316.6 |
240.0 |
| H24 |
N28 |
C23 |
H20 |
199.7 |
120.0 |