Atom Nomenclature for 0UT

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0UT

Atom Name (V3) Atom Name (V2)
O01 O01
C02 C02
O03 O03
C04 C04
O05 O05
C07 C07
H1 H1
H2 H2
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C06 C06
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7